Wall clock time and date at job start Tue Mar 31 2020 16:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99581 * 2 1 4 4 C 1.38721 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.38104 * 119.99953 * 179.74527 * 4 3 2 6 6 C 1.38719 * 120.00216 * 0.22774 * 5 4 3 7 7 O 1.35987 * 120.00091 * 180.02562 * 6 5 4 8 8 C 1.38679 * 119.99879 * 0.02562 * 6 5 4 9 9 C 1.50699 * 119.99891 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47099 * 32.74914 * 9 8 6 11 11 C 1.52997 * 109.47566 * 272.74230 * 9 8 6 12 12 N 1.46497 * 109.46990 * 152.74328 * 9 8 6 13 13 C 1.34782 * 120.00296 * 207.19230 * 12 9 8 14 14 O 1.21587 * 119.99441 * 0.02562 * 13 12 9 15 15 N 1.34777 * 120.00010 * 179.97438 * 13 12 9 16 16 C 1.46497 * 119.99518 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47180 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47519 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47264 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00387 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99182 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00110 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47169 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46727 * 120.00503 * 23 21 19 26 26 H 1.48504 * 109.47055 * 239.99990 * 23 21 19 27 27 C 1.38153 * 120.00004 * 0.02562 * 8 6 5 28 28 H 1.08995 * 109.47438 * 300.00239 * 1 2 3 29 29 H 1.09005 * 109.47155 * 60.00336 * 1 2 3 30 30 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99929 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.00341 * 180.25421 * 5 4 3 33 33 H 0.96692 * 114.00147 * 90.00583 * 7 6 5 34 34 H 1.08999 * 109.47470 * 300.00457 * 11 9 8 35 35 H 1.09001 * 109.47140 * 60.00082 * 11 9 8 36 36 H 1.08999 * 109.47468 * 180.02562 * 11 9 8 37 37 H 0.97004 * 120.00074 * 27.19188 * 12 9 8 38 38 H 0.96996 * 119.99757 * 0.02562 * 15 13 12 39 39 H 1.08998 * 109.47866 * 300.00408 * 16 15 13 40 40 H 1.09001 * 109.47214 * 60.01047 * 16 15 13 41 41 H 1.08998 * 109.46772 * 300.00732 * 17 16 15 42 42 H 1.09007 * 109.46879 * 60.00166 * 17 16 15 43 43 H 1.08997 * 109.46773 * 299.99959 * 18 17 16 44 44 H 1.08999 * 109.46974 * 59.99748 * 18 17 16 45 45 H 0.97003 * 119.99096 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.99811 * 180.02562 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2907 2.3751 0.0005 5 6 1.9177 3.6056 0.0059 6 6 3.3029 3.6783 0.0059 7 8 3.9202 4.8900 0.0116 8 6 4.0583 2.5153 0.0000 9 6 5.5632 2.5942 0.0007 10 1 5.8807 3.4735 0.5611 11 6 6.0692 2.6973 -1.4395 12 7 6.1151 1.3905 0.6271 13 6 7.3175 1.4375 1.2342 14 8 7.9439 2.4792 1.2623 15 7 7.8249 0.3301 1.8110 16 6 9.1321 0.3811 2.4704 17 6 9.4716 -0.9988 3.0374 18 6 10.8365 -0.9454 3.7267 19 6 11.1711 -2.3047 4.2846 20 1 10.4796 -3.1249 4.1597 21 6 12.3605 -2.5017 4.9535 22 7 13.2028 -1.5031 5.1051 23 14 12.7749 -4.1865 5.6457 24 1 11.6697 -5.1312 5.3437 25 1 14.0310 -4.6807 5.0266 26 1 12.9537 -4.0871 7.1166 27 6 3.4311 1.2843 -0.0064 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2122 2.3185 0.0014 32 1 1.3295 4.5113 0.0104 33 1 4.0991 5.2360 0.8966 34 1 5.7517 1.8180 -2.0000 35 1 5.6586 3.5929 -1.9057 36 1 7.1577 2.7539 -1.4391 37 1 5.6151 0.5595 0.6050 38 1 7.3249 -0.5008 1.7889 39 1 9.8931 0.6734 1.7468 40 1 9.1022 1.1098 3.2805 41 1 8.7108 -1.2914 3.7610 42 1 9.5016 -1.7273 2.2271 43 1 11.5975 -0.6526 3.0033 44 1 10.8061 -0.2170 4.5370 45 1 14.0397 -1.6418 5.5755 46 1 4.0194 0.3786 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170884685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:49 Heat of formation + Delta-G solvation = -96.646473 kcal Electronic energy + Delta-G solvation = -26279.425496 eV Core-core repulsion = 22362.432908 eV Total energy + Delta-G solvation = -3916.992588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.99392 -39.82701 -38.91523 -36.63195 -35.73982 -34.95298 -33.31579 -31.91324 -30.95170 -30.32664 -28.89583 -27.53673 -26.57117 -24.26909 -23.38594 -22.68836 -21.22805 -20.68518 -20.27644 -18.99078 -18.36240 -17.73325 -16.96208 -16.46340 -16.23793 -15.93812 -15.79318 -15.42258 -14.78387 -14.64805 -14.49050 -14.38120 -14.21566 -13.92415 -13.53442 -13.46265 -12.96943 -12.83861 -12.65576 -12.27551 -12.13990 -11.88847 -11.77409 -11.69657 -11.44799 -11.23548 -10.90645 -10.73035 -10.69921 -10.54931 -10.07562 -9.83734 -9.45206 -9.40048 -9.18218 -9.09112 -8.59911 -8.44856 -8.35797 -6.00296 -4.03106 0.76722 0.87230 2.77408 2.81190 3.14241 3.31013 3.38460 3.39452 3.42097 3.88441 4.19148 4.29324 4.36817 4.46952 4.60690 4.66755 4.68009 4.92006 5.00153 5.03997 5.12188 5.17319 5.35559 5.45414 5.56462 5.60998 5.71350 5.82005 5.84468 5.84750 5.99010 6.04771 6.14955 6.21893 6.50587 6.56262 6.65477 6.83466 6.86990 7.05073 7.09519 7.33324 7.66233 7.79060 7.99034 8.16750 8.40044 8.77749 9.03864 9.60941 11.11052 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002061 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.488227 B =13584.863345 C =14794.650595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.315 6.315 3 C 0.125 3.875 4 C -0.195 4.195 5 C -0.100 4.100 6 C 0.079 3.921 7 O -0.492 6.492 8 C -0.072 4.072 9 C 0.208 3.792 10 H 0.103 0.897 11 C -0.155 4.155 12 N -0.749 5.749 13 C 0.702 3.298 14 O -0.592 6.592 15 N -0.741 5.741 16 C 0.135 3.865 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C -0.133 4.133 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.390 0.610 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.393 0.607 38 H 0.394 0.606 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.019 0.981 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.114 8.334 -12.652 32.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C 0.079 3.921 4 C -0.214 4.214 5 C -0.118 4.118 6 C 0.034 3.966 7 O -0.302 6.302 8 C -0.073 4.073 9 C 0.103 3.897 10 H 0.121 0.879 11 C -0.214 4.214 12 N -0.407 5.407 13 C 0.402 3.598 14 O -0.470 6.470 15 N -0.395 5.395 16 C 0.012 3.988 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.559 4.559 20 H 0.074 0.926 21 C -0.146 4.146 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.152 4.152 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.246 0.754 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.229 0.771 38 H 0.227 0.773 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.267 9.097 -13.139 32.472 hybrid contribution -0.475 -1.527 0.912 1.841 sum -28.742 7.570 -12.227 32.139 Atomic orbital electron populations 1.23089 0.78156 1.04213 1.01380 1.86114 1.21547 1.26574 1.88622 1.18938 0.92079 0.84377 0.96663 1.21124 1.00224 0.91762 1.08282 1.21190 0.93668 0.97893 0.99097 1.18028 0.89910 0.84552 1.04140 1.84886 1.79746 1.31977 1.33584 1.20128 0.95723 0.92283 0.99182 1.19410 0.86598 0.88844 0.94848 0.87886 1.22145 1.02340 1.02248 0.94646 1.45354 1.20485 1.13349 1.61517 1.15985 0.80970 0.84512 0.78353 1.90916 1.60732 1.29896 1.65412 1.45388 1.22866 1.11051 1.60233 1.21509 0.81484 0.99676 0.96123 1.21891 1.01260 0.93169 0.99521 1.19033 0.89596 0.97374 0.95424 1.21244 1.03434 0.95892 1.35338 0.92614 1.25039 0.96439 0.96819 0.96268 1.69982 1.10005 1.30864 1.42405 0.86526 0.78292 0.84364 0.78739 1.19780 1.21020 1.21016 1.20013 0.91352 0.97764 1.06048 0.92532 0.92572 0.88029 0.84973 0.84865 0.75426 0.92530 0.91173 0.91261 0.77107 0.77339 0.91935 0.91960 0.92788 0.92766 0.96228 0.96239 0.93004 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.60 10.50 -19.70 -0.21 -2.81 16 3 C 0.12 1.07 6.69 -39.24 -0.26 0.81 16 4 C -0.20 -1.41 9.03 -39.45 -0.36 -1.76 16 5 C -0.10 -0.75 9.98 -39.45 -0.39 -1.14 16 6 C 0.08 0.70 6.68 -39.24 -0.26 0.44 16 7 O -0.49 -4.06 12.59 -19.70 -0.25 -4.31 16 8 C -0.07 -0.68 5.05 -104.49 -0.53 -1.21 16 9 C 0.21 2.27 2.56 -69.09 -0.18 2.10 16 10 H 0.10 1.28 6.98 -51.93 -0.36 0.92 16 11 C -0.16 -1.65 9.49 37.16 0.35 -1.30 16 12 N -0.75 -8.58 4.98 -59.82 -0.30 -8.88 16 13 C 0.70 10.87 8.55 -86.91 -0.74 10.13 16 14 O -0.59 -11.55 15.97 5.29 0.08 -11.47 16 15 N -0.74 -10.95 5.56 -65.22 -0.36 -11.32 16 16 C 0.14 2.44 5.67 -4.04 -0.02 2.42 16 17 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 18 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 19 C -0.52 -14.62 9.11 -34.44 -0.31 -14.93 16 20 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 23 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C -0.13 -1.20 9.16 -39.45 -0.36 -1.56 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.13 0.64 6.29 -52.49 -0.33 0.31 16 32 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 33 H 0.39 1.76 9.06 45.56 0.41 2.18 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.39 3.55 6.32 -40.82 -0.26 3.29 16 38 H 0.39 4.67 8.49 -40.82 -0.35 4.32 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.13 1.06 6.17 -52.49 -0.32 0.74 16 LS Contribution 385.39 15.07 5.81 5.81 Total: -1.00 -35.27 385.39 -8.16 -43.42 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.20 Total: 4.66 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -2.45 Total: -5.47 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.08 Total: -46.41 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.37 Total: -18.58 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.27 -8.16 -43.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170884685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.223 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds