Wall clock time and date at job start Tue Mar 31 2020 16:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35986 * 116.99581 * 2 1 4 4 C 1.38721 * 120.00246 * 0.02562 * 3 2 1 5 5 C 1.38104 * 119.99953 * 179.74527 * 4 3 2 6 6 C 1.38719 * 120.00216 * 0.22774 * 5 4 3 7 7 O 1.35987 * 120.00091 * 180.02562 * 6 5 4 8 8 C 1.38679 * 119.99879 * 0.02562 * 6 5 4 9 9 C 1.50699 * 119.99891 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.47099 * 32.74914 * 9 8 6 11 11 C 1.52997 * 109.47566 * 272.74230 * 9 8 6 12 12 N 1.46497 * 109.46990 * 152.74328 * 9 8 6 13 13 C 1.34782 * 120.00296 * 207.19230 * 12 9 8 14 14 O 1.21587 * 119.99441 * 0.02562 * 13 12 9 15 15 N 1.34777 * 120.00010 * 179.97438 * 13 12 9 16 16 C 1.46497 * 119.99518 * 179.97438 * 15 13 12 17 17 C 1.53004 * 109.47180 * 180.02562 * 16 15 13 18 18 C 1.52999 * 109.47519 * 180.02562 * 17 16 15 19 19 C 1.50694 * 109.47264 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00093 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00387 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99182 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00110 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47169 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46727 * 120.00503 * 23 21 19 26 26 H 1.48504 * 109.47055 * 239.99990 * 23 21 19 27 27 C 1.38153 * 120.00004 * 0.02562 * 8 6 5 28 28 H 1.08995 * 109.47438 * 300.00239 * 1 2 3 29 29 H 1.09005 * 109.47155 * 60.00336 * 1 2 3 30 30 H 1.09003 * 109.46895 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.99929 * 0.02562 * 4 3 2 32 32 H 1.07998 * 120.00341 * 180.25421 * 5 4 3 33 33 H 0.96692 * 114.00147 * 90.00583 * 7 6 5 34 34 H 1.08999 * 109.47470 * 300.00457 * 11 9 8 35 35 H 1.09001 * 109.47140 * 60.00082 * 11 9 8 36 36 H 1.08999 * 109.47468 * 180.02562 * 11 9 8 37 37 H 0.97004 * 120.00074 * 27.19188 * 12 9 8 38 38 H 0.96996 * 119.99757 * 0.02562 * 15 13 12 39 39 H 1.08998 * 109.47866 * 300.00408 * 16 15 13 40 40 H 1.09001 * 109.47214 * 60.01047 * 16 15 13 41 41 H 1.08998 * 109.46772 * 300.00732 * 17 16 15 42 42 H 1.09007 * 109.46879 * 60.00166 * 17 16 15 43 43 H 1.08997 * 109.46773 * 299.99959 * 18 17 16 44 44 H 1.08999 * 109.46974 * 59.99748 * 18 17 16 45 45 H 0.97003 * 119.99096 * 180.02562 * 22 21 19 46 46 H 1.08001 * 119.99811 * 180.02562 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2907 2.3751 0.0005 5 6 1.9177 3.6056 0.0059 6 6 3.3029 3.6783 0.0059 7 8 3.9202 4.8900 0.0116 8 6 4.0583 2.5153 0.0000 9 6 5.5632 2.5942 0.0007 10 1 5.8807 3.4735 0.5611 11 6 6.0692 2.6973 -1.4395 12 7 6.1151 1.3905 0.6271 13 6 7.3175 1.4375 1.2342 14 8 7.9439 2.4792 1.2623 15 7 7.8249 0.3301 1.8110 16 6 9.1321 0.3811 2.4704 17 6 9.4716 -0.9988 3.0374 18 6 10.8365 -0.9454 3.7267 19 6 11.1711 -2.3047 4.2846 20 1 10.4796 -3.1249 4.1597 21 6 12.3605 -2.5017 4.9535 22 7 13.2028 -1.5031 5.1051 23 14 12.7749 -4.1865 5.6457 24 1 11.6697 -5.1312 5.3437 25 1 14.0310 -4.6807 5.0266 26 1 12.9537 -4.0871 7.1166 27 6 3.4311 1.2843 -0.0064 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2122 2.3185 0.0014 32 1 1.3295 4.5113 0.0104 33 1 4.0991 5.2360 0.8966 34 1 5.7517 1.8180 -2.0000 35 1 5.6586 3.5929 -1.9057 36 1 7.1577 2.7539 -1.4391 37 1 5.6151 0.5595 0.6050 38 1 7.3249 -0.5008 1.7889 39 1 9.8931 0.6734 1.7468 40 1 9.1022 1.1098 3.2805 41 1 8.7108 -1.2914 3.7610 42 1 9.5016 -1.7273 2.2271 43 1 11.5975 -0.6526 3.0033 44 1 10.8061 -0.2170 4.5370 45 1 14.0397 -1.6418 5.5755 46 1 4.0194 0.3786 -0.0105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170884685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:49 Heat of formation + Delta-G solvation = -123.003747 kcal Electronic energy + Delta-G solvation = -26280.568433 eV Core-core repulsion = 22362.432908 eV Total energy + Delta-G solvation = -3918.135525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71210 -40.88483 -39.55118 -37.53576 -36.85865 -36.09842 -35.18491 -33.34572 -32.10223 -31.18211 -29.60215 -28.40413 -27.93385 -25.35628 -24.65394 -23.64056 -22.29010 -22.10905 -21.43882 -19.90486 -19.01446 -18.69488 -18.40649 -17.68850 -17.01631 -16.82835 -16.70626 -16.48329 -16.36863 -15.80904 -15.58879 -15.46380 -15.14771 -14.96401 -14.50715 -14.26966 -14.18151 -13.76384 -13.70085 -13.45912 -13.38060 -13.20745 -12.92398 -12.76792 -12.53467 -12.42362 -12.32434 -12.20493 -11.76955 -11.66006 -11.64354 -11.36884 -11.28168 -11.12094 -10.55039 -10.45490 -10.00689 -9.80858 -9.04419 -8.18567 -6.29775 0.14640 0.27589 1.42335 1.42547 1.55743 1.65839 2.12998 2.32440 2.42724 2.54424 3.15223 3.26971 3.32098 3.48597 3.76642 4.09570 4.17928 4.20558 4.22828 4.24834 4.29648 4.42733 4.45107 4.50173 4.58118 4.71061 4.76944 4.83364 4.89066 4.97770 4.99546 5.07951 5.18570 5.20584 5.25351 5.32121 5.47759 5.50262 5.55316 5.60107 5.72830 5.85784 5.97491 6.24005 6.37148 6.83800 6.87700 7.07262 7.39620 7.56112 8.93798 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002061 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.488227 B =13584.863345 C =14794.650595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.334 6.334 3 C 0.115 3.885 4 C -0.189 4.189 5 C -0.101 4.101 6 C 0.070 3.930 7 O -0.504 6.504 8 C -0.082 4.082 9 C 0.211 3.789 10 H 0.085 0.915 11 C -0.149 4.149 12 N -0.729 5.729 13 C 0.701 3.299 14 O -0.635 6.635 15 N -0.730 5.730 16 C 0.150 3.850 17 C -0.100 4.100 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.066 0.934 21 C -0.005 4.005 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.258 1.258 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.143 4.143 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.158 0.842 32 H 0.154 0.846 33 H 0.404 0.596 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.408 0.592 38 H 0.411 0.589 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.068 0.932 43 H -0.008 1.008 44 H -0.007 1.007 45 H 0.263 0.737 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.854 6.829 -12.985 35.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.247 6.247 3 C 0.069 3.931 4 C -0.208 4.208 5 C -0.119 4.119 6 C 0.025 3.975 7 O -0.316 6.316 8 C -0.084 4.084 9 C 0.105 3.895 10 H 0.103 0.897 11 C -0.207 4.207 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.516 6.516 15 N -0.386 5.386 16 C 0.026 3.974 17 C -0.138 4.138 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.085 0.915 21 C -0.203 4.203 22 N -0.575 5.575 23 Si 0.792 3.208 24 H -0.182 1.182 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.162 4.162 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.134 0.866 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.262 0.738 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.246 0.754 38 H 0.247 0.753 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.011 0.989 44 H 0.011 0.989 45 H 0.072 0.928 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -31.078 7.558 -13.488 34.712 hybrid contribution 0.287 -1.007 0.991 1.442 sum -30.791 6.550 -12.497 33.870 Atomic orbital electron populations 1.23369 0.76304 1.05625 1.02439 1.86089 1.23547 1.26520 1.88591 1.19065 0.92102 0.85089 0.96804 1.21424 1.01507 0.91089 1.06740 1.21427 0.93176 0.98917 0.98411 1.18203 0.90605 0.84411 1.04259 1.84840 1.79856 1.31865 1.35023 1.19954 0.94432 0.93038 1.00952 1.19364 0.87908 0.87715 0.94464 0.89708 1.22071 1.00830 1.03058 0.94777 1.45175 1.19034 1.14403 1.60149 1.16103 0.81682 0.83814 0.78364 1.90891 1.62180 1.31534 1.66996 1.45036 1.21840 1.11869 1.59813 1.21080 0.82740 0.98220 0.95405 1.21590 0.98135 0.94368 0.99743 1.18948 0.92269 0.95917 0.94337 1.21705 1.03796 0.96945 1.35216 0.91541 1.26041 0.96405 1.01144 0.96688 1.70126 1.10597 1.33415 1.43407 0.85353 0.78342 0.79225 0.77831 1.18200 1.20613 1.20579 1.20102 0.92048 0.97654 1.06378 0.91495 0.91405 0.86622 0.82476 0.82876 0.73794 0.91424 0.90628 0.93411 0.75375 0.75264 0.93468 0.93433 0.91378 0.91377 0.98920 0.98896 0.92840 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.33 -4.86 10.50 -93.39 -0.98 -5.84 16 3 C 0.11 1.76 6.69 22.49 0.15 1.91 16 4 C -0.19 -2.25 9.03 22.35 0.20 -2.05 16 5 C -0.10 -1.30 9.98 22.35 0.22 -1.07 16 6 C 0.07 1.16 6.68 22.49 0.15 1.31 16 7 O -0.50 -7.97 12.59 -93.40 -1.18 -9.15 16 8 C -0.08 -1.49 5.05 -19.78 -0.10 -1.59 16 9 C 0.21 4.57 2.56 44.24 0.11 4.69 16 10 H 0.08 2.17 6.98 -2.39 -0.02 2.16 16 11 C -0.15 -3.17 9.49 71.98 0.68 -2.48 16 12 N -0.73 -16.29 4.98 -461.42 -2.30 -18.59 16 13 C 0.70 21.65 8.55 179.05 1.53 23.18 16 14 O -0.63 -25.45 15.97 -3.99 -0.06 -25.52 16 15 N -0.73 -21.03 5.56 -478.53 -2.66 -23.69 16 16 C 0.15 5.47 5.67 86.38 0.49 5.96 16 17 C -0.10 -3.91 5.27 30.60 0.16 -3.75 16 18 C 0.02 1.21 4.97 29.85 0.15 1.36 16 19 C -0.54 -30.23 9.11 25.60 0.23 -29.99 16 20 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 21 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 22 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 23 Si 0.97 44.06 29.54 68.60 2.03 46.08 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 C -0.14 -2.39 9.16 22.35 0.20 -2.18 16 28 H 0.07 0.28 7.66 -2.39 -0.02 0.26 16 29 H 0.07 0.27 7.66 -2.38 -0.02 0.25 16 30 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.16 0.99 6.29 -2.91 -0.02 0.97 16 32 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 33 H 0.40 3.49 9.06 -74.06 -0.67 2.82 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.41 6.80 6.32 -92.71 -0.59 6.21 16 38 H 0.41 8.96 8.49 -92.71 -0.79 8.17 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 43 H -0.01 -0.44 8.14 -2.39 -0.02 -0.45 16 44 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 45 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.14 2.02 6.17 -2.91 -0.02 2.00 16 Total: -1.00 -77.04 385.39 -0.13 -77.17 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -1.02 Total: 20.08 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 5.77 Total: -3.34 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -4.67 Total: -99.50 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -2.22 Total: -40.50 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -77.04 -0.13 -77.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170884685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.834 kcal (2) G-P(sol) polarization free energy of solvation -77.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds