Wall clock time and date at job start Tue Mar 31 2020 15:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 O 1.42897 * 109.46758 * 119.99575 * 2 1 3 5 5 C 1.42906 * 113.99648 * 150.00577 * 4 2 1 6 6 C 1.53002 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46873 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.09002 * 109.47359 * 300.00323 * 1 2 3 28 28 H 1.09007 * 109.46680 * 59.99991 * 1 2 3 29 29 H 1.08992 * 109.46646 * 179.97438 * 1 2 3 30 30 H 1.08987 * 109.47216 * 240.00173 * 2 1 3 31 31 H 1.08996 * 109.47290 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46939 * 300.00023 * 3 2 1 33 33 H 1.09002 * 109.47378 * 59.99688 * 3 2 1 34 34 H 1.08995 * 109.47370 * 59.99792 * 5 4 2 35 35 H 1.08996 * 109.46636 * 299.99592 * 5 4 2 36 36 H 1.08995 * 109.47518 * 59.99549 * 6 5 4 37 37 H 1.09002 * 109.47042 * 299.99534 * 6 5 4 38 38 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 39 39 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 40 40 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 43 43 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 44 44 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 45 45 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 46 46 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2661 -1.3243 0.9887 6 6 3.6755 -2.0090 2.2944 7 6 5.0036 -2.6958 2.1063 8 8 5.5670 -2.6433 1.0336 9 7 5.5654 -3.3683 3.1303 10 6 6.7953 -4.0049 2.9561 11 7 7.4073 -3.9402 1.7852 12 6 8.5677 -4.5323 1.5759 13 6 9.1944 -5.2423 2.5810 14 6 8.5921 -5.3316 3.8280 15 6 7.3722 -4.6980 4.0200 16 8 6.7450 -4.7589 5.2249 17 6 7.3989 -5.4957 6.2602 18 6 6.5495 -5.4516 7.5320 19 6 7.2388 -6.2291 8.6235 20 1 8.1876 -6.7072 8.4294 21 6 6.6577 -6.3311 9.8697 22 7 7.2590 -7.0100 10.8221 23 14 5.0163 -5.5048 10.2053 24 1 3.9137 -6.4474 9.8878 25 1 4.9402 -5.1182 11.6369 26 1 4.8902 -4.2920 9.3576 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.0200 -0.5872 0.7126 35 1 3.1810 -2.0705 0.1988 36 1 2.9215 -2.7461 2.5701 37 1 3.7604 -1.2630 3.0846 38 1 5.1150 -3.4100 3.9884 39 1 9.0344 -4.4605 0.6046 40 1 10.1439 -5.7233 2.3984 41 1 9.0621 -5.8805 4.6307 42 1 8.3749 -5.0534 6.4600 43 1 7.5269 -6.5309 5.9441 44 1 6.4218 -4.4163 7.8479 45 1 5.5733 -5.8937 7.3324 46 1 6.8504 -7.0813 11.6990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171058307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:04 Heat of formation + Delta-G solvation = -88.196125 kcal Electronic energy + Delta-G solvation = -26244.546824 eV Core-core repulsion = 22327.920670 eV Total energy + Delta-G solvation = -3916.626154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 23.98 seconds Orbital eigenvalues (eV) -40.98630 -39.53331 -38.53058 -37.87110 -34.94699 -33.63737 -33.46167 -31.84074 -31.30130 -30.70577 -29.15969 -27.58396 -25.69390 -24.75801 -23.07795 -22.65799 -21.66235 -20.80234 -20.21916 -18.42200 -17.74528 -17.60673 -16.73959 -16.56150 -16.36901 -15.83118 -15.62663 -15.36354 -15.04485 -14.84265 -14.29310 -14.10384 -14.05091 -13.89710 -13.56882 -13.13167 -13.01597 -12.76886 -12.59185 -12.57625 -12.26078 -12.11369 -12.09937 -11.73168 -11.46339 -11.26766 -11.00351 -10.99205 -10.80051 -10.44606 -10.27576 -10.17379 -9.94741 -9.84378 -9.46111 -9.30420 -9.13250 -8.70761 -7.76699 -6.21480 -4.23410 1.12035 1.36586 2.59278 2.62502 3.21802 3.29758 3.32778 3.39752 3.46557 3.92803 4.30971 4.36376 4.49212 4.62977 4.67719 4.79280 4.81664 4.88110 4.89682 5.04754 5.12284 5.17175 5.22840 5.24834 5.37037 5.39544 5.44497 5.49346 5.55388 5.59863 5.73651 5.76554 5.82557 5.87468 5.98026 6.11069 6.24573 6.33525 6.50511 6.91271 6.94038 7.10075 7.15238 7.47552 7.60416 7.94638 8.24934 8.29308 8.78536 9.38054 10.90854 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.002659 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.597630 B =10526.106775 C =13022.847013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.079 3.921 6 C -0.139 4.139 7 C 0.509 3.491 8 O -0.483 6.483 9 N -0.651 5.651 10 C 0.327 3.673 11 N -0.444 5.444 12 C 0.076 3.924 13 C -0.158 4.158 14 C -0.146 4.146 15 C 0.067 3.933 16 O -0.319 6.319 17 C 0.073 3.927 18 C -0.008 4.008 19 C -0.530 4.530 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.425 0.575 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.147 0.853 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.028 0.972 45 H 0.024 0.976 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.094 11.511 -21.245 25.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.305 6.305 5 C 0.002 3.998 6 C -0.179 4.179 7 C 0.295 3.705 8 O -0.353 6.353 9 N -0.300 5.300 10 C 0.095 3.905 11 N -0.159 5.159 12 C -0.080 4.080 13 C -0.180 4.180 14 C -0.173 4.173 15 C 0.016 3.984 16 O -0.232 6.232 17 C -0.001 4.001 18 C -0.045 4.045 19 C -0.567 4.567 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.188 1.188 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.262 0.738 39 H 0.175 0.825 40 H 0.154 0.846 41 H 0.164 0.836 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.047 0.953 45 H 0.042 0.958 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.458 12.084 -22.268 26.411 hybrid contribution -0.148 -0.368 1.398 1.453 sum -7.606 11.716 -20.870 25.113 Atomic orbital electron populations 1.21870 0.93570 1.02762 1.02514 1.22070 0.94928 0.92443 0.88114 1.22311 1.01748 0.96757 1.02563 1.87856 1.36614 1.70140 1.35928 1.22128 0.85518 0.96000 0.96144 1.21479 0.94697 1.01532 1.00238 1.20570 0.86926 0.78955 0.84022 1.90800 1.62600 1.57214 1.24704 1.43451 1.18955 1.51250 1.16307 1.17803 0.88292 0.95658 0.88772 1.67617 1.09886 1.19572 1.18867 1.22430 0.90905 0.95230 0.99482 1.21919 1.01543 1.01238 0.93254 1.21646 0.94798 1.01493 0.99320 1.19550 0.93459 0.98452 0.86977 1.86049 1.48277 1.71119 1.17790 1.23153 0.97117 0.93990 0.85803 1.19586 0.95957 0.98410 0.90547 1.20804 1.08150 1.33346 0.94436 0.90734 1.24941 0.97639 0.94601 0.95827 1.69886 1.39166 1.40729 1.03539 0.86749 0.84125 0.80652 0.77670 1.20035 1.21145 1.18763 0.91736 0.91285 0.91950 0.92092 0.92349 0.91674 0.91731 0.92371 0.92344 0.87645 0.87655 0.73755 0.82542 0.84643 0.83551 0.92292 0.92312 0.95349 0.95784 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.56 37.16 0.36 -0.64 16 2 C 0.08 0.66 3.34 -26.72 -0.09 0.57 16 3 C -0.18 -1.25 9.53 37.16 0.35 -0.90 16 4 O -0.39 -3.92 9.99 -35.23 -0.35 -4.27 16 5 C 0.08 0.80 5.04 37.16 0.19 0.98 16 6 C -0.14 -1.34 6.07 -27.88 -0.17 -1.51 16 7 C 0.51 6.69 7.79 -10.99 -0.09 6.61 16 8 O -0.48 -7.91 14.24 5.56 0.08 -7.83 16 9 N -0.65 -8.82 5.39 -11.29 -0.06 -8.88 16 10 C 0.33 5.15 7.45 -154.43 -1.15 4.00 16 11 N -0.44 -7.12 7.88 -12.22 -0.10 -7.22 16 12 C 0.08 0.99 11.17 -17.55 -0.20 0.80 16 13 C -0.16 -1.89 10.10 -39.44 -0.40 -2.29 16 14 C -0.15 -2.03 9.14 -39.17 -0.36 -2.39 16 15 C 0.07 1.05 6.72 -38.91 -0.26 0.79 16 16 O -0.32 -5.46 9.39 -19.66 -0.18 -5.65 16 17 C 0.07 1.36 4.70 37.16 0.17 1.54 16 18 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 19 C -0.53 -14.21 9.66 -34.44 -0.33 -14.55 16 20 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.90 -26.42 13.96 55.43 0.77 -25.64 16 23 Si 0.88 20.67 27.47 -169.99 -4.67 16.00 16 24 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.26 -5.90 6.54 56.52 0.37 -5.54 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 7.79 -51.94 -0.40 0.05 16 31 H 0.06 0.44 7.87 -51.93 -0.41 0.03 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.61 7.83 -51.93 -0.41 0.20 16 35 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 36 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.42 4.94 8.04 -40.82 -0.33 4.61 16 39 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.15 1.91 6.44 -52.49 -0.34 1.57 16 42 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 43 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 44 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 45 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -32.79 384.79 -8.16 -40.95 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -7.26 Total: 2.10 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.19 Total: -5.36 kcal Atomic # 7 Polarization: -42.36 SS G_CDS: 0.62 Total: -41.74 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -0.46 Total: -17.74 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.79 -8.16 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171058307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.246 kcal (2) G-P(sol) polarization free energy of solvation -32.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.99 seconds