Wall clock time and date at job start Tue Mar 31 2020 15:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46901 * 2 1 4 4 O 1.42897 * 109.46758 * 119.99575 * 2 1 3 5 5 C 1.42906 * 113.99648 * 150.00577 * 4 2 1 6 6 C 1.53002 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.46873 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99823 * 179.97438 * 7 6 5 10 10 C 1.39581 * 119.99990 * 179.97438 * 9 7 6 11 11 N 1.32276 * 119.72745 * 0.26696 * 10 9 7 12 12 C 1.31949 * 121.69079 * 180.30946 * 11 10 9 13 13 C 1.38093 * 120.95747 * 359.70619 * 12 11 10 14 14 C 1.38775 * 119.35013 * 359.97438 * 13 12 11 15 15 C 1.38801 * 118.45054 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50125 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 H 1.09002 * 109.47359 * 300.00323 * 1 2 3 28 28 H 1.09007 * 109.46680 * 59.99991 * 1 2 3 29 29 H 1.08992 * 109.46646 * 179.97438 * 1 2 3 30 30 H 1.08987 * 109.47216 * 240.00173 * 2 1 3 31 31 H 1.08996 * 109.47290 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.46939 * 300.00023 * 3 2 1 33 33 H 1.09002 * 109.47378 * 59.99688 * 3 2 1 34 34 H 1.08995 * 109.47370 * 59.99792 * 5 4 2 35 35 H 1.08996 * 109.46636 * 299.99592 * 5 4 2 36 36 H 1.08995 * 109.47518 * 59.99549 * 6 5 4 37 37 H 1.09002 * 109.47042 * 299.99534 * 6 5 4 38 38 H 0.97000 * 120.00150 * 359.97438 * 9 7 6 39 39 H 1.08000 * 119.52722 * 179.72569 * 12 11 10 40 40 H 1.07997 * 120.32692 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.77560 * 180.02562 * 14 13 12 42 42 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 43 43 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 44 44 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 45 45 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 46 46 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 3.2661 -1.3243 0.9887 6 6 3.6755 -2.0090 2.2944 7 6 5.0036 -2.6958 2.1063 8 8 5.5670 -2.6433 1.0336 9 7 5.5654 -3.3683 3.1303 10 6 6.7953 -4.0049 2.9561 11 7 7.4073 -3.9402 1.7852 12 6 8.5677 -4.5323 1.5759 13 6 9.1944 -5.2423 2.5810 14 6 8.5921 -5.3316 3.8280 15 6 7.3722 -4.6980 4.0200 16 8 6.7450 -4.7589 5.2249 17 6 7.3989 -5.4957 6.2602 18 6 6.5495 -5.4516 7.5320 19 6 7.2388 -6.2291 8.6235 20 1 8.1876 -6.7072 8.4294 21 6 6.6577 -6.3311 9.8697 22 7 7.2590 -7.0100 10.8221 23 14 5.0163 -5.5048 10.2053 24 1 3.9137 -6.4474 9.8878 25 1 4.9402 -5.1182 11.6369 26 1 4.8902 -4.2920 9.3576 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5137 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 4.0200 -0.5872 0.7126 35 1 3.1810 -2.0705 0.1988 36 1 2.9215 -2.7461 2.5701 37 1 3.7604 -1.2630 3.0846 38 1 5.1150 -3.4100 3.9884 39 1 9.0344 -4.4605 0.6046 40 1 10.1439 -5.7233 2.3984 41 1 9.0621 -5.8805 4.6307 42 1 8.3749 -5.0534 6.4600 43 1 7.5269 -6.5309 5.9441 44 1 6.4218 -4.4163 7.8479 45 1 5.5733 -5.8937 7.3324 46 1 6.8504 -7.0813 11.6990 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171058307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:46 Heat of formation + Delta-G solvation = -108.811041 kcal Electronic energy + Delta-G solvation = -26245.440754 eV Core-core repulsion = 22327.920670 eV Total energy + Delta-G solvation = -3917.520083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 7.06 seconds Orbital eigenvalues (eV) -42.08139 -40.58905 -39.34875 -39.03959 -36.02973 -35.39507 -34.33094 -33.08522 -32.65397 -31.82828 -30.28217 -28.11778 -27.31819 -25.77865 -24.34443 -23.68640 -22.42331 -22.27281 -21.27077 -19.68260 -19.09949 -18.56291 -18.23039 -17.61716 -17.34075 -17.03694 -16.70604 -16.29285 -16.13912 -16.01362 -15.69006 -15.27661 -15.04054 -14.93404 -14.72030 -14.45405 -14.10397 -13.86535 -13.68103 -13.38340 -13.34443 -13.09545 -12.85389 -12.77526 -12.70581 -12.40683 -12.19381 -12.12961 -11.89541 -11.82399 -11.64641 -11.61225 -11.47905 -11.39470 -10.80027 -10.56556 -10.43263 -10.22080 -8.88879 -8.33046 -6.39916 0.06175 0.26289 1.38609 1.40365 1.51824 1.59351 1.68714 2.08493 2.34746 2.70156 2.85375 3.02608 3.43022 3.65051 3.82750 3.84285 3.97980 4.01841 4.09815 4.14869 4.22209 4.24181 4.29281 4.30670 4.43384 4.47358 4.67161 4.68501 4.75926 4.78779 4.91082 4.92644 4.94137 4.97410 5.06586 5.13270 5.24677 5.28544 5.33141 5.33496 5.48453 5.58258 6.16061 6.17151 6.24382 6.27002 6.66761 6.89132 7.23094 7.25379 8.82405 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010474 B = 0.002659 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.597630 B =10526.106775 C =13022.847013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.397 6.397 5 C 0.083 3.917 6 C -0.129 4.129 7 C 0.510 3.490 8 O -0.519 6.519 9 N -0.650 5.650 10 C 0.312 3.688 11 N -0.474 5.474 12 C 0.075 3.925 13 C -0.146 4.146 14 C -0.150 4.150 15 C 0.044 3.956 16 O -0.323 6.323 17 C 0.086 3.914 18 C -0.006 4.006 19 C -0.536 4.536 20 H 0.042 0.958 21 C 0.011 3.989 22 N -0.944 5.944 23 Si 0.948 3.052 24 H -0.266 1.266 25 H -0.285 1.285 26 H -0.244 1.244 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.431 0.569 39 H 0.186 0.814 40 H 0.173 0.827 41 H 0.153 0.847 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.031 0.969 45 H 0.030 0.970 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.093 12.486 -22.532 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.317 6.317 5 C 0.006 3.994 6 C -0.169 4.169 7 C 0.297 3.703 8 O -0.392 6.392 9 N -0.298 5.298 10 C 0.080 3.920 11 N -0.189 5.189 12 C -0.082 4.082 13 C -0.167 4.167 14 C -0.177 4.177 15 C -0.007 4.007 16 O -0.237 6.237 17 C 0.012 3.988 18 C -0.043 4.043 19 C -0.573 4.573 20 H 0.060 0.940 21 C -0.187 4.187 22 N -0.583 5.583 23 Si 0.771 3.229 24 H -0.191 1.191 25 H -0.210 1.210 26 H -0.167 1.167 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.271 0.729 39 H 0.203 0.797 40 H 0.190 0.810 41 H 0.171 0.829 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.048 0.952 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.470 13.070 -23.566 28.248 hybrid contribution 0.296 -0.706 1.670 1.837 sum -8.174 12.365 -21.896 26.441 Atomic orbital electron populations 1.21875 0.92426 1.02817 1.03303 1.22311 0.95881 0.92763 0.87586 1.22294 1.01212 0.96330 1.03280 1.87834 1.36400 1.70364 1.37110 1.22026 0.85512 0.95649 0.96179 1.21450 0.92947 1.01997 1.00506 1.21134 0.87583 0.78262 0.83273 1.90773 1.63813 1.58583 1.26047 1.43534 1.18534 1.50968 1.16804 1.18000 0.89073 0.96117 0.88787 1.67679 1.11301 1.20766 1.19164 1.23039 0.90056 0.94105 1.00980 1.22275 1.02426 1.00097 0.91866 1.21904 0.94284 1.01008 1.00468 1.19674 0.94549 1.00089 0.86383 1.85971 1.48347 1.71212 1.18126 1.22761 0.96353 0.94565 0.85150 1.19438 0.96263 0.97574 0.91033 1.21120 1.07211 1.33088 0.95925 0.93959 1.25901 1.01763 0.95361 0.95668 1.70031 1.41320 1.42777 1.04215 0.85683 0.79185 0.80298 0.77695 1.19088 1.21047 1.16741 0.92036 0.89408 0.92258 0.91809 0.93163 0.89950 0.92022 0.93161 0.93015 0.85888 0.85984 0.72930 0.79706 0.80958 0.82899 0.92020 0.91996 0.95072 0.95184 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.56 71.99 0.69 -1.04 16 2 C 0.07 1.08 3.34 30.60 0.10 1.18 16 3 C -0.17 -2.28 9.53 71.98 0.69 -1.59 16 4 O -0.40 -7.68 9.99 -148.98 -1.49 -9.17 16 5 C 0.08 1.63 5.04 71.98 0.36 2.00 16 6 C -0.13 -2.32 6.07 29.85 0.18 -2.14 16 7 C 0.51 13.11 7.79 87.66 0.68 13.80 16 8 O -0.52 -17.01 14.24 -3.02 -0.04 -17.05 16 9 N -0.65 -17.16 5.39 -308.03 -1.66 -18.82 16 10 C 0.31 9.60 7.45 132.98 0.99 10.60 16 11 N -0.47 -14.74 7.88 -192.58 -1.52 -16.25 16 12 C 0.07 1.79 11.17 84.64 0.95 2.73 16 13 C -0.15 -3.09 10.10 22.36 0.23 -2.87 16 14 C -0.15 -3.93 9.14 22.53 0.21 -3.73 16 15 C 0.04 1.33 6.72 22.70 0.15 1.49 16 16 O -0.32 -10.72 9.39 -93.25 -0.88 -11.59 16 17 C 0.09 3.14 4.70 71.98 0.34 3.47 16 18 C -0.01 -0.24 4.41 29.85 0.13 -0.11 16 19 C -0.54 -29.01 9.66 25.60 0.25 -28.76 16 20 H 0.04 2.49 7.99 -2.91 -0.02 2.46 16 21 C 0.01 0.62 5.47 84.65 0.46 1.08 16 22 N -0.94 -56.74 13.96 21.45 0.30 -56.44 16 23 Si 0.95 42.03 27.47 68.60 1.88 43.92 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 26 H -0.24 -9.98 6.54 99.48 0.65 -9.32 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.91 7.79 -2.39 -0.02 0.89 16 31 H 0.05 0.73 7.87 -2.39 -0.02 0.71 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 1.05 7.83 -2.39 -0.02 1.03 16 35 H 0.05 1.07 8.04 -2.39 -0.02 1.05 16 36 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.43 9.65 8.04 -92.71 -0.75 8.90 16 39 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 40 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.15 3.74 6.44 -2.91 -0.02 3.73 16 42 H 0.06 2.18 7.70 -2.39 -0.02 2.16 16 43 H 0.06 2.19 7.70 -2.39 -0.02 2.17 16 44 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 45 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 46 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -71.51 384.79 3.18 -68.33 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.18 Total: 20.99 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 6.40 Total: -3.90 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -2.88 Total: -91.52 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -2.41 Total: -37.81 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.92 kcal Total: -71.51 3.18 -68.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171058307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.485 kcal (2) G-P(sol) polarization free energy of solvation -71.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.07 seconds