Wall clock time and date at job start Tue Mar 31 2020 16:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.51481 * 2 1 4 4 C 1.53293 * 109.54892 * 120.12720 * 2 1 3 5 5 N 1.47157 * 108.38325 * 172.25254 * 4 2 1 6 6 C 1.34771 * 120.98608 * 129.48150 * 5 4 2 7 7 O 1.21282 * 119.99971 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00273 * 179.97438 * 6 5 4 9 9 N 1.46897 * 109.46922 * 180.02562 * 8 6 5 10 10 C 1.46898 * 110.99806 * 170.00170 * 9 8 6 11 11 C 1.50704 * 109.47044 * 285.38225 * 10 9 8 12 12 H 1.07993 * 120.00171 * 4.60230 * 11 10 9 13 13 C 1.37882 * 119.99969 * 184.60701 * 11 10 9 14 14 N 1.31515 * 120.00003 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99833 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47201 * 60.00230 * 15 13 11 17 17 H 1.48504 * 109.46783 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47210 * 299.99719 * 15 13 11 19 19 C 1.46899 * 111.00214 * 293.95064 * 9 8 6 20 20 C 1.50701 * 109.47413 * 164.33702 * 19 9 8 21 21 C 1.34510 * 125.79004 * 95.55524 * 20 19 9 22 22 C 1.41381 * 106.84296 * 179.89244 * 21 20 19 23 23 C 1.34516 * 106.83768 * 0.37389 * 22 21 20 24 24 O 1.34299 * 108.42384 * 359.77110 * 23 22 21 25 25 C 1.47155 * 118.03423 * 309.46483 * 5 4 2 26 26 C 1.53297 * 108.38595 * 50.53233 * 25 5 4 27 27 O 1.42966 * 109.22420 * 307.69790 * 26 25 5 28 28 H 1.09003 * 109.47477 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47273 * 300.00157 * 1 2 3 30 30 H 1.09002 * 109.47155 * 60.00269 * 1 2 3 31 31 H 1.09006 * 109.68355 * 291.96955 * 4 2 1 32 32 H 1.08997 * 109.68484 * 52.53191 * 4 2 1 33 33 H 1.09004 * 109.46880 * 300.00484 * 8 6 5 34 34 H 1.08996 * 109.46595 * 60.00451 * 8 6 5 35 35 H 1.09006 * 109.47426 * 45.37834 * 10 9 8 36 36 H 1.08998 * 109.47532 * 165.37679 * 10 9 8 37 37 H 0.96999 * 120.00183 * 179.97438 * 14 13 11 38 38 H 1.08997 * 109.47327 * 284.34369 * 19 9 8 39 39 H 1.09006 * 109.46591 * 44.33452 * 19 9 8 40 40 H 1.07996 * 126.57833 * 0.02957 * 21 20 19 41 41 H 1.07991 * 126.58170 * 180.12286 * 22 21 20 42 42 H 1.07997 * 125.79186 * 179.79240 * 23 22 21 43 43 H 1.09002 * 109.67902 * 290.81428 * 25 5 4 44 44 H 1.08996 * 109.68578 * 170.25396 * 25 5 4 45 45 H 1.08997 * 109.51279 * 187.77686 * 26 25 5 46 46 H 1.09000 * 109.51144 * 67.62286 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0430 -0.7251 1.2494 5 7 3.5022 -0.8750 1.1327 6 6 4.3205 -0.5025 2.1367 7 8 3.8567 -0.0353 3.1554 8 6 5.8117 -0.6665 1.9938 9 7 6.4758 -0.1913 3.2149 10 6 7.9004 -0.5500 3.2129 11 6 8.0481 -2.0223 3.4987 12 1 7.1707 -2.6450 3.5914 13 6 9.3035 -2.5741 3.6419 14 7 10.3720 -1.8158 3.5286 15 14 9.4866 -4.3989 3.9969 16 1 8.8744 -5.1817 2.8935 17 1 10.9279 -4.7400 4.1046 18 1 8.8033 -4.7257 5.2742 19 6 6.2980 1.2573 3.3812 20 6 6.6414 1.6465 4.7960 21 6 7.8314 2.1111 5.2173 22 6 7.7102 2.3487 6.6057 23 6 6.4559 2.0072 6.9514 24 8 5.8131 1.5826 5.8513 25 6 4.0416 -1.4440 -0.1125 26 6 3.4312 -0.6840 -1.2956 27 8 2.0075 -0.6759 -1.1658 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8040 -0.1400 2.1376 32 1 1.5775 -1.7081 1.3205 33 1 6.0482 -1.7191 1.8380 34 1 6.1609 -0.0855 1.1403 35 1 8.3305 -0.3244 2.2371 36 1 8.4204 0.0232 3.9804 37 1 11.2552 -2.2039 3.6297 38 1 6.9540 1.7857 2.6896 39 1 5.2613 1.5223 3.1729 40 1 8.7101 2.2737 4.6108 41 1 8.4785 2.7275 7.2633 42 1 6.0367 2.0651 7.9450 43 1 3.7772 -2.4994 -0.1786 44 1 5.1260 -1.3351 -0.1265 45 1 3.7090 -1.1768 -2.2273 46 1 3.8022 0.3409 -1.3003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176292845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:26 Heat of formation + Delta-G solvation = -66.508259 kcal Electronic energy + Delta-G solvation = -28156.440218 eV Core-core repulsion = 24240.754521 eV Total energy + Delta-G solvation = -3915.685697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.36745 -41.46789 -39.67907 -37.88111 -35.82980 -34.70918 -34.00908 -33.79283 -31.77398 -30.06341 -29.70269 -28.53052 -26.75509 -25.67780 -24.38461 -23.10345 -22.51296 -22.12720 -21.20130 -20.17720 -18.59213 -18.41175 -18.15394 -17.69274 -17.18701 -16.78464 -16.74637 -16.65818 -16.16720 -15.87643 -15.52158 -15.44162 -15.23360 -14.58671 -14.42301 -14.25746 -14.01284 -13.71713 -13.69810 -13.47615 -13.29620 -13.19145 -12.96628 -12.89674 -12.78973 -12.65251 -12.54274 -12.37216 -12.17215 -11.95537 -11.67750 -11.40793 -11.13525 -10.77582 -10.71958 -10.54124 -9.60784 -9.33510 -9.08021 -8.17933 -6.26957 0.87858 1.40716 1.43873 1.51283 1.56017 1.73316 1.81099 2.24956 2.41214 2.74345 3.13679 3.27488 3.51849 3.67327 3.90413 3.97518 4.01218 4.08976 4.15598 4.17426 4.20826 4.31916 4.36331 4.40199 4.45316 4.50729 4.52046 4.69490 4.74559 4.86122 4.90342 4.99012 5.00069 5.03495 5.13091 5.19888 5.24991 5.30574 5.40721 5.62921 5.69914 6.03544 6.10877 6.14569 6.31544 6.38312 6.49735 6.85305 7.14052 7.41449 8.91955 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009896 B = 0.004294 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.835373 B = 6518.492433 C = 8620.228526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.078 3.922 3 H 0.058 0.942 4 C 0.083 3.917 5 N -0.619 5.619 6 C 0.518 3.482 7 O -0.556 6.556 8 C 0.051 3.949 9 N -0.533 5.533 10 C 0.207 3.793 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.011 3.989 14 N -0.927 5.927 15 Si 0.960 3.040 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.279 1.279 19 C 0.133 3.867 20 C -0.003 4.003 21 C -0.222 4.222 22 C -0.224 4.224 23 C -0.050 4.050 24 O -0.188 6.188 25 C 0.065 3.935 26 C 0.050 3.950 27 O -0.388 6.388 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.077 0.923 35 H -0.021 1.021 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.140 0.860 41 H 0.169 0.831 42 H 0.239 0.761 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.134 0.866 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 5.456 -8.083 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 H 0.076 0.924 4 C -0.040 4.040 5 N -0.355 5.355 6 C 0.307 3.693 7 O -0.434 6.434 8 C -0.079 4.079 9 N -0.258 5.258 10 C 0.081 3.919 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.187 4.187 14 N -0.568 5.568 15 Si 0.785 3.215 16 H -0.187 1.187 17 H -0.207 1.207 18 H -0.204 1.204 19 C 0.006 3.994 20 C -0.054 4.054 21 C -0.242 4.242 22 C -0.243 4.243 23 C -0.117 4.117 24 O -0.083 6.083 25 C -0.057 4.057 26 C -0.027 4.027 27 O -0.307 6.307 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.094 0.906 35 H -0.004 1.004 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.158 0.842 41 H 0.187 0.813 42 H 0.255 0.745 43 H 0.105 0.895 44 H 0.123 0.877 45 H 0.152 0.848 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.370 5.276 -7.298 17.814 hybrid contribution 1.466 -0.387 0.028 1.516 sum -13.905 4.888 -7.270 16.435 Atomic orbital electron populations 1.21728 0.90505 1.03691 1.03696 1.22503 0.96837 0.94694 0.83997 0.92375 1.22381 0.79523 1.02123 0.99960 1.48259 1.06911 1.63420 1.16875 1.20900 0.89363 0.76600 0.82411 1.90657 1.77623 1.45506 1.29606 1.21892 0.89888 1.03636 0.92513 1.61612 1.15868 1.11807 1.36537 1.19529 0.81774 0.96025 0.94544 1.21330 0.92112 0.94180 1.48422 0.92758 1.25736 0.95394 1.02532 0.95081 1.70047 0.98341 1.37381 1.50988 0.85582 0.76988 0.79993 0.78929 1.18705 1.20711 1.20449 1.20492 1.02177 0.89197 0.87577 1.22372 0.89938 1.03257 0.89834 1.21758 0.97800 1.07671 0.96935 1.22071 0.98685 1.08153 0.95389 1.24778 0.93244 1.02325 0.91392 1.84039 1.41395 1.66234 1.16680 1.22718 1.00832 0.99145 0.83027 1.23110 0.80365 1.00509 0.98674 1.87948 1.21816 1.77563 1.43379 0.91282 0.89717 0.90716 0.89589 0.90320 0.87448 0.90563 1.00350 0.96082 0.92692 0.91834 0.89089 0.84193 0.81340 0.74494 0.89460 0.87674 0.84838 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.57 71.98 0.69 -1.24 16 2 C 0.08 1.48 3.40 30.69 0.10 1.58 16 3 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.08 1.92 5.93 86.35 0.51 2.43 16 5 N -0.62 -16.40 3.02 -817.33 -2.47 -18.87 16 6 C 0.52 17.98 7.28 87.66 0.64 18.62 16 7 O -0.56 -23.42 13.94 -3.04 -0.04 -23.46 16 8 C 0.05 1.87 3.65 85.56 0.31 2.18 16 9 N -0.53 -23.96 4.12 -909.93 -3.75 -27.70 16 10 C 0.21 10.76 4.58 85.56 0.39 11.16 16 11 C -0.52 -29.30 8.58 25.60 0.22 -29.08 16 12 H 0.05 3.05 7.59 -2.91 -0.02 3.03 16 13 C 0.01 0.63 5.46 84.66 0.46 1.10 16 14 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 15 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 17 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 C 0.13 5.39 5.06 85.56 0.43 5.82 16 20 C 0.00 -0.14 6.30 24.83 0.16 0.02 16 21 C -0.22 -8.87 9.51 22.19 0.21 -8.66 16 22 C -0.22 -7.63 10.91 22.19 0.24 -7.39 16 23 C -0.05 -1.65 12.09 66.97 0.81 -0.84 16 24 O -0.19 -7.80 10.65 -2.50 -0.03 -7.83 16 25 C 0.07 1.27 6.54 86.35 0.56 1.84 16 26 C 0.05 0.81 6.98 72.08 0.50 1.31 16 27 O -0.39 -7.61 10.38 -148.98 -1.55 -9.16 16 28 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 2.26 7.08 -2.38 -0.02 2.25 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.11 4.05 7.11 -2.39 -0.02 4.03 16 34 H 0.08 2.36 7.64 -2.39 -0.02 2.35 16 35 H -0.02 -1.13 8.02 -2.38 -0.02 -1.15 16 36 H 0.02 1.20 6.13 -2.39 -0.01 1.19 16 37 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 38 H 0.06 2.35 8.06 -2.39 -0.02 2.34 16 39 H 0.09 3.62 5.80 -2.38 -0.01 3.61 16 40 H 0.14 5.52 8.06 -2.91 -0.02 5.50 16 41 H 0.17 4.61 8.06 -2.92 -0.02 4.58 16 42 H 0.24 5.21 8.06 -2.91 -0.02 5.18 16 43 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.11 1.95 6.05 -2.39 -0.01 1.94 16 45 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.35 373.20 1.70 -72.65 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.97 Total: 23.70 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.25 Total: -1.15 kcal Atomic # 7 Polarization: -94.84 SS G_CDS: -5.93 Total: -100.77 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -1.62 Total: -40.45 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -74.35 1.70 -72.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176292845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.140 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds