Wall clock time and date at job start Tue Mar 31 2020 15:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35976 * 117.00495 * 2 1 4 4 C 1.38721 * 119.96825 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.11635 * 179.72631 * 4 3 2 6 6 C 1.38519 * 120.06805 * 0.50621 * 5 4 3 7 7 O 1.36053 * 120.02453 * 179.77067 * 6 5 4 8 8 C 1.42901 * 117.00517 * 4.77959 * 7 6 5 9 9 C 1.53000 * 109.47302 * 204.63963 * 8 7 6 10 10 C 1.53002 * 109.46609 * 84.64056 * 8 7 6 11 11 C 1.39267 * 119.94444 * 359.49191 * 6 5 4 12 12 N 1.40158 * 120.05533 * 180.27457 * 11 6 5 13 13 C 1.34776 * 119.99504 * 155.23195 * 12 11 6 14 14 O 1.21592 * 120.00386 * 354.21321 * 13 12 11 15 15 N 1.34779 * 119.99916 * 174.21111 * 13 12 11 16 16 C 1.46500 * 119.99776 * 0.02562 * 15 13 12 17 17 C 1.46501 * 119.99999 * 179.97438 * 15 13 12 18 18 C 1.50700 * 109.46694 * 90.00510 * 17 15 13 19 19 H 1.07999 * 120.00408 * 0.02562 * 18 17 15 20 20 C 1.37877 * 119.99759 * 179.97438 * 18 17 15 21 21 N 1.31506 * 120.00101 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99764 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47106 * 60.00061 * 22 20 18 24 24 H 1.48508 * 109.46957 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47036 * 299.99853 * 22 20 18 26 26 C 1.38626 * 119.97924 * 179.97438 * 3 2 1 27 27 H 1.08998 * 109.47205 * 300.00137 * 1 2 3 28 28 H 1.09002 * 109.47052 * 60.00465 * 1 2 3 29 29 H 1.09005 * 109.47449 * 179.97438 * 1 2 3 30 30 H 1.07995 * 119.94247 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.96829 * 180.25276 * 5 4 3 32 32 H 1.08997 * 109.47044 * 324.64410 * 8 7 6 33 33 H 1.08997 * 109.46980 * 299.99930 * 9 8 7 34 34 H 1.08994 * 109.46930 * 180.02562 * 9 8 7 35 35 H 1.09003 * 109.46936 * 60.00007 * 9 8 7 36 36 H 1.08997 * 109.47583 * 60.00125 * 10 8 7 37 37 H 1.09007 * 109.46892 * 180.02562 * 10 8 7 38 38 H 1.09002 * 109.47226 * 300.00063 * 10 8 7 39 39 H 0.96992 * 120.00042 * 335.22959 * 12 11 6 40 40 H 1.09004 * 109.47221 * 89.99578 * 16 15 13 41 41 H 1.08994 * 109.47088 * 209.99749 * 16 15 13 42 42 H 1.08999 * 109.47354 * 329.99721 * 16 15 13 43 43 H 1.08996 * 109.47066 * 209.99864 * 17 15 13 44 44 H 1.08993 * 109.47557 * 330.00569 * 17 15 13 45 45 H 0.97001 * 120.00004 * 179.97438 * 21 20 18 46 46 H 1.08003 * 120.03048 * 0.04484 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2903 2.3746 0.0005 5 6 1.9148 3.6078 0.0063 6 6 3.2978 3.6855 0.0009 7 8 3.9115 4.8997 0.0018 8 6 3.0722 6.0508 0.1145 9 6 3.7818 7.2611 -0.4960 10 6 2.7769 6.3239 1.5907 11 6 4.0595 2.5196 0.0004 12 7 5.4590 2.5954 0.0008 13 6 6.1891 1.5733 0.4894 14 8 5.6357 0.6324 1.0251 15 7 7.5326 1.5940 0.3841 16 6 8.1994 2.7278 -0.2610 17 6 8.3262 0.4832 0.9157 18 6 8.5103 -0.5604 -0.1558 19 1 8.0797 -0.4111 -1.1349 20 6 9.2295 -1.7055 0.1136 21 7 9.7551 -1.8868 1.3053 22 14 9.4583 -2.9988 -1.2147 23 1 10.1630 -2.3973 -2.3751 24 1 10.2627 -4.1249 -0.6759 25 1 8.1306 -3.5028 -1.6489 26 6 3.4308 1.2834 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2119 2.3165 0.0005 31 1 1.3238 4.5118 0.0108 32 1 2.1371 5.8720 -0.4161 33 1 4.7169 7.4399 0.0347 34 1 3.1418 8.1391 -0.4096 35 1 3.9923 7.0665 -1.5477 36 1 3.7120 6.5027 2.1214 37 1 2.1363 7.2017 1.6767 38 1 2.2714 5.4617 2.0257 39 1 5.9021 3.3834 -0.3506 40 1 8.4284 3.4877 0.4862 41 1 9.1234 2.3878 -0.7285 42 1 7.5424 3.1515 -1.0205 43 1 9.3009 0.8528 1.2341 44 1 7.8088 0.0420 1.7675 45 1 10.2608 -2.6926 1.4950 46 1 4.0191 0.3777 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176560806.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:37 Heat of formation + Delta-G solvation = -85.820600 kcal Electronic energy + Delta-G solvation = -27810.525871 eV Core-core repulsion = 23894.002728 eV Total energy + Delta-G solvation = -3916.523143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.04443 -40.83277 -40.08195 -37.86405 -36.62667 -35.62601 -34.60266 -33.87065 -31.42875 -30.16657 -29.21860 -28.20541 -27.78899 -27.35247 -25.32107 -24.48666 -22.86342 -21.90136 -20.91585 -19.94988 -18.85195 -18.69151 -18.65325 -17.46877 -17.31106 -16.71847 -16.61294 -16.43956 -16.29721 -15.69361 -15.64778 -15.29488 -14.90746 -14.66178 -14.42372 -14.26491 -13.93822 -13.67436 -13.51692 -13.43553 -13.37052 -13.17446 -13.08747 -12.93316 -12.80916 -12.73641 -12.54372 -12.27413 -12.18449 -12.09756 -11.78145 -11.65814 -11.47381 -11.10465 -10.85362 -10.63576 -9.63152 -9.28653 -8.50800 -8.20967 -6.36360 0.22182 0.43921 1.36102 1.41221 1.47901 1.64120 2.11591 2.22008 2.38357 2.46255 2.79689 3.05747 3.09995 3.75770 3.87360 4.00897 4.09331 4.13354 4.23835 4.26352 4.33686 4.44653 4.50485 4.57105 4.63858 4.72140 4.74940 4.76902 4.84309 4.88667 4.94653 4.95871 5.05451 5.15968 5.20268 5.23256 5.32864 5.36052 5.40614 5.54382 5.70320 5.78325 6.04762 6.06023 6.42277 6.59979 6.71489 7.00576 7.30187 7.58890 8.85109 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.003732 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.417082 B = 7500.228740 C = 9330.252758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.347 6.347 3 C 0.104 3.896 4 C -0.183 4.183 5 C -0.139 4.139 6 C 0.065 3.935 7 O -0.325 6.325 8 C 0.068 3.932 9 C -0.146 4.146 10 C -0.177 4.177 11 C 0.167 3.833 12 N -0.665 5.665 13 C 0.691 3.309 14 O -0.615 6.615 15 N -0.618 5.618 16 C 0.078 3.922 17 C 0.276 3.724 18 C -0.545 4.545 19 H 0.051 0.949 20 C 0.010 3.990 21 N -0.927 5.927 22 Si 0.967 3.033 23 H -0.259 1.259 24 H -0.276 1.276 25 H -0.281 1.281 26 C -0.166 4.166 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.166 0.834 31 H 0.173 0.827 32 H 0.091 0.909 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.421 0.579 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.032 0.968 44 H -0.001 1.001 45 H 0.268 0.732 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.384 20.531 -5.253 28.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.058 3.942 4 C -0.202 4.202 5 C -0.158 4.158 6 C 0.017 3.983 7 O -0.240 6.240 8 C 0.013 3.987 9 C -0.203 4.203 10 C -0.235 4.235 11 C 0.070 3.930 12 N -0.315 5.315 13 C 0.393 3.607 14 O -0.496 6.496 15 N -0.353 5.353 16 C -0.064 4.064 17 C 0.155 3.845 18 C -0.583 4.583 19 H 0.069 0.931 20 C -0.189 4.189 21 N -0.567 5.567 22 Si 0.791 3.209 23 H -0.184 1.184 24 H -0.201 1.201 25 H -0.207 1.207 26 C -0.188 4.188 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.130 0.870 30 H 0.183 0.817 31 H 0.190 0.810 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.070 0.930 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.018 0.982 45 H 0.077 0.923 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -19.224 19.606 -4.782 27.872 hybrid contribution 0.483 -0.823 -0.336 1.012 sum -18.742 18.783 -5.118 27.023 Atomic orbital electron populations 1.23365 0.76154 1.05402 1.02645 1.86096 1.23816 1.27103 1.89109 1.18760 0.90957 0.85518 0.98966 1.21262 1.01283 0.90290 1.07374 1.21144 0.91651 0.99470 1.03505 1.18362 0.91386 0.83948 1.04555 1.86073 1.37261 1.11800 1.88882 1.22761 0.94804 0.83777 0.97359 1.21876 1.01689 0.95537 1.01156 1.22356 1.02651 1.03073 0.95389 1.16714 0.81782 0.91374 1.03106 1.42445 1.03948 1.20654 1.64476 1.16117 0.82364 0.82578 0.79617 1.90840 1.70891 1.37123 1.50699 1.47375 1.03568 1.23586 1.60762 1.21891 0.99033 0.87724 0.97762 1.18717 0.89063 0.83288 0.93433 1.21675 1.33419 1.04788 0.98466 0.93122 1.25826 0.94997 1.00043 0.98070 1.70035 1.35847 1.28447 1.22331 0.85485 0.78008 0.78233 0.79170 1.18361 1.20059 1.20658 1.20378 0.93198 0.97542 1.07708 0.91297 0.90864 0.87036 0.81659 0.80986 0.89143 0.92142 0.88167 0.91778 0.92669 0.88542 0.92953 0.73970 0.90902 0.90404 0.90096 0.95020 0.98239 0.92320 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.44 16 2 O -0.35 -10.94 10.50 -93.28 -0.98 -11.92 16 3 C 0.10 3.36 6.68 22.48 0.15 3.51 16 4 C -0.18 -4.15 9.03 22.39 0.20 -3.95 16 5 C -0.14 -2.93 8.51 22.34 0.19 -2.73 16 6 C 0.06 1.77 6.58 22.58 0.15 1.91 16 7 O -0.32 -7.50 9.21 -94.15 -0.87 -8.37 16 8 C 0.07 0.98 2.87 30.60 0.09 1.07 16 9 C -0.15 -1.55 9.56 71.98 0.69 -0.86 16 10 C -0.18 -2.38 9.35 71.98 0.67 -1.70 16 11 C 0.17 6.01 6.45 38.16 0.25 6.26 16 12 N -0.67 -24.80 5.12 -316.83 -1.62 -26.42 16 13 C 0.69 32.93 8.08 179.05 1.45 34.38 16 14 O -0.62 -35.39 13.09 -4.01 -0.05 -35.44 16 15 N -0.62 -28.51 2.86 -869.32 -2.48 -30.99 16 16 C 0.08 2.53 10.15 127.77 1.30 3.83 16 17 C 0.28 15.63 5.16 85.63 0.44 16.07 16 18 C -0.54 -32.72 9.39 25.60 0.24 -32.48 16 19 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 20 C 0.01 0.58 5.46 84.66 0.46 1.04 16 21 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 22 Si 0.97 46.46 29.54 68.60 2.03 48.48 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 26 C -0.17 -6.73 8.65 22.47 0.19 -6.53 16 27 H 0.07 0.98 7.66 -2.39 -0.02 0.97 16 28 H 0.07 0.97 7.66 -2.39 -0.02 0.96 16 29 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.17 2.41 6.28 -2.91 -0.02 2.39 16 31 H 0.17 2.20 5.78 -2.91 -0.02 2.18 16 32 H 0.09 0.96 5.84 -2.39 -0.01 0.95 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.05 0.82 7.62 -2.39 -0.02 0.80 16 39 H 0.42 12.73 6.16 -92.71 -0.57 12.16 16 40 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.08 2.55 8.07 -2.39 -0.02 2.53 16 42 H 0.08 2.12 6.45 -2.39 -0.02 2.10 16 43 H 0.03 1.78 8.07 -2.39 -0.02 1.76 16 44 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 45 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.12 5.91 5.79 -2.91 -0.02 5.89 16 Total: -1.00 -83.23 376.57 4.32 -78.91 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.43 Total: 21.67 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 7.58 Total: 21.24 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -3.82 Total: -114.57 kcal Atomic # 8 Polarization: -53.83 SS G_CDS: -1.90 Total: -55.73 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.48 kcal Total: -83.23 4.32 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176560806.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.906 kcal (2) G-P(sol) polarization free energy of solvation -83.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds