Wall clock time and date at job start Tue Mar 31 2020 15:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46827 * 2 1 4 4 O 1.42898 * 109.47637 * 119.99954 * 2 1 3 5 5 C 1.42897 * 114.00270 * 149.99592 * 4 2 1 6 6 C 1.53004 * 109.46897 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46843 * 65.01107 * 6 5 4 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08996 * 109.47492 * 299.99860 * 1 2 3 28 28 H 1.09002 * 109.47342 * 59.99861 * 1 2 3 29 29 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47213 * 240.00525 * 2 1 3 31 31 H 1.09001 * 109.46795 * 60.00269 * 3 2 1 32 32 H 1.09002 * 109.47072 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47410 * 299.99680 * 3 2 1 34 34 H 1.09005 * 109.46903 * 60.00947 * 5 4 2 35 35 H 1.08994 * 109.47607 * 300.00915 * 5 4 2 36 36 H 1.08994 * 109.47328 * 305.00327 * 6 5 4 37 37 H 1.09002 * 109.46440 * 185.00219 * 6 5 4 38 38 H 0.96996 * 120.00042 * 359.97438 * 7 6 5 39 39 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 41 41 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 42 42 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 43 43 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 46 46 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6755 -2.0091 2.2941 7 7 2.7256 -3.0811 2.6022 8 6 2.8873 -3.8258 3.7138 9 8 3.8217 -3.6082 4.4606 10 7 2.0132 -4.8116 3.9974 11 6 2.1892 -5.6216 5.2054 12 6 1.0866 -6.6454 5.2888 13 6 1.2550 -7.8897 4.7090 14 6 0.2467 -8.8303 4.7841 15 6 -0.9377 -8.5254 5.4424 16 8 -1.9305 -9.4481 5.5184 17 6 -1.6614 -10.6780 5.0357 18 1 -0.7215 -10.8697 4.5397 19 6 -2.5916 -11.6967 5.1762 20 7 -3.7365 -11.4633 5.7808 21 14 -2.2186 -13.4007 4.5081 22 1 -0.8740 -13.4019 3.8777 23 1 -2.2454 -14.3850 5.6197 24 1 -3.2399 -13.7700 3.4953 25 6 -1.1063 -7.2730 6.0181 26 6 -0.0919 -6.3386 5.9445 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 4.0200 -0.5873 0.7124 35 1 3.1809 -2.0706 0.1985 36 1 3.6742 -1.2788 3.1033 37 1 4.6752 -2.4296 2.1857 38 1 1.9800 -3.2543 2.0065 39 1 1.2675 -4.9850 3.4017 40 1 2.1530 -4.9768 6.0835 41 1 3.1535 -6.1281 5.1660 42 1 2.1763 -8.1263 4.1977 43 1 0.3789 -9.8019 4.3316 44 1 -4.3873 -12.1758 5.8787 45 1 -2.0278 -7.0314 6.5268 46 1 -0.2206 -5.3660 6.3958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183306255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:46 Heat of formation + Delta-G solvation = -89.860175 kcal Electronic energy + Delta-G solvation = -25732.682825 eV Core-core repulsion = 21815.984512 eV Total energy + Delta-G solvation = -3916.698312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 19.60 seconds Orbital eigenvalues (eV) -39.98972 -39.11584 -38.75509 -36.90405 -35.18657 -34.26695 -32.92775 -32.34999 -30.33123 -30.17959 -28.82146 -27.62262 -25.83487 -24.66158 -22.81858 -22.03568 -21.75672 -20.91213 -20.59361 -18.46504 -18.05089 -17.43279 -17.02944 -16.53923 -15.78139 -15.43483 -15.28310 -14.70612 -14.68313 -14.47011 -14.44653 -13.87433 -13.73603 -13.63063 -13.42181 -13.26421 -12.95564 -12.86190 -12.76992 -12.62722 -12.44829 -12.02546 -11.89763 -11.67300 -11.59228 -11.38949 -11.11672 -10.96737 -10.75182 -10.67221 -10.47145 -10.19172 -9.99135 -9.41470 -9.26301 -8.91180 -8.70270 -8.26709 -7.31659 -6.52538 -4.11307 2.05022 2.14682 2.88634 3.08610 3.10042 3.15365 3.18904 3.32405 3.90691 4.29535 4.37916 4.55291 4.61181 4.65722 4.75477 4.79917 4.93774 5.02203 5.15247 5.18201 5.19565 5.27329 5.35649 5.42111 5.47251 5.50508 5.58801 5.69273 5.75707 5.80329 5.84825 5.97287 6.13799 6.37289 6.39237 6.60726 6.65375 6.81283 6.82143 6.92900 7.02495 7.17853 7.29710 7.36433 7.73126 7.92427 8.10337 8.68405 8.92991 9.61570 10.65134 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.001951 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.713021 B =14349.414877 C =15105.685083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.379 6.379 5 C 0.049 3.951 6 C 0.143 3.857 7 N -0.745 5.745 8 C 0.701 3.299 9 O -0.600 6.600 10 N -0.738 5.738 11 C 0.198 3.802 12 C -0.213 4.213 13 C -0.050 4.050 14 C -0.238 4.238 15 C 0.160 3.840 16 O -0.174 6.174 17 C -0.393 4.393 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.276 1.276 25 C -0.196 4.196 26 C -0.053 4.053 27 H 0.064 0.936 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.398 0.602 39 H 0.397 0.603 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.128 0.872 44 H 0.271 0.729 45 H 0.118 0.882 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.872 19.628 -12.481 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.023 3.977 3 C -0.233 4.233 4 O -0.298 6.298 5 C -0.028 4.028 6 C 0.019 3.981 7 N -0.402 5.402 8 C 0.401 3.599 9 O -0.479 6.479 10 N -0.393 5.393 11 C 0.075 3.925 12 C -0.214 4.214 13 C -0.069 4.069 14 C -0.257 4.257 15 C 0.106 3.894 16 O -0.077 6.077 17 C -0.469 4.469 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.494 5.494 21 Si 0.767 3.233 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.215 4.215 26 C -0.072 4.072 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.232 0.768 39 H 0.231 0.769 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.126 0.874 43 H 0.146 0.854 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.199 19.693 -11.445 25.381 hybrid contribution -0.377 -1.023 -1.195 1.618 sum 10.823 18.670 -12.640 25.009 Atomic orbital electron populations 1.21868 0.93404 1.02961 1.02605 1.22102 0.95205 0.92425 0.88010 1.22304 1.01443 0.96856 1.02710 1.88006 1.36233 1.69950 1.35629 1.22827 0.86700 0.95836 0.97420 1.21156 0.92354 0.88668 0.95937 1.45014 1.32327 1.36717 1.26145 1.16007 0.82813 0.79634 0.81429 1.90902 1.33621 1.72594 1.50766 1.45488 1.30339 1.35445 1.28002 1.19818 0.96524 0.90359 0.85795 1.19235 0.96927 0.95879 1.09408 1.20649 0.97396 0.92468 0.96407 1.21162 0.95190 1.01415 1.07919 1.19442 0.87836 0.90127 0.92012 1.83978 1.33515 1.19641 1.70554 1.21404 1.04618 0.83680 1.37182 0.88871 1.25323 0.94945 0.99547 0.96712 1.70044 1.06638 1.33642 1.39066 0.85627 0.78793 0.80300 0.78600 1.19048 1.20061 1.20105 1.20217 1.00816 0.92965 1.07489 1.20550 0.92148 0.97657 0.96876 0.91673 0.91280 0.91812 0.92238 0.91662 0.92538 0.91668 0.91696 0.92555 0.90864 0.90252 0.76791 0.76909 0.91751 0.91802 0.87391 0.85440 0.91946 0.86385 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.56 37.15 0.36 -0.56 16 2 C 0.08 0.51 3.34 -26.73 -0.09 0.42 16 3 C -0.18 -0.96 9.53 37.16 0.35 -0.61 16 4 O -0.38 -3.16 9.93 -35.23 -0.35 -3.51 16 5 C 0.05 0.32 5.88 37.16 0.22 0.54 16 6 C 0.14 1.29 6.06 -4.04 -0.02 1.27 16 7 N -0.75 -7.81 5.51 -65.23 -0.36 -8.17 16 8 C 0.70 9.86 8.57 -86.92 -0.74 9.12 16 9 O -0.60 -10.73 16.34 5.29 0.09 -10.64 16 10 N -0.74 -9.67 5.55 -66.42 -0.37 -10.04 16 11 C 0.20 2.88 5.80 -5.19 -0.03 2.85 16 12 C -0.21 -3.46 5.25 -104.58 -0.55 -4.01 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.24 -4.94 9.17 -39.39 -0.36 -5.30 16 15 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 16 O -0.17 -4.84 9.76 0.05 0.00 -4.84 16 17 C -0.39 -10.70 9.49 30.89 0.29 -10.41 16 18 H 0.09 2.35 5.20 -52.49 -0.27 2.07 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -24.72 13.67 55.48 0.76 -23.96 16 21 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 22 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 23 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 C -0.20 -3.97 9.99 -39.39 -0.39 -4.36 16 26 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.31 7.79 -51.93 -0.40 -0.09 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.29 7.87 -51.93 -0.41 -0.12 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.33 7.87 -51.93 -0.41 -0.08 16 35 H 0.06 0.31 8.08 -51.93 -0.42 -0.11 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.40 3.42 8.49 -40.82 -0.35 3.07 16 39 H 0.40 4.58 8.48 -40.82 -0.35 4.24 16 40 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 42 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 44 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.12 2.32 8.06 -52.49 -0.42 1.90 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -32.66 390.86 -8.57 -41.23 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.11 Total: 8.15 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: -2.10 Total: -9.16 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.03 Total: -42.17 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -0.26 Total: -18.99 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.66 -8.57 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183306255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.633 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.60 seconds