Wall clock time and date at job start Tue Mar 31 2020 15:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46827 * 2 1 4 4 O 1.42898 * 109.47637 * 119.99954 * 2 1 3 5 5 C 1.42897 * 114.00270 * 149.99592 * 4 2 1 6 6 C 1.53004 * 109.46897 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46843 * 65.01107 * 6 5 4 8 8 C 1.34778 * 119.99866 * 180.02562 * 7 6 5 9 9 O 1.21584 * 119.99654 * 359.97438 * 8 7 6 10 10 N 1.34769 * 119.99808 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47264 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47375 * 119.99795 * 21 19 17 24 24 H 1.48506 * 109.47301 * 239.99793 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.08996 * 109.47492 * 299.99860 * 1 2 3 28 28 H 1.09002 * 109.47342 * 59.99861 * 1 2 3 29 29 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47213 * 240.00525 * 2 1 3 31 31 H 1.09001 * 109.46795 * 60.00269 * 3 2 1 32 32 H 1.09002 * 109.47072 * 179.97438 * 3 2 1 33 33 H 1.08991 * 109.47410 * 299.99680 * 3 2 1 34 34 H 1.09005 * 109.46903 * 60.00947 * 5 4 2 35 35 H 1.08994 * 109.47607 * 300.00915 * 5 4 2 36 36 H 1.08994 * 109.47328 * 305.00327 * 6 5 4 37 37 H 1.09002 * 109.46440 * 185.00219 * 6 5 4 38 38 H 0.96996 * 120.00042 * 359.97438 * 7 6 5 39 39 H 0.97001 * 120.00514 * 359.97438 * 10 8 7 40 40 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 41 41 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 42 42 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 43 43 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 46 46 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6755 -2.0091 2.2941 7 7 2.7256 -3.0811 2.6022 8 6 2.8873 -3.8258 3.7138 9 8 3.8217 -3.6082 4.4606 10 7 2.0132 -4.8116 3.9974 11 6 2.1892 -5.6216 5.2054 12 6 1.0866 -6.6454 5.2888 13 6 1.2550 -7.8897 4.7090 14 6 0.2467 -8.8303 4.7841 15 6 -0.9377 -8.5254 5.4424 16 8 -1.9305 -9.4481 5.5184 17 6 -1.6614 -10.6780 5.0357 18 1 -0.7215 -10.8697 4.5397 19 6 -2.5916 -11.6967 5.1762 20 7 -3.7365 -11.4633 5.7808 21 14 -2.2186 -13.4007 4.5081 22 1 -0.8740 -13.4019 3.8777 23 1 -2.2454 -14.3850 5.6197 24 1 -3.2399 -13.7700 3.4953 25 6 -1.1063 -7.2730 6.0181 26 6 -0.0919 -6.3386 5.9445 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 4.0200 -0.5873 0.7124 35 1 3.1809 -2.0706 0.1985 36 1 3.6742 -1.2788 3.1033 37 1 4.6752 -2.4296 2.1857 38 1 1.9800 -3.2543 2.0065 39 1 1.2675 -4.9850 3.4017 40 1 2.1530 -4.9768 6.0835 41 1 3.1535 -6.1281 5.1660 42 1 2.1763 -8.1263 4.1977 43 1 0.3789 -9.8019 4.3316 44 1 -4.3873 -12.1758 5.8787 45 1 -2.0278 -7.0314 6.5268 46 1 -0.2206 -5.3660 6.3958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183306255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:33 Heat of formation + Delta-G solvation = -112.742984 kcal Electronic energy + Delta-G solvation = -25733.675098 eV Core-core repulsion = 21815.984512 eV Total energy + Delta-G solvation = -3917.690585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.14143 -40.67100 -39.38652 -38.52098 -36.07977 -35.53892 -34.27588 -33.50086 -31.84356 -31.50718 -29.74922 -28.07155 -27.60684 -26.11135 -23.63963 -23.56042 -22.23042 -22.17185 -21.90416 -19.89093 -19.50324 -18.81965 -18.01035 -17.42682 -16.73858 -16.50165 -16.35012 -16.07210 -16.02384 -15.73269 -15.55436 -15.25563 -15.17470 -14.91106 -14.45737 -14.37224 -14.10617 -13.91645 -13.65674 -13.44715 -13.36958 -13.11734 -13.03516 -12.95408 -12.56354 -12.37706 -12.33974 -12.22987 -12.13396 -12.08305 -11.58703 -11.38146 -11.19466 -10.81424 -10.51640 -10.34174 -9.81436 -9.69873 -9.01371 -8.48215 -6.16307 0.53474 0.58383 1.36204 1.43283 1.54155 1.86688 2.17172 2.20464 2.69131 2.81539 3.13653 3.47313 3.50863 3.87050 3.90442 4.04492 4.09400 4.15820 4.18328 4.25983 4.33182 4.48071 4.49021 4.57663 4.59069 4.74186 4.77217 4.81704 4.88696 4.93111 4.97922 4.99873 5.05069 5.15205 5.27486 5.32461 5.35351 5.48766 5.53249 5.55434 5.69460 5.76681 6.01890 6.04175 6.16968 6.33014 6.96736 7.12433 7.61885 7.76194 8.74862 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016796 B = 0.001951 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.713021 B =14349.414877 C =15105.685083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.076 3.924 3 C -0.174 4.174 4 O -0.402 6.402 5 C 0.055 3.945 6 C 0.141 3.859 7 N -0.732 5.732 8 C 0.699 3.301 9 O -0.639 6.639 10 N -0.731 5.731 11 C 0.204 3.796 12 C -0.181 4.181 13 C -0.044 4.044 14 C -0.243 4.243 15 C 0.123 3.877 16 O -0.229 6.229 17 C -0.413 4.413 18 H 0.104 0.896 19 C -0.023 4.023 20 N -0.919 5.919 21 Si 1.019 2.981 22 H -0.250 1.250 23 H -0.270 1.270 24 H -0.269 1.269 25 C -0.205 4.205 26 C -0.043 4.043 27 H 0.052 0.948 28 H 0.084 0.916 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.409 0.591 39 H 0.407 0.593 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.140 0.860 43 H 0.121 0.879 44 H 0.273 0.727 45 H 0.115 0.885 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.209 20.923 -14.366 28.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.018 3.982 3 C -0.231 4.231 4 O -0.322 6.322 5 C -0.022 4.022 6 C 0.017 3.983 7 N -0.388 5.388 8 C 0.399 3.601 9 O -0.521 6.521 10 N -0.387 5.387 11 C 0.080 3.920 12 C -0.182 4.182 13 C -0.063 4.063 14 C -0.263 4.263 15 C 0.072 3.928 16 O -0.135 6.135 17 C -0.489 4.489 18 H 0.121 0.879 19 C -0.221 4.221 20 N -0.557 5.557 21 Si 0.838 3.162 22 H -0.174 1.174 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.224 4.224 26 C -0.062 4.062 27 H 0.071 0.929 28 H 0.103 0.897 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.245 0.755 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.157 0.843 43 H 0.139 0.861 44 H 0.082 0.918 45 H 0.133 0.867 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 13.557 21.048 -13.377 28.386 hybrid contribution -0.887 -1.057 -0.615 1.511 sum 12.670 19.991 -13.991 27.494 Atomic orbital electron populations 1.21889 0.93538 1.02649 1.02791 1.22246 0.95174 0.92825 0.87913 1.22291 1.01679 0.96397 1.02758 1.87973 1.36939 1.70397 1.36929 1.22828 0.86698 0.96442 0.96202 1.21267 0.92382 0.87943 0.96717 1.44961 1.32698 1.36103 1.25060 1.16122 0.82308 0.79814 0.81846 1.90882 1.35255 1.73696 1.52269 1.45234 1.30595 1.35153 1.27687 1.19703 0.95619 0.89983 0.86654 1.19490 0.96651 0.95670 1.06376 1.20941 0.97492 0.91938 0.95900 1.21247 0.95249 1.02044 1.07727 1.19987 0.88505 0.90599 0.93717 1.83948 1.35838 1.20556 1.73207 1.21878 1.05282 0.84212 1.37484 0.87851 1.26593 0.94570 1.03918 0.96971 1.70184 1.08231 1.35219 1.42061 0.84525 0.79308 0.74348 0.78022 1.17359 1.19511 1.19371 1.20441 1.01855 0.92675 1.07419 1.20878 0.91179 0.98143 0.95989 0.92901 0.89717 0.92341 0.90742 0.92910 0.92140 0.90338 0.89885 0.90984 0.92577 0.89842 0.75486 0.75768 0.91401 0.91346 0.84252 0.86128 0.91815 0.86695 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.56 71.98 0.69 -0.91 16 2 C 0.08 0.79 3.34 30.59 0.10 0.89 16 3 C -0.17 -1.56 9.53 71.98 0.69 -0.88 16 4 O -0.40 -5.89 9.93 -148.98 -1.48 -7.37 16 5 C 0.05 0.58 5.88 71.98 0.42 1.00 16 6 C 0.14 2.26 6.06 86.38 0.52 2.78 16 7 N -0.73 -13.57 5.51 -478.54 -2.64 -16.20 16 8 C 0.70 17.93 8.57 179.06 1.53 19.46 16 9 O -0.64 -21.64 16.34 -3.98 -0.07 -21.70 16 10 N -0.73 -16.79 5.55 -482.31 -2.68 -19.47 16 11 C 0.20 5.20 5.80 85.63 0.50 5.70 16 12 C -0.18 -5.30 5.25 -19.84 -0.10 -5.40 16 13 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 14 C -0.24 -10.04 9.17 22.39 0.21 -9.83 16 15 C 0.12 5.87 6.65 22.58 0.15 6.02 16 16 O -0.23 -13.45 9.76 -22.72 -0.22 -13.68 16 17 C -0.41 -23.44 9.49 67.92 0.64 -22.79 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 19 C -0.02 -1.27 5.49 84.84 0.47 -0.81 16 20 N -0.92 -55.59 13.67 21.62 0.30 -55.29 16 21 Si 1.02 42.02 29.55 68.60 2.03 44.05 16 22 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 23 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 24 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 25 C -0.20 -8.30 9.99 22.39 0.22 -8.08 16 26 C -0.04 -1.37 9.69 22.25 0.22 -1.16 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 0.56 7.79 -2.39 -0.02 0.54 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.49 7.87 -2.39 -0.02 0.47 16 33 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.08 0.60 7.87 -2.38 -0.02 0.58 16 35 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.41 5.87 8.49 -92.71 -0.79 5.09 16 39 H 0.41 7.96 8.48 -92.71 -0.79 7.17 16 40 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 41 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 42 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 43 H 0.12 5.08 5.64 -2.91 -0.02 5.07 16 44 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 45 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 46 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -74.91 390.86 1.14 -73.77 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.57 Total: 31.08 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: 6.47 Total: -15.20 kcal Atomic # 7 Polarization: -85.95 SS G_CDS: -5.02 Total: -90.96 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -1.77 Total: -42.74 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -74.91 1.14 -73.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183306255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.968 kcal (2) G-P(sol) polarization free energy of solvation -74.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds