Wall clock time and date at job start Tue Mar 31 2020 15:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36066 * 116.99859 * 2 1 4 4 C 1.38550 * 120.00694 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.07106 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.07222 * 0.02562 * 5 4 3 7 7 N 1.40138 * 119.99383 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00334 * 326.30770 * 7 6 5 9 9 O 1.21594 * 120.00009 * 354.77366 * 8 7 6 10 10 N 1.34779 * 120.00323 * 174.78115 * 8 7 6 11 11 C 1.46500 * 119.99654 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00166 * 179.97438 * 10 8 7 13 13 C 1.50703 * 109.46977 * 89.99734 * 12 10 8 14 14 H 1.08007 * 119.99826 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00065 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00195 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99850 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47055 * 60.00337 * 17 15 13 19 19 H 1.48502 * 109.47132 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47375 * 300.00376 * 17 15 13 21 21 C 1.38802 * 120.00938 * 359.76646 * 6 5 4 22 22 C 1.38505 * 119.92876 * 0.48553 * 21 6 5 23 23 O 1.35994 * 120.03373 * 179.76723 * 22 21 6 24 24 C 1.42897 * 117.00353 * 2.38764 * 23 22 21 25 25 C 1.52996 * 109.47561 * 203.65717 * 24 23 22 26 26 C 1.52997 * 109.47148 * 83.65535 * 24 23 22 27 27 H 1.08996 * 109.47260 * 300.00211 * 1 2 3 28 28 H 1.09000 * 109.47232 * 60.00023 * 1 2 3 29 29 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.96519 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.96140 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99650 * 146.29968 * 7 6 5 33 33 H 1.08998 * 109.46909 * 90.00844 * 11 10 8 34 34 H 1.09000 * 109.46661 * 210.00103 * 11 10 8 35 35 H 1.08992 * 109.47257 * 329.99982 * 11 10 8 36 36 H 1.08997 * 109.47358 * 209.99373 * 12 10 8 37 37 H 1.08993 * 109.47217 * 330.00266 * 12 10 8 38 38 H 0.97004 * 120.00472 * 180.02562 * 16 15 13 39 39 H 1.07993 * 120.03526 * 180.27077 * 21 6 5 40 40 H 1.09000 * 109.46996 * 323.66116 * 24 23 22 41 41 H 1.09000 * 109.47291 * 300.00217 * 25 24 23 42 42 H 1.09001 * 109.47473 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.47178 * 59.99749 * 25 24 23 44 44 H 1.08999 * 109.47517 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.47525 * 300.00612 * 26 24 23 46 46 H 1.09000 * 109.47108 * 60.00048 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2124 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6065 0.0011 6 6 3.3044 3.6825 0.0005 7 7 3.9375 4.9327 0.0016 8 6 3.3753 5.9733 -0.6444 9 8 2.3695 5.8061 -1.3069 10 7 3.9280 7.1994 -0.5563 11 6 5.1396 7.4010 0.2422 12 6 3.3172 8.3305 -1.2591 13 6 2.3089 8.9963 -0.3583 14 1 2.1404 8.6152 0.6381 15 6 1.6025 10.0924 -0.8059 16 7 1.8081 10.5567 -2.0190 17 14 0.3533 10.9181 0.3109 18 1 1.0325 11.4057 1.5381 19 1 -0.2660 12.0645 -0.4014 20 1 -0.7001 9.9401 0.6837 21 6 4.0634 2.5203 0.0044 22 6 3.4362 1.2854 -0.0015 23 8 4.1778 0.1454 -0.0025 24 6 5.5977 0.2950 0.0556 25 6 6.2662 -0.9502 -0.5303 26 6 6.0329 0.4699 1.5119 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2137 2.3174 0.0005 31 1 1.3283 4.5112 0.0019 32 1 4.7803 5.0491 0.4675 33 1 6.0177 7.2501 -0.3856 34 1 5.1476 8.4157 0.6402 35 1 5.1547 6.6875 1.0659 36 1 4.0901 9.0487 -1.5325 37 1 2.8189 7.9723 -2.1598 38 1 1.3113 11.3282 -2.3338 39 1 5.1417 2.5790 0.0084 40 1 5.8946 1.1717 -0.5200 41 1 5.9694 -1.8269 0.0453 42 1 7.3493 -0.8359 -0.4864 43 1 5.9562 -1.0748 -1.5679 44 1 7.1159 0.5845 1.5563 45 1 5.5566 1.3570 1.9295 46 1 5.7360 -0.4067 2.0877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184211511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:10 Heat of formation + Delta-G solvation = -64.739869 kcal Electronic energy + Delta-G solvation = -27482.029233 eV Core-core repulsion = 23566.420219 eV Total energy + Delta-G solvation = -3915.609014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.77104 -39.63905 -38.70322 -37.01832 -34.86867 -34.07247 -33.15174 -32.46688 -30.12388 -29.03151 -27.78756 -27.48667 -26.86687 -25.71091 -23.43464 -23.30435 -21.73493 -20.96897 -19.46265 -18.67899 -17.74741 -17.30864 -16.57553 -16.26731 -16.09968 -15.81016 -15.25109 -14.87716 -14.81546 -14.66854 -14.45165 -14.07447 -13.61779 -13.40048 -13.17116 -12.95286 -12.73866 -12.57588 -12.52998 -12.30235 -12.19347 -12.06670 -11.92797 -11.81104 -11.27034 -11.21325 -11.12215 -10.98881 -10.92712 -10.76901 -10.57981 -10.17062 -9.70498 -9.56158 -9.24592 -8.46662 -8.44494 -7.75481 -7.27999 -6.05325 -4.10311 1.35533 1.59014 3.06475 3.18556 3.31087 3.35718 3.36055 3.39760 3.65059 4.05844 4.38217 4.51322 4.55154 4.68419 4.77337 4.91396 5.01426 5.14898 5.15905 5.27825 5.28580 5.35500 5.39719 5.43563 5.47360 5.48288 5.51445 5.55908 5.63591 5.80378 5.83516 5.91107 5.93170 6.09505 6.41460 6.46905 6.61385 6.82283 7.09107 7.10587 7.33545 7.47605 7.63982 7.66826 7.92277 8.21410 8.55069 8.90252 9.21583 9.55099 11.02546 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.003015 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.857383 B = 9286.038381 C =10492.164587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C 0.069 3.931 4 C -0.148 4.148 5 C -0.117 4.117 6 C 0.188 3.812 7 N -0.695 5.695 8 C 0.697 3.303 9 O -0.566 6.566 10 N -0.612 5.612 11 C 0.083 3.917 12 C 0.260 3.740 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C -0.213 4.213 22 C 0.122 3.878 23 O -0.299 6.299 24 C 0.073 3.927 25 C -0.147 4.147 26 C -0.179 4.179 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.401 0.599 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.034 0.966 37 H 0.046 0.954 38 H 0.264 0.736 39 H 0.136 0.864 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.063 0.937 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.155 -20.713 6.654 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.023 3.977 4 C -0.167 4.167 5 C -0.137 4.137 6 C 0.091 3.909 7 N -0.345 5.345 8 C 0.399 3.601 9 O -0.442 6.442 10 N -0.347 5.347 11 C -0.062 4.062 12 C 0.141 3.859 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.726 3.274 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.234 4.234 22 C 0.076 3.924 23 O -0.213 6.213 24 C 0.017 3.983 25 C -0.204 4.204 26 C -0.236 4.236 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.153 0.847 31 H 0.163 0.837 32 H 0.237 0.763 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.154 0.846 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.401 -20.922 6.003 22.990 hybrid contribution -0.291 1.057 0.870 1.399 sum 7.110 -19.865 6.872 22.190 Atomic orbital electron populations 1.23007 0.79055 1.03458 1.01280 1.86128 1.20574 1.26025 1.89741 1.18126 0.88959 0.85083 1.05546 1.20951 0.99893 0.90905 1.04970 1.21053 0.93259 0.98306 1.01116 1.17144 0.91444 0.83650 0.98626 1.42972 1.26662 1.08080 1.56768 1.15920 0.83458 0.80385 0.80355 1.90911 1.25502 1.83116 1.44679 1.47504 1.27831 1.07673 1.51730 1.21602 0.87250 1.02985 0.94340 1.19250 0.92972 0.80987 0.92724 1.21414 1.22057 1.12723 1.00497 0.92513 1.24923 0.96984 0.96916 0.95215 1.69916 1.41953 1.24881 1.16634 0.86556 0.81568 0.78822 0.80449 1.20282 1.21167 1.20173 1.20650 0.99921 0.90154 1.12723 1.17737 0.87906 0.85358 1.01431 1.86217 1.18162 1.28217 1.88740 1.22421 0.79194 0.99818 0.96876 1.21823 0.99870 0.96929 1.01756 1.22361 1.01761 1.03219 0.96286 0.92885 0.92777 0.88630 0.84666 0.83690 0.76312 0.93684 0.90227 0.93074 0.94779 0.93645 0.92621 0.84634 0.90895 0.91535 0.90687 0.91653 0.91185 0.91792 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.28 10.28 -34.55 -0.36 -4.64 16 3 C 0.07 1.01 6.70 -39.13 -0.26 0.75 16 4 C -0.15 -2.18 9.03 -39.48 -0.36 -2.54 16 5 C -0.12 -2.00 8.65 -39.38 -0.34 -2.34 16 6 C 0.19 3.03 6.27 -83.63 -0.52 2.50 16 7 N -0.69 -11.31 5.18 -14.20 -0.07 -11.38 16 8 C 0.70 14.81 8.01 -86.92 -0.70 14.11 16 9 O -0.57 -14.41 13.63 5.28 0.07 -14.33 16 10 N -0.61 -12.88 2.86 -188.75 -0.54 -13.42 16 11 C 0.08 1.25 10.16 59.85 0.61 1.86 16 12 C 0.26 6.75 5.16 -5.19 -0.03 6.72 16 13 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 14 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 15 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 17 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.21 -2.90 8.25 -39.27 -0.32 -3.22 16 22 C 0.12 1.75 6.57 -39.14 -0.26 1.49 16 23 O -0.30 -3.97 9.59 -34.32 -0.33 -4.30 16 24 C 0.07 0.70 2.86 -26.73 -0.08 0.62 16 25 C -0.15 -1.11 9.56 37.16 0.36 -0.76 16 26 C -0.18 -1.44 9.25 37.16 0.34 -1.10 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 28 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 29 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.14 1.68 6.29 -52.49 -0.33 1.35 16 31 H 0.15 2.86 6.43 -52.49 -0.34 2.53 16 32 H 0.40 5.06 6.63 -40.82 -0.27 4.79 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 35 H 0.05 0.62 6.45 -51.93 -0.33 0.29 16 36 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 37 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.14 1.49 5.66 -52.49 -0.30 1.19 16 40 H 0.07 0.67 6.01 -51.93 -0.31 0.36 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.56 7.32 -51.93 -0.38 0.18 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -34.77 377.60 -7.59 -42.36 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -6.79 Total: 3.18 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.99 Total: 5.83 kcal Atomic # 7 Polarization: -50.64 SS G_CDS: 0.12 Total: -50.52 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.61 Total: -23.27 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.77 -7.59 -42.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184211511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.380 kcal (2) G-P(sol) polarization free energy of solvation -34.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds