Wall clock time and date at job start Tue Mar 31 2020 15:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36066 * 116.99859 * 2 1 4 4 C 1.38550 * 120.00694 * 0.02562 * 3 2 1 5 5 C 1.38196 * 120.07106 * 179.97438 * 4 3 2 6 6 C 1.38836 * 120.07222 * 0.02562 * 5 4 3 7 7 N 1.40138 * 119.99383 * 180.02562 * 6 5 4 8 8 C 1.34772 * 120.00334 * 326.30770 * 7 6 5 9 9 O 1.21594 * 120.00009 * 354.77366 * 8 7 6 10 10 N 1.34779 * 120.00323 * 174.78115 * 8 7 6 11 11 C 1.46500 * 119.99654 * 359.97438 * 10 8 7 12 12 C 1.46500 * 120.00166 * 179.97438 * 10 8 7 13 13 C 1.50703 * 109.46977 * 89.99734 * 12 10 8 14 14 H 1.08007 * 119.99826 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00065 * 179.97438 * 13 12 10 16 16 N 1.31507 * 120.00195 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99850 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47055 * 60.00337 * 17 15 13 19 19 H 1.48502 * 109.47132 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47375 * 300.00376 * 17 15 13 21 21 C 1.38802 * 120.00938 * 359.76646 * 6 5 4 22 22 C 1.38505 * 119.92876 * 0.48553 * 21 6 5 23 23 O 1.35994 * 120.03373 * 179.76723 * 22 21 6 24 24 C 1.42897 * 117.00353 * 2.38764 * 23 22 21 25 25 C 1.52996 * 109.47561 * 203.65717 * 24 23 22 26 26 C 1.52997 * 109.47148 * 83.65535 * 24 23 22 27 27 H 1.08996 * 109.47260 * 300.00211 * 1 2 3 28 28 H 1.09000 * 109.47232 * 60.00023 * 1 2 3 29 29 H 1.09004 * 109.46999 * 179.97438 * 1 2 3 30 30 H 1.07997 * 119.96519 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.96140 * 180.02562 * 5 4 3 32 32 H 0.97004 * 119.99650 * 146.29968 * 7 6 5 33 33 H 1.08998 * 109.46909 * 90.00844 * 11 10 8 34 34 H 1.09000 * 109.46661 * 210.00103 * 11 10 8 35 35 H 1.08992 * 109.47257 * 329.99982 * 11 10 8 36 36 H 1.08997 * 109.47358 * 209.99373 * 12 10 8 37 37 H 1.08993 * 109.47217 * 330.00266 * 12 10 8 38 38 H 0.97004 * 120.00472 * 180.02562 * 16 15 13 39 39 H 1.07993 * 120.03526 * 180.27077 * 21 6 5 40 40 H 1.09000 * 109.46996 * 323.66116 * 24 23 22 41 41 H 1.09000 * 109.47291 * 300.00217 * 25 24 23 42 42 H 1.09001 * 109.47473 * 179.97438 * 25 24 23 43 43 H 1.09004 * 109.47178 * 59.99749 * 25 24 23 44 44 H 1.08999 * 109.47517 * 180.02562 * 26 24 23 45 45 H 1.09000 * 109.47525 * 300.00612 * 26 24 23 46 46 H 1.09000 * 109.47108 * 60.00048 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0466 1.2124 0.0000 4 6 1.2922 2.3744 0.0005 5 6 1.9181 3.6065 0.0011 6 6 3.3044 3.6825 0.0005 7 7 3.9375 4.9327 0.0016 8 6 3.3753 5.9733 -0.6444 9 8 2.3695 5.8061 -1.3069 10 7 3.9280 7.1994 -0.5563 11 6 5.1396 7.4010 0.2422 12 6 3.3172 8.3305 -1.2591 13 6 2.3089 8.9963 -0.3583 14 1 2.1404 8.6152 0.6381 15 6 1.6025 10.0924 -0.8059 16 7 1.8081 10.5567 -2.0190 17 14 0.3533 10.9181 0.3109 18 1 1.0325 11.4057 1.5381 19 1 -0.2660 12.0645 -0.4014 20 1 -0.7001 9.9401 0.6837 21 6 4.0634 2.5203 0.0044 22 6 3.4362 1.2854 -0.0015 23 8 4.1778 0.1454 -0.0025 24 6 5.5977 0.2950 0.0556 25 6 6.2662 -0.9502 -0.5303 26 6 6.0329 0.4699 1.5119 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2137 2.3174 0.0005 31 1 1.3283 4.5112 0.0019 32 1 4.7803 5.0491 0.4675 33 1 6.0177 7.2501 -0.3856 34 1 5.1476 8.4157 0.6402 35 1 5.1547 6.6875 1.0659 36 1 4.0901 9.0487 -1.5325 37 1 2.8189 7.9723 -2.1598 38 1 1.3113 11.3282 -2.3338 39 1 5.1417 2.5790 0.0084 40 1 5.8946 1.1717 -0.5200 41 1 5.9694 -1.8269 0.0453 42 1 7.3493 -0.8359 -0.4864 43 1 5.9562 -1.0748 -1.5679 44 1 7.1159 0.5845 1.5563 45 1 5.5566 1.3570 1.9295 46 1 5.7360 -0.4067 2.0877 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184211511.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:08 Heat of formation + Delta-G solvation = -87.259883 kcal Electronic energy + Delta-G solvation = -27483.005774 eV Core-core repulsion = 23566.420219 eV Total energy + Delta-G solvation = -3916.585555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.97234 -41.04403 -39.66602 -38.27755 -36.58571 -35.47388 -34.56783 -33.90665 -31.27265 -30.33560 -29.40199 -28.15881 -27.85808 -27.23869 -25.15143 -24.42457 -23.11436 -21.91947 -20.86482 -19.82454 -19.09921 -18.67380 -18.52734 -17.45473 -17.34522 -16.82877 -16.66543 -16.36954 -16.06070 -15.80339 -15.63234 -15.52205 -14.86397 -14.59583 -14.44074 -14.14984 -13.84417 -13.79314 -13.64532 -13.47395 -13.31496 -13.14533 -13.08224 -12.89405 -12.80600 -12.62383 -12.52561 -12.31772 -12.17671 -12.07084 -11.85709 -11.73744 -11.54559 -11.12186 -10.74249 -10.63064 -9.64605 -9.43170 -8.50468 -8.20471 -6.35876 0.20517 0.37559 1.37209 1.41377 1.48388 1.67609 2.14093 2.22939 2.38250 2.40222 2.75589 3.04420 3.09490 3.76535 3.85570 4.01796 4.03488 4.14836 4.20851 4.27996 4.30393 4.42343 4.43913 4.48376 4.61779 4.66555 4.74759 4.75818 4.83498 4.88436 4.90147 4.94767 4.97883 5.19413 5.24520 5.25571 5.31217 5.33986 5.40148 5.54869 5.78434 5.79843 6.06609 6.07384 6.16195 6.62872 6.72612 7.04181 7.31100 7.62047 8.85395 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016420 B = 0.003015 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.857383 B = 9286.038381 C =10492.164587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.324 6.324 3 C 0.065 3.935 4 C -0.147 4.147 5 C -0.141 4.141 6 C 0.168 3.832 7 N -0.672 5.672 8 C 0.693 3.307 9 O -0.618 6.618 10 N -0.619 5.619 11 C 0.076 3.924 12 C 0.276 3.724 13 C -0.543 4.543 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.928 5.928 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.195 4.195 22 C 0.120 3.880 23 O -0.312 6.312 24 C 0.061 3.939 25 C -0.144 4.144 26 C -0.175 4.175 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.121 0.879 30 H 0.152 0.848 31 H 0.111 0.889 32 H 0.420 0.580 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.030 0.970 37 H -0.001 1.001 38 H 0.267 0.733 39 H 0.166 0.834 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.057 0.943 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.659 -22.091 8.372 25.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.019 3.981 4 C -0.166 4.166 5 C -0.162 4.162 6 C 0.072 3.928 7 N -0.324 5.324 8 C 0.395 3.605 9 O -0.498 6.498 10 N -0.354 5.354 11 C -0.066 4.066 12 C 0.155 3.845 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.190 4.190 16 N -0.568 5.568 17 Si 0.790 3.210 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.205 1.205 21 C -0.217 4.217 22 C 0.073 3.927 23 O -0.227 6.227 24 C 0.006 3.994 25 C -0.201 4.201 26 C -0.233 4.233 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.140 0.860 30 H 0.169 0.831 31 H 0.129 0.871 32 H 0.260 0.740 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.104 0.896 36 H 0.048 0.952 37 H 0.018 0.982 38 H 0.076 0.924 39 H 0.183 0.817 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.077 0.923 44 H 0.113 0.887 45 H 0.074 0.926 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.974 -22.342 7.774 25.300 hybrid contribution -0.724 1.306 0.319 1.527 sum 8.250 -21.035 8.093 24.001 Atomic orbital electron populations 1.23313 0.76985 1.05451 1.01916 1.86117 1.22783 1.25452 1.89502 1.18310 0.89563 0.85358 1.04877 1.21026 1.00842 0.90175 1.04595 1.20900 0.93949 0.97912 1.03428 1.17282 0.91326 0.84054 1.00131 1.42550 1.26976 1.06995 1.55873 1.16080 0.82979 0.81182 0.80265 1.90873 1.27915 1.84074 1.46951 1.47357 1.29376 1.06513 1.52125 1.21922 0.85590 1.03854 0.95232 1.18702 0.92452 0.82054 0.91338 1.21686 1.22873 1.13094 1.00544 0.92967 1.25819 0.98888 0.97582 0.96690 1.70034 1.43027 1.25404 1.18289 0.85497 0.78798 0.77683 0.79002 1.18464 1.20330 1.20472 1.20778 1.01119 0.88804 1.10962 1.17913 0.88161 0.85995 1.00628 1.86227 1.20193 1.27793 1.88443 1.22803 0.77314 1.01101 0.98221 1.21859 1.01235 0.95949 1.01075 1.22347 1.03303 1.02682 0.94921 0.91902 0.92471 0.86038 0.83050 0.87108 0.73992 0.90732 0.90753 0.89577 0.95165 0.98243 0.92366 0.81698 0.90282 0.91654 0.88105 0.92350 0.88663 0.92557 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.59 10.28 -80.34 -0.83 -9.42 16 3 C 0.06 1.88 6.70 22.56 0.15 2.03 16 4 C -0.15 -4.40 9.03 22.33 0.20 -4.19 16 5 C -0.14 -5.02 8.65 22.40 0.19 -4.82 16 6 C 0.17 5.37 6.27 38.09 0.24 5.61 16 7 N -0.67 -21.43 5.18 -317.09 -1.64 -23.07 16 8 C 0.69 30.09 8.01 179.06 1.44 31.53 16 9 O -0.62 -33.19 13.63 -4.01 -0.05 -33.25 16 10 N -0.62 -26.34 2.86 -869.33 -2.48 -28.82 16 11 C 0.08 2.17 10.16 127.77 1.30 3.47 16 12 C 0.28 14.89 5.16 85.63 0.44 15.33 16 13 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 14 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 15 C 0.01 0.54 5.46 84.66 0.46 1.00 16 16 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 17 Si 0.97 44.94 29.54 68.60 2.03 46.96 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 C -0.20 -5.01 8.25 22.47 0.19 -4.83 16 22 C 0.12 3.28 6.57 22.55 0.15 3.43 16 23 O -0.31 -7.74 9.59 -79.53 -0.76 -8.51 16 24 C 0.06 1.01 2.86 30.59 0.09 1.10 16 25 C -0.14 -1.81 9.56 71.98 0.69 -1.12 16 26 C -0.18 -2.32 9.25 71.98 0.67 -1.65 16 27 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 28 H 0.06 0.98 7.66 -2.39 -0.02 0.96 16 29 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.15 3.81 6.29 -2.91 -0.02 3.79 16 31 H 0.11 4.72 6.43 -2.91 -0.02 4.70 16 32 H 0.42 9.62 6.63 -92.71 -0.61 9.01 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 35 H 0.09 1.83 6.45 -2.39 -0.02 1.82 16 36 H 0.03 1.63 8.07 -2.39 -0.02 1.61 16 37 H 0.00 -0.04 7.42 -2.39 -0.02 -0.05 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 39 H 0.17 3.12 5.66 -2.91 -0.02 3.11 16 40 H 0.08 1.20 6.01 -2.39 -0.01 1.19 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 0.84 7.32 -2.39 -0.02 0.82 16 46 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -79.27 377.60 4.48 -74.79 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.38 Total: 19.89 kcal Atomic # 6 Polarization: 9.66 SS G_CDS: 7.55 Total: 17.21 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -3.84 Total: -107.69 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -1.64 Total: -51.17 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -79.27 4.48 -74.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184211511.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.469 kcal (2) G-P(sol) polarization free energy of solvation -79.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds