Wall clock time and date at job start Tue Mar 31 2020 15:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35991 * 117.00062 * 2 1 4 4 C 1.38502 * 120.04072 * 0.02562 * 3 2 1 5 5 C 1.38800 * 119.93588 * 179.97438 * 4 3 2 6 6 N 1.40144 * 119.99946 * 179.97438 * 5 4 3 7 7 C 1.34772 * 119.99850 * 216.08683 * 6 5 4 8 8 O 1.21587 * 120.00482 * 355.22038 * 7 6 5 9 9 N 1.34780 * 119.99516 * 175.22262 * 7 6 5 10 10 C 1.46502 * 120.00138 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99699 * 180.02562 * 9 7 6 12 12 C 1.50698 * 109.47323 * 90.00199 * 11 9 7 13 13 H 1.07997 * 120.00149 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99991 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00163 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47136 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47108 * 119.99553 * 16 14 12 19 19 H 1.48492 * 109.47144 * 239.99605 * 16 14 12 20 20 C 1.38838 * 120.00590 * 0.02562 * 5 4 3 21 21 C 1.38195 * 120.07539 * 359.73926 * 20 5 4 22 22 C 1.38551 * 120.06660 * 0.50992 * 21 20 5 23 23 O 1.36069 * 120.00663 * 179.76583 * 22 21 20 24 24 C 1.42901 * 116.99511 * 5.28264 * 23 22 21 25 25 C 1.52988 * 109.47295 * 274.62515 * 24 23 22 26 26 C 1.53000 * 109.46759 * 154.62491 * 24 23 22 27 27 H 1.09004 * 109.46774 * 300.00308 * 1 2 3 28 28 H 1.09004 * 109.47229 * 59.99517 * 1 2 3 29 29 H 1.08997 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.03274 * 359.96088 * 4 3 2 31 31 H 0.96997 * 119.99242 * 36.08755 * 6 5 4 32 32 H 1.09005 * 109.46468 * 90.00310 * 10 9 7 33 33 H 1.08994 * 109.47004 * 209.99674 * 10 9 7 34 34 H 1.08996 * 109.47081 * 330.00292 * 10 9 7 35 35 H 1.09004 * 109.47186 * 209.99876 * 11 9 7 36 36 H 1.09000 * 109.47045 * 329.99373 * 11 9 7 37 37 H 0.96995 * 120.00108 * 180.02562 * 15 14 12 38 38 H 1.08003 * 119.95793 * 179.97438 * 20 5 4 39 39 H 1.07994 * 119.96671 * 180.27510 * 21 20 5 40 40 H 1.08997 * 109.46951 * 34.63322 * 24 23 22 41 41 H 1.09008 * 109.47427 * 60.00424 * 25 24 23 42 42 H 1.08997 * 109.47779 * 300.00299 * 25 24 23 43 43 H 1.08996 * 109.47438 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47353 * 179.97438 * 26 24 23 45 45 H 1.08994 * 109.47552 * 300.00405 * 26 24 23 46 46 H 1.09007 * 109.47095 * 60.00042 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2929 2.3738 0.0005 5 6 1.9253 3.6094 0.0011 6 7 1.1642 4.7861 0.0011 7 6 1.5905 5.8643 -0.6860 8 8 2.6757 5.8461 -1.2338 9 7 0.8136 6.9629 -0.7657 10 6 -0.4943 6.9846 -0.1060 11 6 1.2767 8.1347 -1.5130 12 6 0.8311 8.0236 -2.9483 13 1 0.2603 7.1657 -3.2717 14 6 1.1529 9.0168 -3.8489 15 7 1.8483 10.0613 -3.4554 16 14 0.6011 8.8787 -5.6282 17 1 -0.1607 7.6175 -5.8138 18 1 -0.2654 10.0356 -5.9690 19 1 1.7910 8.8729 -6.5165 20 6 3.3119 3.6796 0.0005 21 6 4.0641 2.5203 0.0049 22 6 3.4360 1.2853 -0.0008 23 8 4.1778 0.1446 -0.0013 24 6 5.5939 0.2918 0.1215 25 6 6.2031 0.5360 -1.2605 26 6 6.1888 -0.9831 0.7230 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2142 2.3187 0.0003 31 1 0.3306 4.8244 0.4956 32 1 -0.3820 7.3607 0.9109 33 1 -1.1704 7.6347 -0.6612 34 1 -0.9033 5.9748 -0.0769 35 1 0.8555 9.0375 -1.0707 36 1 2.3649 8.1843 -1.4732 37 1 2.0744 10.7601 -4.0889 38 1 3.8032 4.6414 0.0005 39 1 5.1425 2.5770 0.0090 40 1 5.8163 1.1381 0.7713 41 1 5.7793 1.4443 -1.6891 42 1 5.9807 -0.3103 -1.9104 43 1 7.2832 0.6478 -1.1670 44 1 7.2690 -0.8711 0.8162 45 1 5.7548 -1.1571 1.7075 46 1 5.9664 -1.8295 0.0731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186257114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:16 Heat of formation + Delta-G solvation = -64.827418 kcal Electronic energy + Delta-G solvation = -27417.648188 eV Core-core repulsion = 23502.035377 eV Total energy + Delta-G solvation = -3915.612810 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.74997 -39.64684 -38.70281 -37.01300 -34.87219 -34.12718 -33.03133 -32.43761 -30.18192 -28.99266 -27.73882 -27.50536 -26.90072 -25.72347 -23.44201 -23.08235 -21.93694 -20.80969 -19.53365 -18.66790 -17.78202 -17.35366 -16.55934 -16.21628 -15.94556 -15.80153 -15.25007 -14.92053 -14.80806 -14.64880 -14.61061 -14.07168 -13.57022 -13.39437 -13.13968 -12.92244 -12.81550 -12.52098 -12.45474 -12.30943 -12.20316 -11.95236 -11.89122 -11.70014 -11.37391 -11.20953 -11.13979 -11.01042 -10.86001 -10.70089 -10.60398 -10.15899 -9.69710 -9.51065 -9.20894 -8.48933 -8.44511 -7.75884 -7.28895 -6.05275 -4.09754 1.35210 1.58880 3.09187 3.21699 3.29459 3.30822 3.37438 3.42349 3.66435 4.02639 4.39524 4.52227 4.62733 4.75174 4.83304 4.94058 4.97560 5.07745 5.17394 5.28978 5.32817 5.35344 5.39649 5.41652 5.46909 5.53114 5.56549 5.62871 5.64836 5.81945 5.87779 5.92738 6.04291 6.09563 6.42859 6.47259 6.60115 6.81976 7.06978 7.12507 7.33127 7.47900 7.64785 7.67311 7.92757 8.21848 8.55585 8.91360 9.22148 9.55776 11.02693 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002975 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.249535 B = 9408.619576 C =10101.229067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.307 6.307 3 C 0.113 3.887 4 C -0.206 4.206 5 C 0.182 3.818 6 N -0.695 5.695 7 C 0.698 3.302 8 O -0.567 6.567 9 N -0.612 5.612 10 C 0.083 3.917 11 C 0.259 3.741 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.898 3.102 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.282 1.282 20 C -0.113 4.113 21 C -0.154 4.154 22 C 0.078 3.922 23 O -0.303 6.303 24 C 0.076 3.924 25 C -0.182 4.182 26 C -0.146 4.146 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.401 0.599 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.050 0.950 35 H 0.035 0.965 36 H 0.046 0.954 37 H 0.263 0.737 38 H 0.147 0.853 39 H 0.137 0.863 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.441 -19.327 11.766 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.220 6.220 3 C 0.067 3.933 4 C -0.228 4.228 5 C 0.086 3.914 6 N -0.346 5.346 7 C 0.400 3.600 8 O -0.443 6.443 9 N -0.348 5.348 10 C -0.061 4.061 11 C 0.140 3.860 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.726 3.274 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.208 1.208 20 C -0.134 4.134 21 C -0.174 4.174 22 C 0.032 3.968 23 O -0.218 6.218 24 C 0.019 3.981 25 C -0.239 4.239 26 C -0.203 4.203 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.152 0.848 31 H 0.237 0.763 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.165 0.835 39 H 0.155 0.845 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.293 -19.420 11.236 22.473 hybrid contribution -1.002 0.435 -0.897 1.413 sum 0.291 -18.985 10.338 21.620 Atomic orbital electron populations 1.23029 0.78964 1.03615 1.01251 1.86156 1.20692 1.25876 1.89294 1.17811 0.88857 0.84475 1.02171 1.20680 0.99785 0.90356 1.11943 1.17148 0.90587 0.84490 0.99169 1.42926 1.26366 1.11305 1.53967 1.15909 0.84666 0.79951 0.79512 1.90887 1.21300 1.81274 1.50857 1.47503 1.17195 1.15570 1.54491 1.21599 0.86324 1.01140 0.97077 1.19261 0.96837 0.79925 0.89971 1.21487 1.34801 1.05941 0.94242 0.92462 1.24926 0.95039 0.95179 0.98957 1.69936 1.38599 1.09698 1.35182 0.86442 0.78442 0.77853 0.84683 1.19850 1.20967 1.20841 1.21140 0.92211 0.99362 1.00679 1.21001 1.00319 0.90590 1.05444 1.18088 0.87967 0.86054 1.04658 1.86187 1.18373 1.28451 1.88752 1.22390 0.79119 0.99425 0.97144 1.22393 1.01119 1.03316 0.97088 1.21828 1.00341 0.96730 1.01445 0.92864 0.92730 0.88488 0.84788 0.76297 0.93623 0.90267 0.93140 0.94738 0.93624 0.92751 0.83490 0.84547 0.90986 0.91496 0.91543 0.91198 0.90748 0.91788 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.12 10.28 -34.31 -0.35 -4.47 16 3 C 0.11 1.64 6.70 -39.14 -0.26 1.38 16 4 C -0.21 -2.85 8.95 -39.28 -0.35 -3.21 16 5 C 0.18 2.94 6.28 -83.63 -0.53 2.41 16 6 N -0.70 -11.32 5.18 -14.20 -0.07 -11.39 16 7 C 0.70 14.83 8.12 -86.92 -0.71 14.12 16 8 O -0.57 -14.37 13.41 5.29 0.07 -14.30 16 9 N -0.61 -12.91 2.86 -188.74 -0.54 -13.45 16 10 C 0.08 1.26 10.16 59.85 0.61 1.87 16 11 C 0.26 6.73 5.16 -5.19 -0.03 6.71 16 12 C -0.53 -14.92 9.39 -34.44 -0.32 -15.25 16 13 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 14 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 16 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 20 C -0.11 -1.89 8.69 -39.38 -0.34 -2.24 16 21 C -0.15 -2.23 8.26 -39.48 -0.33 -2.56 16 22 C 0.08 1.15 6.62 -39.12 -0.26 0.89 16 23 O -0.30 -4.18 9.58 -34.56 -0.33 -4.51 16 24 C 0.08 0.78 2.84 -26.74 -0.08 0.70 16 25 C -0.18 -1.77 9.18 37.15 0.34 -1.43 16 26 C -0.15 -1.17 9.56 37.16 0.36 -0.81 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.13 1.50 6.30 -52.48 -0.33 1.17 16 31 H 0.40 5.07 6.63 -40.82 -0.27 4.80 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.24 8.07 -51.93 -0.42 0.82 16 34 H 0.05 0.61 6.44 -51.93 -0.33 0.28 16 35 H 0.03 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.15 2.74 6.28 -52.48 -0.33 2.41 16 39 H 0.14 1.67 5.44 -52.49 -0.29 1.39 16 40 H 0.07 0.69 6.27 -51.93 -0.33 0.37 16 41 H 0.07 0.75 6.97 -51.92 -0.36 0.39 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 376.96 15.07 5.68 5.68 Total: -1.00 -35.01 376.96 -7.59 -42.60 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.76 Total: 3.20 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -1.00 Total: 5.47 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.12 Total: -50.63 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.61 Total: -23.28 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.01 -7.59 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186257114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.226 kcal (2) G-P(sol) polarization free energy of solvation -35.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds