Wall clock time and date at job start Tue Mar 31 2020 15:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35991 * 117.00062 * 2 1 4 4 C 1.38502 * 120.04072 * 0.02562 * 3 2 1 5 5 C 1.38800 * 119.93588 * 179.97438 * 4 3 2 6 6 N 1.40144 * 119.99946 * 179.97438 * 5 4 3 7 7 C 1.34772 * 119.99850 * 216.08683 * 6 5 4 8 8 O 1.21587 * 120.00482 * 355.22038 * 7 6 5 9 9 N 1.34780 * 119.99516 * 175.22262 * 7 6 5 10 10 C 1.46502 * 120.00138 * 359.97438 * 9 7 6 11 11 C 1.46501 * 119.99699 * 180.02562 * 9 7 6 12 12 C 1.50698 * 109.47323 * 90.00199 * 11 9 7 13 13 H 1.07997 * 120.00149 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99991 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00163 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00004 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47136 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47108 * 119.99553 * 16 14 12 19 19 H 1.48492 * 109.47144 * 239.99605 * 16 14 12 20 20 C 1.38838 * 120.00590 * 0.02562 * 5 4 3 21 21 C 1.38195 * 120.07539 * 359.73926 * 20 5 4 22 22 C 1.38551 * 120.06660 * 0.50992 * 21 20 5 23 23 O 1.36069 * 120.00663 * 179.76583 * 22 21 20 24 24 C 1.42901 * 116.99511 * 5.28264 * 23 22 21 25 25 C 1.52988 * 109.47295 * 274.62515 * 24 23 22 26 26 C 1.53000 * 109.46759 * 154.62491 * 24 23 22 27 27 H 1.09004 * 109.46774 * 300.00308 * 1 2 3 28 28 H 1.09004 * 109.47229 * 59.99517 * 1 2 3 29 29 H 1.08997 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.08003 * 120.03274 * 359.96088 * 4 3 2 31 31 H 0.96997 * 119.99242 * 36.08755 * 6 5 4 32 32 H 1.09005 * 109.46468 * 90.00310 * 10 9 7 33 33 H 1.08994 * 109.47004 * 209.99674 * 10 9 7 34 34 H 1.08996 * 109.47081 * 330.00292 * 10 9 7 35 35 H 1.09004 * 109.47186 * 209.99876 * 11 9 7 36 36 H 1.09000 * 109.47045 * 329.99373 * 11 9 7 37 37 H 0.96995 * 120.00108 * 180.02562 * 15 14 12 38 38 H 1.08003 * 119.95793 * 179.97438 * 20 5 4 39 39 H 1.07994 * 119.96671 * 180.27510 * 21 20 5 40 40 H 1.08997 * 109.46951 * 34.63322 * 24 23 22 41 41 H 1.09008 * 109.47427 * 60.00424 * 25 24 23 42 42 H 1.08997 * 109.47779 * 300.00299 * 25 24 23 43 43 H 1.08996 * 109.47438 * 180.02562 * 25 24 23 44 44 H 1.08999 * 109.47353 * 179.97438 * 26 24 23 45 45 H 1.08994 * 109.47552 * 300.00405 * 26 24 23 46 46 H 1.09007 * 109.47095 * 60.00042 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2929 2.3738 0.0005 5 6 1.9253 3.6094 0.0011 6 7 1.1642 4.7861 0.0011 7 6 1.5905 5.8643 -0.6860 8 8 2.6757 5.8461 -1.2338 9 7 0.8136 6.9629 -0.7657 10 6 -0.4943 6.9846 -0.1060 11 6 1.2767 8.1347 -1.5130 12 6 0.8311 8.0236 -2.9483 13 1 0.2603 7.1657 -3.2717 14 6 1.1529 9.0168 -3.8489 15 7 1.8483 10.0613 -3.4554 16 14 0.6011 8.8787 -5.6282 17 1 -0.1607 7.6175 -5.8138 18 1 -0.2654 10.0356 -5.9690 19 1 1.7910 8.8729 -6.5165 20 6 3.3119 3.6796 0.0005 21 6 4.0641 2.5203 0.0049 22 6 3.4360 1.2853 -0.0008 23 8 4.1778 0.1446 -0.0013 24 6 5.5939 0.2918 0.1215 25 6 6.2031 0.5360 -1.2605 26 6 6.1888 -0.9831 0.7230 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.2142 2.3187 0.0003 31 1 0.3306 4.8244 0.4956 32 1 -0.3820 7.3607 0.9109 33 1 -1.1704 7.6347 -0.6612 34 1 -0.9033 5.9748 -0.0769 35 1 0.8555 9.0375 -1.0707 36 1 2.3649 8.1843 -1.4732 37 1 2.0744 10.7601 -4.0889 38 1 3.8032 4.6414 0.0005 39 1 5.1425 2.5770 0.0090 40 1 5.8163 1.1381 0.7713 41 1 5.7793 1.4443 -1.6891 42 1 5.9807 -0.3103 -1.9104 43 1 7.2832 0.6478 -1.1670 44 1 7.2690 -0.8711 0.8162 45 1 5.7548 -1.1571 1.7075 46 1 5.9664 -1.8295 0.0731 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186257114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:14 Heat of formation + Delta-G solvation = -87.465749 kcal Electronic energy + Delta-G solvation = -27418.629859 eV Core-core repulsion = 23502.035377 eV Total energy + Delta-G solvation = -3916.594482 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -41.95297 -41.04705 -39.67488 -38.25840 -36.58373 -35.51441 -34.59212 -33.83267 -31.31653 -30.31520 -29.35196 -28.25441 -27.84922 -27.24464 -25.18597 -24.17843 -23.31896 -21.76425 -21.01404 -19.79087 -19.08928 -18.69283 -18.61837 -17.36605 -17.20075 -16.86143 -16.58743 -16.40409 -16.12749 -15.81210 -15.76976 -15.53295 -14.84974 -14.62399 -14.33648 -14.18554 -13.97565 -13.75975 -13.57051 -13.46879 -13.39281 -13.13489 -13.09795 -12.87275 -12.77979 -12.57992 -12.52511 -12.29125 -12.19753 -12.10880 -11.87160 -11.69767 -11.58378 -11.09788 -10.69125 -10.64109 -9.66130 -9.43821 -8.50587 -8.21308 -6.36173 0.21010 0.38739 1.35963 1.38832 1.49760 1.67597 2.15954 2.26142 2.35082 2.39264 2.74934 3.04730 3.09141 3.77730 3.85345 3.98954 4.10854 4.16256 4.17721 4.24933 4.30136 4.41468 4.44754 4.51712 4.62623 4.66003 4.71299 4.78351 4.81935 4.84166 4.89450 4.92914 4.97948 5.20151 5.21830 5.26206 5.29229 5.35257 5.39949 5.55421 5.78449 5.81497 6.06277 6.07386 6.16104 6.63414 6.72685 7.05015 7.30855 7.62794 8.84966 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014624 B = 0.002975 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.249535 B = 9408.619576 C =10101.229067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.108 3.892 4 C -0.191 4.191 5 C 0.160 3.840 6 N -0.673 5.673 7 C 0.693 3.307 8 O -0.618 6.618 9 N -0.620 5.620 10 C 0.076 3.924 11 C 0.275 3.725 12 C -0.541 4.541 13 H 0.050 0.950 14 C 0.009 3.991 15 N -0.927 5.927 16 Si 0.966 3.034 17 H -0.269 1.269 18 H -0.267 1.267 19 H -0.283 1.283 20 C -0.135 4.135 21 C -0.152 4.152 22 C 0.074 3.926 23 O -0.315 6.315 24 C 0.065 3.935 25 C -0.179 4.179 26 C -0.141 4.141 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.165 0.835 31 H 0.420 0.580 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.001 0.999 37 H 0.267 0.733 38 H 0.119 0.881 39 H 0.151 0.849 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 -21.388 12.039 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.062 3.938 4 C -0.213 4.213 5 C 0.065 3.935 6 N -0.324 5.324 7 C 0.395 3.605 8 O -0.498 6.498 9 N -0.354 5.354 10 C -0.066 4.066 11 C 0.154 3.846 12 C -0.579 4.579 13 H 0.069 0.931 14 C -0.190 4.190 15 N -0.567 5.567 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.192 1.192 19 H -0.209 1.209 20 C -0.156 4.156 21 C -0.171 4.171 22 C 0.028 3.972 23 O -0.230 6.230 24 C 0.009 3.991 25 C -0.237 4.237 26 C -0.198 4.198 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.138 0.862 30 H 0.183 0.817 31 H 0.260 0.740 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.049 0.951 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.169 0.831 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.083 0.917 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.337 -21.525 11.565 24.438 hybrid contribution -0.484 0.945 -0.912 1.400 sum -0.820 -20.580 10.653 23.188 Atomic orbital electron populations 1.23380 0.76575 1.05646 1.02289 1.86151 1.23199 1.25179 1.89011 1.17999 0.89067 0.85204 1.01559 1.20832 1.01203 0.88935 1.10304 1.17307 0.90438 0.85008 1.00788 1.42507 1.26870 1.10002 1.53067 1.16081 0.84050 0.80797 0.79570 1.90854 1.23552 1.82353 1.53059 1.47358 1.19298 1.14279 1.54498 1.21919 0.83330 1.03589 0.97743 1.18718 0.94130 0.81816 0.89978 1.21730 1.34866 1.05747 0.95607 0.93146 1.25813 0.94984 0.94790 1.03437 1.70044 1.39440 1.10416 1.36817 0.85394 0.78088 0.78403 0.79063 1.19388 1.19241 1.20859 1.21028 0.93093 0.98873 1.02558 1.21059 1.01011 0.90032 1.05047 1.18280 0.88647 0.86259 1.03982 1.86186 1.20123 1.28154 1.88552 1.22720 0.77570 1.01053 0.97723 1.22383 1.02490 1.02166 0.96625 1.21845 1.01641 0.95286 1.01072 0.91121 0.92252 0.86172 0.81740 0.73992 0.90833 0.90772 0.89504 0.95108 0.98088 0.92373 0.86313 0.83135 0.90459 0.93509 0.91725 0.88837 0.88332 0.91794 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.32 -7.98 10.28 -79.49 -0.82 -8.80 16 3 C 0.11 2.99 6.70 22.55 0.15 3.14 16 4 C -0.19 -4.96 8.95 22.47 0.20 -4.76 16 5 C 0.16 5.11 6.28 38.09 0.24 5.35 16 6 N -0.67 -21.39 5.18 -317.10 -1.64 -23.03 16 7 C 0.69 30.04 8.12 179.05 1.45 31.50 16 8 O -0.62 -32.99 13.41 -3.99 -0.05 -33.04 16 9 N -0.62 -26.38 2.86 -869.31 -2.48 -28.86 16 10 C 0.08 2.18 10.16 127.77 1.30 3.48 16 11 C 0.28 14.83 5.16 85.63 0.44 15.27 16 12 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 14 C 0.01 0.51 5.46 84.65 0.46 0.97 16 15 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 16 Si 0.97 45.27 29.54 68.60 2.03 47.30 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 C -0.13 -4.68 8.69 22.40 0.19 -4.48 16 21 C -0.15 -4.50 8.26 22.33 0.18 -4.32 16 22 C 0.07 2.16 6.62 22.57 0.15 2.31 16 23 O -0.32 -8.47 9.58 -80.38 -0.77 -9.24 16 24 C 0.06 1.27 2.84 30.59 0.09 1.36 16 25 C -0.18 -3.35 9.18 71.98 0.66 -2.69 16 26 C -0.14 -2.00 9.56 71.98 0.69 -1.31 16 27 H 0.07 0.81 7.66 -2.38 -0.02 0.79 16 28 H 0.06 0.84 7.66 -2.38 -0.02 0.82 16 29 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.17 3.11 6.30 -2.91 -0.02 3.10 16 31 H 0.42 9.62 6.63 -92.71 -0.61 9.00 16 32 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 34 H 0.09 1.83 6.44 -2.39 -0.02 1.81 16 35 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 36 H 0.00 0.06 7.42 -2.39 -0.02 0.04 16 37 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.12 4.80 6.28 -2.91 -0.02 4.78 16 39 H 0.15 3.81 5.44 -2.91 -0.02 3.79 16 40 H 0.08 1.42 6.27 -2.39 -0.01 1.41 16 41 H 0.05 1.06 6.97 -2.38 -0.02 1.04 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 44 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -79.34 376.96 4.50 -74.84 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.39 Total: 20.51 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 7.57 Total: 16.07 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.84 Total: -107.65 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -1.64 Total: -51.07 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.34 4.50 -74.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186257114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.623 kcal (2) G-P(sol) polarization free energy of solvation -79.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.88 seconds