Wall clock time and date at job start Tue Mar 31 2020 15:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35970 * 117.00216 * 2 1 4 4 C 1.38722 * 119.97423 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.11649 * 179.74689 * 4 3 2 6 6 C 1.38512 * 120.06866 * 0.50505 * 5 4 3 7 7 O 1.36065 * 120.02327 * 179.74127 * 6 5 4 8 8 C 1.42897 * 117.00016 * 4.36099 * 7 6 5 9 9 C 1.53010 * 109.46835 * 203.91768 * 8 7 6 10 10 C 1.52997 * 109.47687 * 83.91645 * 8 7 6 11 11 C 1.39258 * 119.94921 * 359.47614 * 6 5 4 12 12 N 1.40155 * 120.06119 * 180.29633 * 11 6 5 13 13 C 1.34778 * 119.99978 * 214.38475 * 12 11 6 14 14 O 1.21586 * 119.99992 * 355.91988 * 13 12 11 15 15 N 1.34776 * 119.99749 * 175.92187 * 13 12 11 16 16 C 1.46503 * 119.99884 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47111 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47249 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99797 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00234 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00178 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47012 * 89.99751 * 22 20 18 24 24 H 1.48495 * 109.47667 * 210.00278 * 22 20 18 25 25 H 1.48509 * 109.47141 * 330.00291 * 22 20 18 26 26 C 1.38634 * 119.97797 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47085 * 59.99876 * 1 2 3 28 28 H 1.09001 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46981 * 300.00261 * 1 2 3 30 30 H 1.07994 * 119.93698 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.96112 * 180.27344 * 5 4 3 32 32 H 1.09001 * 109.47126 * 323.91036 * 8 7 6 33 33 H 1.09001 * 109.46666 * 299.99549 * 9 8 7 34 34 H 1.08999 * 109.47079 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.46809 * 59.99982 * 9 8 7 36 36 H 1.09000 * 109.47314 * 300.00110 * 10 8 7 37 37 H 1.09001 * 109.46880 * 59.99798 * 10 8 7 38 38 H 1.08999 * 109.47377 * 179.97438 * 10 8 7 39 39 H 0.96998 * 119.99897 * 34.38745 * 12 11 6 40 40 H 0.97001 * 120.00220 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.46914 * 300.00160 * 16 15 13 42 42 H 1.08999 * 109.47258 * 59.99446 * 16 15 13 43 43 H 1.08998 * 109.47684 * 300.00083 * 17 16 15 44 44 H 1.08997 * 109.47261 * 60.00341 * 17 16 15 45 45 H 0.97002 * 120.00332 * 180.02562 * 21 20 18 46 46 H 1.07996 * 120.03127 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3746 0.0005 5 6 1.9149 3.6078 0.0058 6 6 3.2978 3.6854 0.0000 7 8 3.9116 4.8998 -0.0001 8 6 3.0716 6.0512 0.1028 9 6 3.7923 7.2629 -0.4920 10 6 2.7521 6.3197 1.5747 11 6 4.0596 2.5196 -0.0001 12 7 5.4591 2.5954 0.0003 13 6 6.1842 1.6702 -0.6589 14 8 5.6288 0.7287 -1.1914 15 7 7.5250 1.7885 -0.7278 16 6 8.3132 0.7831 -1.4449 17 6 9.7964 1.1513 -1.3726 18 6 10.6073 0.1167 -2.1097 19 1 10.1140 -0.7195 -2.5828 20 6 11.9789 0.2377 -2.1801 21 7 12.5797 1.2557 -1.6036 22 14 12.9841 -1.0450 -3.0931 23 1 13.1244 -0.6432 -4.5158 24 1 14.3296 -1.1523 -2.4740 25 1 12.2973 -2.3594 -3.0154 26 6 3.4308 1.2834 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2120 2.3164 0.0005 31 1 1.3239 4.5117 0.0107 32 1 2.1452 5.8751 -0.4439 33 1 4.7187 7.4390 0.0547 34 1 3.1514 8.1411 -0.4140 35 1 4.0198 7.0716 -1.5406 36 1 2.2388 5.4566 1.9984 37 1 3.6785 6.4959 2.1213 38 1 2.1118 7.1983 1.6531 39 1 5.9057 3.3137 0.4751 40 1 7.9681 2.5398 -0.3033 41 1 8.1582 -0.1940 -0.9874 42 1 7.9978 0.7501 -2.4877 43 1 9.9511 2.1283 -1.8303 44 1 10.1122 1.1845 -0.3299 45 1 13.5447 1.3410 -1.6534 46 1 4.0191 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273194547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:41 Heat of formation + Delta-G solvation = -83.409084 kcal Electronic energy + Delta-G solvation = -26832.602611 eV Core-core repulsion = 22916.184039 eV Total energy + Delta-G solvation = -3916.418572 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96759 -39.56720 -39.26280 -36.85083 -34.94368 -34.28315 -33.24035 -32.82610 -30.60187 -29.63679 -28.40080 -27.66583 -27.11836 -24.81016 -23.81524 -22.26914 -21.24355 -20.88790 -20.46498 -18.88237 -18.05093 -17.89405 -16.54264 -16.41818 -16.08917 -15.84202 -15.58699 -15.13222 -14.91755 -14.65339 -14.46453 -14.36285 -13.90173 -13.56364 -13.51084 -13.18994 -12.92793 -12.75864 -12.65670 -12.57221 -12.27986 -12.23555 -12.12566 -11.51259 -11.38594 -11.17653 -11.05055 -10.94762 -10.61715 -10.57016 -10.33787 -10.13758 -9.83148 -9.54258 -9.24474 -8.61652 -8.41759 -8.23795 -7.60707 -6.07427 -4.10033 1.17812 1.38400 2.81145 2.97512 3.29638 3.31532 3.37594 3.39997 3.42528 3.79894 4.39602 4.43217 4.52426 4.58914 4.62705 4.78437 4.84091 4.90171 4.97166 5.04120 5.19508 5.27714 5.29813 5.33017 5.34256 5.41000 5.47164 5.72389 5.80589 5.82037 5.85144 6.04701 6.22566 6.31685 6.32248 6.40160 6.75452 6.78831 6.94800 7.16945 7.22736 7.43582 7.57503 7.64635 7.91591 8.24076 8.36182 8.87605 8.96592 9.54707 11.04270 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.002634 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.730772 B =10626.848184 C =12521.244119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.314 6.314 3 C 0.111 3.889 4 C -0.192 4.192 5 C -0.155 4.155 6 C 0.067 3.933 7 O -0.309 6.309 8 C 0.078 3.922 9 C -0.149 4.149 10 C -0.179 4.179 11 C 0.188 3.812 12 N -0.682 5.682 13 C 0.697 3.303 14 O -0.579 6.579 15 N -0.731 5.731 16 C 0.139 3.861 17 C 0.013 3.987 18 C -0.520 4.520 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.119 4.119 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.133 0.867 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.395 0.605 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.023 0.977 44 H 0.023 0.977 45 H 0.262 0.738 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.798 10.854 7.218 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.065 3.935 4 C -0.212 4.212 5 C -0.175 4.175 6 C 0.019 3.981 7 O -0.224 6.224 8 C 0.021 3.979 9 C -0.206 4.206 10 C -0.237 4.237 11 C 0.091 3.909 12 N -0.329 5.329 13 C 0.398 3.602 14 O -0.457 6.457 15 N -0.384 5.384 16 C 0.017 3.983 17 C -0.025 4.025 18 C -0.559 4.559 19 H 0.078 0.922 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.116 0.884 29 H 0.071 0.929 30 H 0.146 0.854 31 H 0.151 0.849 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.086 0.914 38 H 0.088 0.912 39 H 0.246 0.754 40 H 0.229 0.771 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -25.705 9.889 6.705 28.346 hybrid contribution 0.555 0.376 -0.048 0.672 sum -25.150 10.265 6.657 27.968 Atomic orbital electron populations 1.23014 0.78826 1.03751 1.01028 1.86116 1.20884 1.26644 1.89088 1.18664 0.91724 0.84152 0.98935 1.20922 0.99759 0.91563 1.08980 1.20741 0.92488 0.98266 1.05969 1.18559 0.90884 0.84399 1.04214 1.86121 1.35799 1.11583 1.88914 1.22398 0.94173 0.84696 0.96592 1.21846 1.01478 0.95390 1.01892 1.22362 1.02777 1.02401 0.96115 1.16426 0.81993 0.90284 1.02209 1.42505 1.03716 1.31539 1.55189 1.16057 0.82311 0.82462 0.79403 1.90899 1.70351 1.32823 1.51585 1.45553 1.04111 1.30202 1.58547 1.21661 0.92459 0.89368 0.94853 1.19330 0.87410 0.97749 0.97995 1.21049 0.91600 1.09123 1.34139 0.92178 1.24992 0.97940 0.95801 0.95567 1.69957 1.09683 1.29745 1.43980 0.86508 0.79348 0.81872 0.79806 1.20567 1.21194 1.19696 1.20422 0.91559 0.98043 1.03965 0.92848 0.88405 0.92897 0.85424 0.84899 0.91014 0.91343 0.90677 0.91551 0.91909 0.91379 0.91201 0.75439 0.77124 0.92493 0.92553 0.95911 0.95891 0.92864 0.82350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.03 10.50 -19.65 -0.21 -4.24 16 3 C 0.11 1.49 6.68 -39.26 -0.26 1.23 16 4 C -0.19 -2.07 9.03 -39.40 -0.36 -2.43 16 5 C -0.16 -1.63 8.43 -39.48 -0.33 -1.96 16 6 C 0.07 0.83 6.57 -39.10 -0.26 0.57 16 7 O -0.31 -3.51 9.36 -19.95 -0.19 -3.70 16 8 C 0.08 0.62 2.87 -26.73 -0.08 0.54 16 9 C -0.15 -1.02 9.56 37.16 0.36 -0.66 16 10 C -0.18 -1.19 9.31 37.16 0.35 -0.84 16 11 C 0.19 2.77 6.32 -83.51 -0.53 2.24 16 12 N -0.68 -10.05 5.20 -14.12 -0.07 -10.12 16 13 C 0.70 12.74 8.41 -86.92 -0.73 12.01 16 14 O -0.58 -12.55 13.75 5.29 0.07 -12.48 16 15 N -0.73 -13.20 5.56 -65.23 -0.36 -13.56 16 16 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 17 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 18 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 19 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.28 13.29 55.43 0.74 -25.54 16 22 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.12 -1.86 8.63 -39.27 -0.34 -2.20 16 27 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.13 1.01 6.28 -52.49 -0.33 0.68 16 31 H 0.13 1.03 5.74 -52.49 -0.30 0.73 16 32 H 0.07 0.51 5.90 -51.93 -0.31 0.20 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.45 7.50 -51.93 -0.39 0.06 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.41 4.96 8.57 -40.82 -0.35 4.61 16 40 H 0.40 6.13 8.49 -40.82 -0.35 5.78 16 41 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 46 H 0.16 2.85 6.18 -52.49 -0.32 2.53 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -33.55 380.86 -7.98 -41.53 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.91 Total: 6.24 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.77 Total: -0.40 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.30 Total: -49.22 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.32 Total: -20.41 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.55 -7.98 -41.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273194547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.880 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds