Wall clock time and date at job start Tue Mar 31 2020 15:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35970 * 117.00216 * 2 1 4 4 C 1.38722 * 119.97423 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.11649 * 179.74689 * 4 3 2 6 6 C 1.38512 * 120.06866 * 0.50505 * 5 4 3 7 7 O 1.36065 * 120.02327 * 179.74127 * 6 5 4 8 8 C 1.42897 * 117.00016 * 4.36099 * 7 6 5 9 9 C 1.53010 * 109.46835 * 203.91768 * 8 7 6 10 10 C 1.52997 * 109.47687 * 83.91645 * 8 7 6 11 11 C 1.39258 * 119.94921 * 359.47614 * 6 5 4 12 12 N 1.40155 * 120.06119 * 180.29633 * 11 6 5 13 13 C 1.34778 * 119.99978 * 214.38475 * 12 11 6 14 14 O 1.21586 * 119.99992 * 355.91988 * 13 12 11 15 15 N 1.34776 * 119.99749 * 175.92187 * 13 12 11 16 16 C 1.46503 * 119.99884 * 180.02562 * 15 13 12 17 17 C 1.52992 * 109.47111 * 179.97438 * 16 15 13 18 18 C 1.50703 * 109.47249 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99797 * 0.02562 * 18 17 16 20 20 C 1.37873 * 120.00234 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00178 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00171 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47012 * 89.99751 * 22 20 18 24 24 H 1.48495 * 109.47667 * 210.00278 * 22 20 18 25 25 H 1.48509 * 109.47141 * 330.00291 * 22 20 18 26 26 C 1.38634 * 119.97797 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47085 * 59.99876 * 1 2 3 28 28 H 1.09001 * 109.46970 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46981 * 300.00261 * 1 2 3 30 30 H 1.07994 * 119.93698 * 359.97438 * 4 3 2 31 31 H 1.07999 * 119.96112 * 180.27344 * 5 4 3 32 32 H 1.09001 * 109.47126 * 323.91036 * 8 7 6 33 33 H 1.09001 * 109.46666 * 299.99549 * 9 8 7 34 34 H 1.08999 * 109.47079 * 179.97438 * 9 8 7 35 35 H 1.08996 * 109.46809 * 59.99982 * 9 8 7 36 36 H 1.09000 * 109.47314 * 300.00110 * 10 8 7 37 37 H 1.09001 * 109.46880 * 59.99798 * 10 8 7 38 38 H 1.08999 * 109.47377 * 179.97438 * 10 8 7 39 39 H 0.96998 * 119.99897 * 34.38745 * 12 11 6 40 40 H 0.97001 * 120.00220 * 359.97438 * 15 13 12 41 41 H 1.08998 * 109.46914 * 300.00160 * 16 15 13 42 42 H 1.08999 * 109.47258 * 59.99446 * 16 15 13 43 43 H 1.08998 * 109.47684 * 300.00083 * 17 16 15 44 44 H 1.08997 * 109.47261 * 60.00341 * 17 16 15 45 45 H 0.97002 * 120.00332 * 180.02562 * 21 20 18 46 46 H 1.07996 * 120.03127 * 0.02562 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2903 2.3746 0.0005 5 6 1.9149 3.6078 0.0058 6 6 3.2978 3.6854 0.0000 7 8 3.9116 4.8998 -0.0001 8 6 3.0716 6.0512 0.1028 9 6 3.7923 7.2629 -0.4920 10 6 2.7521 6.3197 1.5747 11 6 4.0596 2.5196 -0.0001 12 7 5.4591 2.5954 0.0003 13 6 6.1842 1.6702 -0.6589 14 8 5.6288 0.7287 -1.1914 15 7 7.5250 1.7885 -0.7278 16 6 8.3132 0.7831 -1.4449 17 6 9.7964 1.1513 -1.3726 18 6 10.6073 0.1167 -2.1097 19 1 10.1140 -0.7195 -2.5828 20 6 11.9789 0.2377 -2.1801 21 7 12.5797 1.2557 -1.6036 22 14 12.9841 -1.0450 -3.0931 23 1 13.1244 -0.6432 -4.5158 24 1 14.3296 -1.1523 -2.4740 25 1 12.2973 -2.3594 -3.0154 26 6 3.4308 1.2834 -0.0005 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2120 2.3164 0.0005 31 1 1.3239 4.5117 0.0107 32 1 2.1452 5.8751 -0.4439 33 1 4.7187 7.4390 0.0547 34 1 3.1514 8.1411 -0.4140 35 1 4.0198 7.0716 -1.5406 36 1 2.2388 5.4566 1.9984 37 1 3.6785 6.4959 2.1213 38 1 2.1118 7.1983 1.6531 39 1 5.9057 3.3137 0.4751 40 1 7.9681 2.5398 -0.3033 41 1 8.1582 -0.1940 -0.9874 42 1 7.9978 0.7501 -2.4877 43 1 9.9511 2.1283 -1.8303 44 1 10.1122 1.1845 -0.3299 45 1 13.5447 1.3410 -1.6534 46 1 4.0191 0.3778 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273194547.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:40 Heat of formation + Delta-G solvation = -106.435635 kcal Electronic energy + Delta-G solvation = -26833.601118 eV Core-core repulsion = 22916.184039 eV Total energy + Delta-G solvation = -3917.417078 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02922 -40.83078 -40.09441 -37.88425 -36.59604 -35.54864 -34.81973 -33.90526 -31.93921 -31.04515 -29.54726 -28.22273 -27.78680 -26.71896 -24.78900 -23.49730 -22.68530 -22.12117 -21.62615 -19.96709 -19.34072 -18.72834 -18.43510 -17.50273 -17.29913 -16.76408 -16.56322 -16.49065 -16.29566 -15.84805 -15.68495 -15.45084 -15.15434 -15.11564 -14.54434 -14.31116 -14.24472 -13.72374 -13.52959 -13.37154 -13.22338 -13.12461 -12.95489 -12.91759 -12.74653 -12.52531 -12.30287 -12.19759 -12.14156 -11.73708 -11.66116 -11.52526 -11.38306 -11.12984 -11.02331 -10.60487 -10.12208 -9.42717 -8.56816 -8.23934 -6.34236 0.17842 0.42275 1.41660 1.42803 1.51627 1.56589 2.00565 2.19535 2.40091 2.47010 2.74082 3.10968 3.24419 3.74514 3.85070 3.99091 4.07081 4.11876 4.21526 4.33010 4.42353 4.45379 4.50381 4.51509 4.63785 4.69434 4.75272 4.77891 4.85502 4.88345 4.91673 5.01212 5.14210 5.19925 5.25869 5.32116 5.33044 5.37027 5.48814 5.58638 5.66372 5.77667 5.92345 6.16415 6.39562 6.57197 6.78656 6.95841 7.34925 7.44455 8.88117 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.002634 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.730772 B =10626.848184 C =12521.244119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.099 3.901 4 C -0.176 4.176 5 C -0.145 4.145 6 C 0.070 3.930 7 O -0.324 6.324 8 C 0.068 3.932 9 C -0.148 4.148 10 C -0.175 4.175 11 C 0.158 3.842 12 N -0.666 5.666 13 C 0.698 3.302 14 O -0.616 6.616 15 N -0.725 5.725 16 C 0.160 3.840 17 C 0.024 3.976 18 C -0.546 4.546 19 H 0.059 0.941 20 C 0.007 3.993 21 N -0.927 5.927 22 Si 0.965 3.035 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.147 4.147 27 H 0.066 0.934 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.165 0.835 31 H 0.169 0.831 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.422 0.578 40 H 0.409 0.591 41 H 0.047 0.953 42 H 0.046 0.954 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.266 0.734 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.112 12.280 7.294 31.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.054 3.946 4 C -0.195 4.195 5 C -0.164 4.164 6 C 0.023 3.977 7 O -0.239 6.239 8 C 0.012 3.988 9 C -0.205 4.205 10 C -0.232 4.232 11 C 0.062 3.938 12 N -0.315 5.315 13 C 0.399 3.601 14 O -0.496 6.496 15 N -0.379 5.379 16 C 0.036 3.964 17 C -0.013 4.013 18 C -0.585 4.585 19 H 0.077 0.923 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.168 4.168 27 H 0.085 0.915 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.182 0.818 31 H 0.186 0.814 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.112 0.888 39 H 0.260 0.740 40 H 0.244 0.756 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.075 0.925 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -28.053 11.366 6.813 31.025 hybrid contribution 1.126 0.012 -0.030 1.127 sum -26.926 11.377 6.783 30.008 Atomic orbital electron populations 1.23363 0.76217 1.05466 1.02550 1.86083 1.23686 1.26813 1.89114 1.18759 0.91149 0.85461 0.99264 1.21298 1.01368 0.90412 1.06461 1.21156 0.91765 0.99552 1.03934 1.18577 0.91502 0.84177 1.03479 1.86120 1.37179 1.11914 1.88734 1.22742 0.94458 0.83678 0.97875 1.21884 1.01759 0.95901 1.00952 1.22342 1.02825 1.03274 0.94793 1.16616 0.81606 0.91177 1.04426 1.42224 1.04053 1.30801 1.54388 1.16106 0.82095 0.82594 0.79347 1.90880 1.71008 1.34498 1.53209 1.45221 1.04164 1.30018 1.58541 1.21149 0.90945 0.89727 0.94566 1.19126 0.89106 0.96498 0.96591 1.21459 0.92528 1.09819 1.34679 0.92255 1.25867 0.99086 0.97884 0.96311 1.70058 1.10199 1.31369 1.45009 0.85439 0.77708 0.79232 0.78636 1.19735 1.20448 1.19084 1.20265 0.92860 0.97228 1.06458 0.91497 0.86878 0.90966 0.81808 0.81387 0.89553 0.92005 0.88115 0.92623 0.92255 0.92194 0.88833 0.74030 0.75581 0.93457 0.93604 0.97245 0.97172 0.92520 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.75 10.50 -93.21 -0.98 -9.73 16 3 C 0.10 2.65 6.68 22.48 0.15 2.80 16 4 C -0.18 -3.30 9.03 22.39 0.20 -3.10 16 5 C -0.15 -2.61 8.43 22.34 0.19 -2.42 16 6 C 0.07 1.66 6.57 22.58 0.15 1.81 16 7 O -0.32 -6.89 9.36 -94.29 -0.88 -7.78 16 8 C 0.07 0.90 2.87 30.60 0.09 0.99 16 9 C -0.15 -1.70 9.56 71.99 0.69 -1.01 16 10 C -0.18 -1.80 9.31 71.98 0.67 -1.13 16 11 C 0.16 4.76 6.32 38.16 0.24 5.00 16 12 N -0.67 -20.35 5.20 -316.85 -1.65 -21.99 16 13 C 0.70 26.67 8.41 179.05 1.51 28.18 16 14 O -0.62 -28.25 13.75 -3.99 -0.05 -28.30 16 15 N -0.73 -27.15 5.56 -478.55 -2.66 -29.81 16 16 C 0.16 7.20 5.61 86.38 0.48 7.69 16 17 C 0.02 1.26 5.09 29.85 0.15 1.41 16 18 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 20 C 0.01 0.41 5.46 84.65 0.46 0.87 16 21 N -0.93 -54.96 13.29 21.45 0.28 -54.68 16 22 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C -0.15 -4.83 8.63 22.47 0.19 -4.64 16 27 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 30 H 0.16 1.84 6.28 -2.91 -0.02 1.82 16 31 H 0.17 1.80 5.74 -2.91 -0.02 1.79 16 32 H 0.09 0.89 5.90 -2.39 -0.01 0.88 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.66 7.50 -2.39 -0.02 0.65 16 37 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.42 10.43 8.57 -92.71 -0.79 9.64 16 40 H 0.41 13.02 8.49 -92.71 -0.79 12.24 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 45 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 46 H 0.12 4.86 6.18 -2.91 -0.02 4.84 16 Total: -1.00 -75.07 380.86 2.04 -73.03 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: -0.57 Total: 26.02 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.52 Total: 6.94 kcal Atomic # 7 Polarization: -102.46 SS G_CDS: -4.02 Total: -106.48 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.92 Total: -45.80 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -75.07 2.04 -73.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273194547.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.407 kcal (2) G-P(sol) polarization free energy of solvation -75.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds