Wall clock time and date at job start Tue Mar 31 2020 15:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 O 1.42900 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99920 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46925 * 179.97438 * 5 4 3 7 7 O 1.45198 * 109.47263 * 64.99908 * 6 5 4 8 8 C 1.34668 * 117.00055 * 179.97438 * 7 6 5 9 9 O 1.21430 * 120.00449 * 0.02562 * 8 7 6 10 10 C 1.48065 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.40059 * 120.88485 * 359.97438 * 10 8 7 12 12 C 1.37943 * 119.17018 * 180.02562 * 11 10 8 13 13 N 1.31918 * 121.00685 * 359.74611 * 12 11 10 14 14 C 1.32317 * 121.95743 * 0.52672 * 13 12 11 15 15 N 1.39020 * 119.64558 * 179.75068 * 14 13 12 16 16 C 1.46500 * 120.00231 * 179.72403 * 15 14 13 17 17 C 1.53006 * 109.46998 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46866 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47574 * 89.99780 * 22 20 18 24 24 H 1.48500 * 109.47346 * 209.99892 * 22 20 18 25 25 H 1.48499 * 109.47067 * 329.99541 * 22 20 18 26 26 C 1.39125 * 120.71261 * 359.47180 * 14 13 12 27 27 H 1.08995 * 109.46929 * 60.00566 * 1 2 3 28 28 H 1.09002 * 109.46520 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47062 * 299.99708 * 1 2 3 30 30 H 1.08991 * 109.46953 * 239.99707 * 2 1 3 31 31 H 1.09003 * 109.46749 * 119.99747 * 2 1 3 32 32 H 1.08998 * 109.47264 * 59.99630 * 3 2 1 33 33 H 1.09004 * 109.47009 * 300.00071 * 3 2 1 34 34 H 1.09003 * 109.46996 * 59.99731 * 5 4 3 35 35 H 1.08995 * 109.47167 * 299.99505 * 5 4 3 36 36 H 1.09005 * 109.47281 * 305.00107 * 6 5 4 37 37 H 1.09001 * 109.47063 * 184.99969 * 6 5 4 38 38 H 1.07996 * 120.41741 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.49981 * 179.97438 * 12 11 10 40 40 H 0.97010 * 119.99859 * 359.72772 * 15 14 13 41 41 H 1.09000 * 109.47175 * 60.00117 * 16 15 14 42 42 H 1.09001 * 109.47297 * 299.99624 * 16 15 14 43 43 H 1.08993 * 109.46955 * 300.00226 * 17 16 15 44 44 H 1.09000 * 109.47050 * 60.00054 * 17 16 15 45 45 H 0.96992 * 120.00032 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.53934 * 180.27870 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5754 2.6272 -0.0012 7 8 6.0122 2.0116 -1.2416 8 6 7.3373 1.8323 -1.4016 9 8 8.1069 2.1800 -0.5291 10 6 7.8558 1.2101 -2.6411 11 6 6.9849 0.8007 -3.6587 12 6 7.5062 0.2244 -4.7985 13 7 8.8071 0.0600 -4.9427 14 6 9.6674 0.4263 -4.0065 15 7 11.0284 0.2257 -4.2068 16 6 11.9883 0.6339 -3.1781 17 6 13.4074 0.3030 -3.6446 18 6 14.3947 0.7223 -2.5861 19 1 14.0449 1.1795 -1.6722 20 6 15.7444 0.5233 -2.7846 21 7 16.1704 -0.0331 -3.8977 22 14 16.9682 1.0424 -1.4723 23 1 17.1932 -0.0845 -0.5317 24 1 18.2542 1.4155 -2.1144 25 1 16.4301 2.2089 -0.7274 26 6 9.2251 1.0154 -2.8263 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.7289 3.2892 0.8887 35 1 3.7283 3.2886 -0.8912 36 1 5.8911 2.0113 0.8409 37 1 6.0184 3.6191 0.0879 38 1 5.9184 0.9337 -3.5521 39 1 6.8395 -0.0936 -5.5863 40 1 11.3426 -0.1845 -5.0279 41 1 11.7770 0.0999 -2.2516 42 1 11.9028 1.7070 -3.0066 43 1 13.4926 -0.7700 -3.8157 44 1 13.6190 0.8366 -4.5712 45 1 17.1199 -0.1734 -4.0372 46 1 9.9301 1.3175 -2.0660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273288285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:30 Heat of formation + Delta-G solvation = -108.907452 kcal Electronic energy + Delta-G solvation = -25650.311621 eV Core-core repulsion = 21732.787357 eV Total energy + Delta-G solvation = -3917.524264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.79618 -39.70425 -38.51562 -36.58921 -35.96199 -34.19889 -33.20565 -32.62101 -30.67429 -30.55633 -28.38130 -26.44959 -25.35972 -24.78056 -23.02879 -22.58625 -21.87419 -21.16938 -20.72186 -18.36233 -17.55515 -17.37588 -16.69737 -16.42931 -16.29724 -16.18650 -15.57170 -15.35981 -14.83453 -14.66082 -14.58848 -14.51886 -13.97965 -13.72011 -13.62313 -13.42969 -13.19573 -13.00371 -12.52250 -12.42423 -12.29329 -11.90814 -11.69989 -11.36988 -11.30826 -11.18751 -11.17031 -10.87241 -10.79396 -10.68659 -10.64518 -10.05319 -9.96341 -9.69067 -9.55551 -9.39309 -9.33214 -8.45755 -7.40332 -6.11087 -4.14808 0.69009 1.45590 2.34945 2.60322 3.14513 3.28469 3.34606 3.37726 3.56026 4.02844 4.33543 4.40164 4.45695 4.51482 4.61492 4.70644 4.74270 4.82451 4.91941 4.96709 5.03387 5.12477 5.15849 5.18546 5.23925 5.25964 5.29436 5.40408 5.55876 5.68766 5.75338 5.78098 5.85698 6.09414 6.17935 6.18906 6.20648 6.58884 6.63531 6.74492 7.21440 7.51943 7.57503 7.60674 7.86345 7.94437 8.21687 8.38485 8.90852 9.50265 11.00405 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.001962 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.946625 B =14264.978680 C =15276.151846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.061 3.939 4 O -0.382 6.382 5 C 0.065 3.935 6 C 0.068 3.932 7 O -0.341 6.341 8 C 0.512 3.488 9 O -0.497 6.497 10 C -0.037 4.037 11 C -0.201 4.201 12 C 0.145 3.855 13 N -0.533 5.533 14 C 0.407 3.593 15 N -0.709 5.709 16 C 0.123 3.877 17 C 0.014 3.986 18 C -0.524 4.524 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.892 5.892 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.177 4.177 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.406 0.594 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.025 0.975 44 H 0.025 0.975 45 H 0.263 0.737 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.929 3.880 5.074 31.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.016 4.016 4 O -0.302 6.302 5 C -0.012 4.012 6 C -0.006 4.006 7 O -0.258 6.258 8 C 0.356 3.644 9 O -0.384 6.384 10 C -0.046 4.046 11 C -0.225 4.225 12 C -0.013 4.013 13 N -0.252 5.252 14 C 0.169 3.831 15 N -0.338 5.338 16 C 0.000 4.000 17 C -0.024 4.024 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.204 4.204 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.242 0.758 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.043 0.957 44 H 0.043 0.957 45 H 0.072 0.928 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -29.945 3.480 4.703 30.511 hybrid contribution 0.421 0.810 1.281 1.573 sum -29.525 4.290 5.984 30.429 Atomic orbital electron populations 1.21699 0.94743 1.02342 1.01943 1.21466 0.95645 0.95535 1.03611 1.22570 0.80783 0.98098 1.00101 1.87970 1.19716 1.27031 1.95439 1.22549 0.91248 0.85831 1.01566 1.23118 0.93216 0.98994 0.85229 1.86578 1.24701 1.73677 1.40823 1.21211 0.80503 0.75932 0.86767 1.90856 1.57945 1.46894 1.42715 1.19049 0.93508 0.99867 0.92208 1.21950 1.00768 1.04721 0.95061 1.22351 0.90133 0.93081 0.95780 1.67102 1.03837 1.23002 1.31244 1.18376 0.86555 0.89701 0.88512 1.45170 1.00977 1.64682 1.22939 1.21899 0.89995 0.98652 0.89438 1.19294 0.87664 0.97811 0.97602 1.21016 0.91108 1.40920 1.03241 0.92208 1.24995 0.98558 0.94990 0.95686 1.69959 1.15037 1.43116 1.24924 0.86504 0.80453 0.79020 0.81529 1.20540 1.21142 1.19729 1.21566 0.94783 1.04681 0.99342 0.92495 0.91947 0.92616 0.90877 0.91121 0.93426 0.93203 0.90894 0.91885 0.90040 0.89328 0.84135 0.82362 0.75772 0.92605 0.92615 0.95704 0.95704 0.92783 0.83466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.77 6.30 -26.73 -0.17 -0.94 16 3 C 0.06 0.40 5.94 37.16 0.22 0.62 16 4 O -0.38 -3.54 10.31 -38.80 -0.40 -3.94 16 5 C 0.06 0.46 6.33 37.16 0.24 0.70 16 6 C 0.07 0.64 5.85 37.16 0.22 0.85 16 7 O -0.34 -4.13 9.54 -43.19 -0.41 -4.55 16 8 C 0.51 7.42 7.92 34.76 0.28 7.70 16 9 O -0.50 -8.37 16.23 -19.21 -0.31 -8.68 16 10 C -0.04 -0.55 5.90 -104.70 -0.62 -1.17 16 11 C -0.20 -2.48 9.70 -39.01 -0.38 -2.85 16 12 C 0.14 1.81 11.16 -17.62 -0.20 1.62 16 13 N -0.53 -8.42 10.36 -12.48 -0.13 -8.55 16 14 C 0.41 6.95 7.65 -155.08 -1.19 5.77 16 15 N -0.71 -12.84 5.73 -60.43 -0.35 -13.19 16 16 C 0.12 2.48 4.83 -4.04 -0.02 2.47 16 17 C 0.01 0.34 5.09 -27.88 -0.14 0.20 16 18 C -0.52 -14.37 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 22 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.18 -2.93 8.89 -38.77 -0.34 -3.27 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.14 1.40 7.71 -52.49 -0.40 0.99 16 39 H 0.16 1.40 8.06 -52.49 -0.42 0.97 16 40 H 0.41 7.18 8.60 -40.82 -0.35 6.83 16 41 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 42 H 0.06 1.12 7.93 -51.93 -0.41 0.70 16 43 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.15 2.54 6.39 -52.49 -0.34 2.20 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -31.99 394.86 -9.45 -41.44 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.37 Total: 2.31 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: -2.15 Total: -1.72 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: 0.26 Total: -47.12 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -1.12 Total: -17.17 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.99 -9.45 -41.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273288285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.466 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds