Wall clock time and date at job start Tue Mar 31 2020 15:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47123 * 2 1 4 4 O 1.42900 * 109.47270 * 180.02562 * 3 2 1 5 5 C 1.42901 * 113.99920 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.46925 * 179.97438 * 5 4 3 7 7 O 1.45198 * 109.47263 * 64.99908 * 6 5 4 8 8 C 1.34668 * 117.00055 * 179.97438 * 7 6 5 9 9 O 1.21430 * 120.00449 * 0.02562 * 8 7 6 10 10 C 1.48065 * 120.00069 * 179.97438 * 8 7 6 11 11 C 1.40059 * 120.88485 * 359.97438 * 10 8 7 12 12 C 1.37943 * 119.17018 * 180.02562 * 11 10 8 13 13 N 1.31918 * 121.00685 * 359.74611 * 12 11 10 14 14 C 1.32317 * 121.95743 * 0.52672 * 13 12 11 15 15 N 1.39020 * 119.64558 * 179.75068 * 14 13 12 16 16 C 1.46500 * 120.00231 * 179.72403 * 15 14 13 17 17 C 1.53006 * 109.46998 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46866 * 180.02562 * 17 16 15 19 19 H 1.08003 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00270 * 180.02562 * 18 17 16 21 21 N 1.31522 * 119.99834 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00496 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47574 * 89.99780 * 22 20 18 24 24 H 1.48500 * 109.47346 * 209.99892 * 22 20 18 25 25 H 1.48499 * 109.47067 * 329.99541 * 22 20 18 26 26 C 1.39125 * 120.71261 * 359.47180 * 14 13 12 27 27 H 1.08995 * 109.46929 * 60.00566 * 1 2 3 28 28 H 1.09002 * 109.46520 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47062 * 299.99708 * 1 2 3 30 30 H 1.08991 * 109.46953 * 239.99707 * 2 1 3 31 31 H 1.09003 * 109.46749 * 119.99747 * 2 1 3 32 32 H 1.08998 * 109.47264 * 59.99630 * 3 2 1 33 33 H 1.09004 * 109.47009 * 300.00071 * 3 2 1 34 34 H 1.09003 * 109.46996 * 59.99731 * 5 4 3 35 35 H 1.08995 * 109.47167 * 299.99505 * 5 4 3 36 36 H 1.09005 * 109.47281 * 305.00107 * 6 5 4 37 37 H 1.09001 * 109.47063 * 184.99969 * 6 5 4 38 38 H 1.07996 * 120.41741 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.49981 * 179.97438 * 12 11 10 40 40 H 0.97010 * 119.99859 * 359.72772 * 15 14 13 41 41 H 1.09000 * 109.47175 * 60.00117 * 16 15 14 42 42 H 1.09001 * 109.47297 * 299.99624 * 16 15 14 43 43 H 1.08993 * 109.46955 * 300.00226 * 17 16 15 44 44 H 1.09000 * 109.47050 * 60.00054 * 17 16 15 45 45 H 0.96992 * 120.00032 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.53934 * 180.27870 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4691 1.4425 -0.0006 5 6 4.0502 2.7480 -0.0012 6 6 5.5754 2.6272 -0.0012 7 8 6.0122 2.0116 -1.2416 8 6 7.3373 1.8323 -1.4016 9 8 8.1069 2.1800 -0.5291 10 6 7.8558 1.2101 -2.6411 11 6 6.9849 0.8007 -3.6587 12 6 7.5062 0.2244 -4.7985 13 7 8.8071 0.0600 -4.9427 14 6 9.6674 0.4263 -4.0065 15 7 11.0284 0.2257 -4.2068 16 6 11.9883 0.6339 -3.1781 17 6 13.4074 0.3030 -3.6446 18 6 14.3947 0.7223 -2.5861 19 1 14.0449 1.1795 -1.6722 20 6 15.7444 0.5233 -2.7846 21 7 16.1704 -0.0331 -3.8977 22 14 16.9682 1.0424 -1.4723 23 1 17.1932 -0.0845 -0.5317 24 1 18.2542 1.4155 -2.1144 25 1 16.4301 2.2089 -0.7274 26 6 9.2251 1.0154 -2.8263 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.7289 3.2892 0.8887 35 1 3.7283 3.2886 -0.8912 36 1 5.8911 2.0113 0.8409 37 1 6.0184 3.6191 0.0879 38 1 5.9184 0.9337 -3.5521 39 1 6.8395 -0.0936 -5.5863 40 1 11.3426 -0.1845 -5.0279 41 1 11.7770 0.0999 -2.2516 42 1 11.9028 1.7070 -3.0066 43 1 13.4926 -0.7700 -3.8157 44 1 13.6190 0.8366 -4.5712 45 1 17.1199 -0.1734 -4.0372 46 1 9.9301 1.3175 -2.0660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273288285.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:27 Heat of formation + Delta-G solvation = -127.636336 kcal Electronic energy + Delta-G solvation = -25651.123766 eV Core-core repulsion = 21732.787357 eV Total energy + Delta-G solvation = -3918.336409 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 6.21 seconds Orbital eigenvalues (eV) -41.90623 -40.83724 -39.13766 -37.60728 -37.45855 -35.13410 -34.67165 -33.84971 -32.24336 -31.30652 -29.89882 -27.01253 -26.67309 -26.27520 -24.08486 -23.69320 -22.52272 -22.32287 -22.13214 -19.54688 -18.68474 -18.38122 -18.09944 -17.70973 -17.08026 -17.01443 -16.65971 -16.53363 -16.45106 -16.10413 -15.60108 -15.31033 -15.18071 -14.97031 -14.86670 -14.32968 -14.26385 -14.14822 -13.62737 -13.31711 -13.03242 -13.01174 -12.90244 -12.80118 -12.51976 -12.43757 -12.38029 -11.93713 -11.92452 -11.74258 -11.64916 -11.62614 -11.40914 -11.28917 -10.88300 -10.60298 -10.58289 -10.55907 -8.71774 -8.25214 -6.36390 -0.47080 0.31831 1.36377 1.41034 1.41677 1.46411 1.53047 2.17075 2.43243 2.62588 2.86892 3.09723 3.41062 3.67040 3.83402 3.92027 4.03833 4.04351 4.07914 4.15670 4.23788 4.31365 4.42131 4.44542 4.45153 4.48682 4.53682 4.66113 4.68052 4.69509 4.79338 4.82501 4.88622 5.10194 5.16679 5.19152 5.26492 5.33112 5.38298 5.52795 5.54729 5.70462 5.93473 6.14394 6.24125 6.52719 6.61027 6.78055 7.11262 7.33275 8.86949 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018966 B = 0.001962 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.946625 B =14264.978680 C =15276.151846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C 0.058 3.942 4 O -0.412 6.412 5 C 0.067 3.933 6 C 0.059 3.941 7 O -0.336 6.336 8 C 0.516 3.484 9 O -0.528 6.528 10 C -0.046 4.046 11 C -0.176 4.176 12 C 0.149 3.851 13 N -0.544 5.544 14 C 0.391 3.609 15 N -0.718 5.718 16 C 0.147 3.853 17 C 0.021 3.979 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.005 3.995 21 N -0.928 5.928 22 Si 0.967 3.033 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.264 1.264 26 C -0.199 4.199 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.101 0.899 38 H 0.173 0.827 39 H 0.204 0.796 40 H 0.406 0.594 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.004 0.996 44 H 0.004 0.996 45 H 0.265 0.735 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.654 4.665 5.526 34.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.018 4.018 4 O -0.332 6.332 5 C -0.009 4.009 6 C -0.014 4.014 7 O -0.252 6.252 8 C 0.361 3.639 9 O -0.418 6.418 10 C -0.055 4.055 11 C -0.199 4.199 12 C -0.009 4.009 13 N -0.263 5.263 14 C 0.155 3.845 15 N -0.348 5.348 16 C 0.024 3.976 17 C -0.016 4.016 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.791 3.209 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.188 1.188 26 C -0.225 4.225 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.191 0.809 39 H 0.221 0.779 40 H 0.241 0.759 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.074 0.926 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -32.730 4.269 5.154 33.407 hybrid contribution 1.031 0.559 1.110 1.615 sum -31.698 4.828 6.265 32.670 Atomic orbital electron populations 1.21676 0.93371 1.02728 1.02577 1.21487 0.96831 0.95451 1.02647 1.22711 0.79546 0.98335 1.01248 1.87928 1.21252 1.28296 1.95712 1.22661 0.89264 0.85476 1.03496 1.23459 0.95045 0.99183 0.83703 1.86564 1.22987 1.73483 1.42196 1.21204 0.81110 0.75295 0.86268 1.90840 1.58879 1.48350 1.43741 1.19213 0.93162 1.00039 0.93099 1.22343 1.01944 1.01942 0.93623 1.23145 0.89307 0.91643 0.96820 1.67139 1.05180 1.22991 1.31004 1.18360 0.86076 0.90844 0.89241 1.44857 1.01491 1.65983 1.22475 1.21380 0.88100 0.98472 0.89689 1.19110 0.90176 0.95992 0.96330 1.21463 0.92097 1.40851 1.03949 0.91766 1.25914 1.00628 0.94914 0.97901 1.70081 1.15567 1.44236 1.26860 0.85414 0.77817 0.78921 0.78710 1.19794 1.20636 1.18826 1.21452 0.95669 1.06235 0.99126 0.91892 0.91740 0.91919 0.91923 0.92038 0.92037 0.92189 0.88146 0.90616 0.90997 0.88078 0.80920 0.77901 0.75855 0.92788 0.92707 0.97781 0.97725 0.92595 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 71.98 0.71 -0.32 16 2 C -0.13 -1.39 6.30 30.60 0.19 -1.20 16 3 C 0.06 0.62 5.94 71.98 0.43 1.05 16 4 O -0.41 -6.83 10.31 -145.56 -1.50 -8.33 16 5 C 0.07 0.79 6.33 71.98 0.46 1.24 16 6 C 0.06 1.02 5.85 71.98 0.42 1.44 16 7 O -0.34 -7.58 9.54 -53.11 -0.51 -8.08 16 8 C 0.52 14.62 7.92 70.43 0.56 15.18 16 9 O -0.53 -18.01 16.23 20.06 0.33 -17.68 16 10 C -0.05 -1.30 5.90 -19.91 -0.12 -1.42 16 11 C -0.18 -3.78 9.70 22.64 0.22 -3.57 16 12 C 0.15 3.26 11.16 84.61 0.94 4.20 16 13 N -0.54 -16.48 10.36 -193.41 -2.00 -18.48 16 14 C 0.39 13.43 7.65 133.08 1.02 14.45 16 15 N -0.72 -26.93 5.73 -345.12 -1.98 -28.90 16 16 C 0.15 6.22 4.83 86.38 0.42 6.63 16 17 C 0.02 1.11 5.09 29.85 0.15 1.26 16 18 C -0.55 -30.59 9.11 25.60 0.23 -30.35 16 19 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.01 0.29 5.46 84.65 0.46 0.75 16 21 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 22 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 26 C -0.20 -6.65 8.89 22.80 0.20 -6.45 16 27 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 37 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.17 2.64 7.71 -2.91 -0.02 2.62 16 39 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.41 14.96 8.60 -92.70 -0.80 14.17 16 41 H 0.05 2.27 7.93 -2.39 -0.02 2.25 16 42 H 0.05 2.29 7.93 -2.39 -0.02 2.27 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 45 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.13 4.73 6.39 -2.91 -0.02 4.71 16 Total: -1.00 -70.60 394.86 3.12 -67.47 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.18 Total: 20.29 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 6.30 Total: 2.90 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.70 Total: -102.63 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.68 Total: -34.10 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.60 3.12 -67.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273288285.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.164 kcal (2) G-P(sol) polarization free energy of solvation -70.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.21 seconds