Wall clock time and date at job start Tue Mar 31 2020 15:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35988 * 117.00105 * 2 1 4 4 C 1.38509 * 120.03793 * 0.02562 * 3 2 1 5 5 C 1.38798 * 119.93501 * 179.97438 * 4 3 2 6 6 N 1.40138 * 120.00023 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00292 * 215.21152 * 6 5 4 8 8 O 1.21592 * 119.99792 * 355.79906 * 7 6 5 9 9 N 1.34774 * 119.99979 * 175.80070 * 7 6 5 10 10 C 1.46501 * 120.00060 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47474 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00280 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00195 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99753 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47511 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47054 * 120.00452 * 16 14 12 19 19 H 1.48503 * 109.47242 * 240.00125 * 16 14 12 20 20 C 1.38838 * 120.00800 * 0.02562 * 5 4 3 21 21 C 1.38200 * 120.06961 * 359.67723 * 20 5 4 22 22 C 1.38549 * 120.06739 * 0.59973 * 21 20 5 23 23 O 1.36069 * 119.99739 * 179.70118 * 22 21 20 24 24 C 1.42891 * 117.00555 * 4.43609 * 23 22 21 25 25 C 1.52999 * 109.47370 * 204.07082 * 24 23 22 26 26 C 1.53002 * 109.47100 * 84.07120 * 24 23 22 27 27 H 1.08996 * 109.47425 * 299.99725 * 1 2 3 28 28 H 1.09000 * 109.47096 * 60.00351 * 1 2 3 29 29 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.03352 * 359.95035 * 4 3 2 31 31 H 0.97002 * 119.99914 * 35.20325 * 6 5 4 32 32 H 0.97001 * 120.00421 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.47307 * 300.00480 * 10 9 7 34 34 H 1.09005 * 109.46974 * 59.99961 * 10 9 7 35 35 H 1.09001 * 109.47573 * 299.99993 * 11 10 9 36 36 H 1.09001 * 109.47436 * 60.00501 * 11 10 9 37 37 H 0.96996 * 119.99867 * 180.02562 * 15 14 12 38 38 H 1.07996 * 119.96206 * 180.02562 * 20 5 4 39 39 H 1.07999 * 119.96278 * 180.32342 * 21 20 5 40 40 H 1.08999 * 109.47177 * 324.07174 * 24 23 22 41 41 H 1.08999 * 109.47046 * 300.00173 * 25 24 23 42 42 H 1.08998 * 109.47386 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47326 * 59.99988 * 25 24 23 44 44 H 1.08999 * 109.47060 * 59.99983 * 26 24 23 45 45 H 1.09001 * 109.47155 * 180.02562 * 26 24 23 46 46 H 1.09005 * 109.46769 * 299.99777 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3738 0.0005 5 6 1.9252 3.6093 0.0011 6 7 1.1640 4.7860 0.0011 7 6 1.5990 5.8700 -0.6715 8 8 2.6868 5.8525 -1.2144 9 7 0.8281 6.9733 -0.7422 10 6 1.3011 8.1517 -1.4728 11 6 0.2446 9.2558 -1.3987 12 6 0.7308 10.4678 -2.1507 13 1 1.6971 10.4524 -2.6330 14 6 -0.0578 11.5964 -2.2232 15 7 -1.2342 11.6155 -1.6355 16 14 0.5454 13.0990 -3.1548 17 1 1.8906 12.8238 -3.7204 18 1 -0.4001 13.4107 -4.2567 19 1 0.6249 14.2569 -2.2284 20 6 3.3118 3.6797 0.0005 21 6 4.0639 2.5203 0.0062 22 6 3.4359 1.2854 -0.0001 23 8 4.1779 0.1448 -0.0007 24 6 5.5952 0.2927 0.1039 25 6 6.2819 -0.9364 -0.4948 26 6 5.9865 0.4287 1.5768 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2142 2.3186 0.0001 31 1 0.3241 4.8203 0.4850 32 1 -0.0398 6.9871 -0.3094 33 1 2.2298 8.5074 -1.0264 34 1 1.4774 7.8864 -2.5152 35 1 -0.6843 8.9004 -1.8448 36 1 0.0688 9.5211 -0.3562 37 1 -1.7891 12.4094 -1.6868 38 1 3.8030 4.6414 0.0014 39 1 5.1424 2.5771 0.0111 40 1 5.9085 1.1845 -0.4390 41 1 5.9687 -1.8281 0.0481 42 1 7.3631 -0.8238 -0.4146 43 1 6.0032 -1.0333 -1.5441 44 1 5.6732 -0.4630 2.1197 45 1 7.0677 0.5420 1.6566 46 1 5.4973 1.3044 2.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343795872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:25 Heat of formation + Delta-G solvation = -83.505409 kcal Electronic energy + Delta-G solvation = -26468.165574 eV Core-core repulsion = 22551.742825 eV Total energy + Delta-G solvation = -3916.422749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94356 -39.87138 -38.85256 -37.20940 -34.95124 -34.31949 -33.19537 -32.77960 -30.38978 -29.88394 -28.69428 -27.62277 -27.02305 -24.82180 -23.42442 -22.76554 -21.12020 -20.87350 -20.63660 -18.85948 -18.30019 -17.76111 -16.51279 -16.37579 -16.09514 -15.95185 -15.42236 -15.28194 -14.89893 -14.77691 -14.55760 -14.52763 -13.78571 -13.62846 -13.59656 -13.28427 -12.93927 -12.70139 -12.59207 -12.46693 -12.32066 -12.18281 -11.86970 -11.53986 -11.38843 -11.22826 -11.16561 -11.05343 -10.81389 -10.64444 -10.38878 -10.02223 -9.68828 -9.59259 -9.28450 -8.72221 -8.57625 -8.39661 -7.51789 -6.12386 -4.15110 1.15839 1.38995 2.78990 3.06162 3.13430 3.26723 3.32122 3.34565 3.39837 3.75239 4.34395 4.48881 4.50347 4.60983 4.67140 4.81768 4.84307 4.96249 5.01208 5.15923 5.22407 5.24150 5.25011 5.28263 5.36910 5.42863 5.47996 5.50670 5.70284 5.81135 5.87315 6.12840 6.27786 6.31747 6.33680 6.38379 6.70409 6.82411 6.86565 6.94806 7.10954 7.49740 7.51562 7.58017 7.86427 8.16584 8.28944 8.78731 8.91398 9.49954 10.99276 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.002087 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.093383 B =13415.592361 C =14368.965823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.114 3.886 4 C -0.203 4.203 5 C 0.176 3.824 6 N -0.691 5.691 7 C 0.697 3.303 8 O -0.579 6.579 9 N -0.732 5.732 10 C 0.139 3.861 11 C 0.012 3.988 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.113 4.113 21 C -0.156 4.156 22 C 0.082 3.918 23 O -0.302 6.302 24 C 0.073 3.927 25 C -0.147 4.147 26 C -0.179 4.179 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.405 0.595 32 H 0.395 0.605 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 38 H 0.148 0.852 39 H 0.138 0.862 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.070 0.930 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.138 -25.616 7.332 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.068 3.932 4 C -0.225 4.225 5 C 0.081 3.919 6 N -0.339 5.339 7 C 0.398 3.602 8 O -0.457 6.457 9 N -0.385 5.385 10 C 0.016 3.984 11 C -0.025 4.025 12 C -0.559 4.559 13 H 0.079 0.921 14 C -0.144 4.144 15 N -0.533 5.533 16 Si 0.725 3.275 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 C -0.134 4.134 21 C -0.175 4.175 22 C 0.036 3.964 23 O -0.216 6.216 24 C 0.017 3.983 25 C -0.204 4.204 26 C -0.236 4.236 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.154 0.846 31 H 0.240 0.760 32 H 0.228 0.772 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.165 0.835 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.981 -25.791 6.801 27.841 hybrid contribution -0.869 1.299 -0.026 1.564 sum 7.112 -24.492 6.774 26.388 Atomic orbital electron populations 1.23050 0.78775 1.03802 1.01286 1.86169 1.20833 1.25759 1.89181 1.17822 0.88874 0.84560 1.01952 1.20691 0.99933 0.90275 1.11605 1.17107 0.90519 0.84286 1.00034 1.42676 1.25796 1.10861 1.54568 1.16046 0.84610 0.80102 0.79465 1.90893 1.21040 1.82406 1.51347 1.45575 1.21156 1.13958 1.57809 1.21668 0.99175 0.82895 0.94621 1.19339 0.93451 0.91738 0.98009 1.21076 1.03679 0.97714 1.33443 0.92123 1.25001 0.94860 0.98898 0.95599 1.69962 1.10316 1.29254 1.43766 0.86447 0.78988 0.82498 0.79577 1.19552 1.20940 1.20931 1.21115 0.92108 0.99383 1.00806 1.20993 1.00412 0.90576 1.05521 1.18110 0.88040 0.86140 1.04085 1.86208 1.18398 1.28331 1.88699 1.22431 0.79251 0.99937 0.96701 1.21825 0.99797 0.97102 1.01669 1.22354 1.01964 1.03201 0.96073 0.92762 0.92693 0.88355 0.84581 0.76020 0.77158 0.92509 0.92520 0.95910 0.95895 0.92889 0.83489 0.84429 0.90813 0.91559 0.90656 0.91662 0.91549 0.91152 0.91823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.65 10.28 -34.30 -0.35 -4.00 16 3 C 0.11 1.44 6.70 -39.15 -0.26 1.18 16 4 C -0.20 -2.37 8.95 -39.27 -0.35 -2.73 16 5 C 0.18 2.38 6.30 -83.63 -0.53 1.85 16 6 N -0.69 -8.98 5.35 -14.20 -0.08 -9.06 16 7 C 0.70 11.85 8.41 -86.92 -0.73 11.12 16 8 O -0.58 -11.87 13.79 5.28 0.07 -11.80 16 9 N -0.73 -12.39 5.56 -65.23 -0.36 -12.75 16 10 C 0.14 2.89 5.61 -4.05 -0.02 2.87 16 11 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 12 C -0.52 -14.25 9.11 -34.44 -0.31 -14.56 16 13 H 0.06 1.63 7.74 -52.48 -0.41 1.23 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 16 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.11 -1.61 8.69 -39.37 -0.34 -1.95 16 21 C -0.16 -1.93 8.44 -39.48 -0.33 -2.26 16 22 C 0.08 1.06 6.57 -39.13 -0.26 0.80 16 23 O -0.30 -3.69 9.59 -34.56 -0.33 -4.02 16 24 C 0.07 0.65 2.87 -26.73 -0.08 0.57 16 25 C -0.15 -1.02 9.56 37.16 0.36 -0.67 16 26 C -0.18 -1.35 9.31 37.16 0.35 -1.00 16 27 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 28 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.14 1.24 6.30 -52.49 -0.33 0.90 16 31 H 0.40 3.85 8.84 -40.82 -0.36 3.49 16 32 H 0.40 5.63 8.49 -40.82 -0.35 5.28 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 38 H 0.15 2.33 6.24 -52.49 -0.33 2.00 16 39 H 0.14 1.41 5.75 -52.49 -0.30 1.11 16 40 H 0.07 0.62 5.89 -51.93 -0.31 0.31 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.53 7.53 -51.93 -0.39 0.14 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.48 381.40 -8.28 -41.75 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -6.93 Total: 4.96 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -1.76 Total: -1.92 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: 0.30 Total: -46.91 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: -0.61 Total: -19.82 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.48 -8.28 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343795872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.753 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds