Wall clock time and date at job start Tue Mar 31 2020 15:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35988 * 117.00105 * 2 1 4 4 C 1.38509 * 120.03793 * 0.02562 * 3 2 1 5 5 C 1.38798 * 119.93501 * 179.97438 * 4 3 2 6 6 N 1.40138 * 120.00023 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00292 * 215.21152 * 6 5 4 8 8 O 1.21592 * 119.99792 * 355.79906 * 7 6 5 9 9 N 1.34774 * 119.99979 * 175.80070 * 7 6 5 10 10 C 1.46501 * 120.00060 * 179.97438 * 9 7 6 11 11 C 1.52992 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47474 * 180.02562 * 11 10 9 13 13 H 1.08006 * 119.99805 * 359.97438 * 12 11 10 14 14 C 1.37872 * 120.00280 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00195 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99753 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47511 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47054 * 120.00452 * 16 14 12 19 19 H 1.48503 * 109.47242 * 240.00125 * 16 14 12 20 20 C 1.38838 * 120.00800 * 0.02562 * 5 4 3 21 21 C 1.38200 * 120.06961 * 359.67723 * 20 5 4 22 22 C 1.38549 * 120.06739 * 0.59973 * 21 20 5 23 23 O 1.36069 * 119.99739 * 179.70118 * 22 21 20 24 24 C 1.42891 * 117.00555 * 4.43609 * 23 22 21 25 25 C 1.52999 * 109.47370 * 204.07082 * 24 23 22 26 26 C 1.53002 * 109.47100 * 84.07120 * 24 23 22 27 27 H 1.08996 * 109.47425 * 299.99725 * 1 2 3 28 28 H 1.09000 * 109.47096 * 60.00351 * 1 2 3 29 29 H 1.09003 * 109.47284 * 179.97438 * 1 2 3 30 30 H 1.08002 * 120.03352 * 359.95035 * 4 3 2 31 31 H 0.97002 * 119.99914 * 35.20325 * 6 5 4 32 32 H 0.97001 * 120.00421 * 359.97438 * 9 7 6 33 33 H 1.09004 * 109.47307 * 300.00480 * 10 9 7 34 34 H 1.09005 * 109.46974 * 59.99961 * 10 9 7 35 35 H 1.09001 * 109.47573 * 299.99993 * 11 10 9 36 36 H 1.09001 * 109.47436 * 60.00501 * 11 10 9 37 37 H 0.96996 * 119.99867 * 180.02562 * 15 14 12 38 38 H 1.07996 * 119.96206 * 180.02562 * 20 5 4 39 39 H 1.07999 * 119.96278 * 180.32342 * 21 20 5 40 40 H 1.08999 * 109.47177 * 324.07174 * 24 23 22 41 41 H 1.08999 * 109.47046 * 300.00173 * 25 24 23 42 42 H 1.08998 * 109.47386 * 180.02562 * 25 24 23 43 43 H 1.08998 * 109.47326 * 59.99988 * 25 24 23 44 44 H 1.08999 * 109.47060 * 59.99983 * 26 24 23 45 45 H 1.09001 * 109.47155 * 180.02562 * 26 24 23 46 46 H 1.09005 * 109.46769 * 299.99777 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2928 2.3738 0.0005 5 6 1.9252 3.6093 0.0011 6 7 1.1640 4.7860 0.0011 7 6 1.5990 5.8700 -0.6715 8 8 2.6868 5.8525 -1.2144 9 7 0.8281 6.9733 -0.7422 10 6 1.3011 8.1517 -1.4728 11 6 0.2446 9.2558 -1.3987 12 6 0.7308 10.4678 -2.1507 13 1 1.6971 10.4524 -2.6330 14 6 -0.0578 11.5964 -2.2232 15 7 -1.2342 11.6155 -1.6355 16 14 0.5454 13.0990 -3.1548 17 1 1.8906 12.8238 -3.7204 18 1 -0.4001 13.4107 -4.2567 19 1 0.6249 14.2569 -2.2284 20 6 3.3118 3.6797 0.0005 21 6 4.0639 2.5203 0.0062 22 6 3.4359 1.2854 -0.0001 23 8 4.1779 0.1448 -0.0007 24 6 5.5952 0.2927 0.1039 25 6 6.2819 -0.9364 -0.4948 26 6 5.9865 0.4287 1.5768 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2142 2.3186 0.0001 31 1 0.3241 4.8203 0.4850 32 1 -0.0398 6.9871 -0.3094 33 1 2.2298 8.5074 -1.0264 34 1 1.4774 7.8864 -2.5152 35 1 -0.6843 8.9004 -1.8448 36 1 0.0688 9.5211 -0.3562 37 1 -1.7891 12.4094 -1.6868 38 1 3.8030 4.6414 0.0014 39 1 5.1424 2.5771 0.0111 40 1 5.9085 1.1845 -0.4390 41 1 5.9687 -1.8281 0.0481 42 1 7.3631 -0.8238 -0.4146 43 1 6.0032 -1.0333 -1.5441 44 1 5.6732 -0.4630 2.1197 45 1 7.0677 0.5420 1.6566 46 1 5.4973 1.3044 2.0033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343795872.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:24 Heat of formation + Delta-G solvation = -105.483969 kcal Electronic energy + Delta-G solvation = -26469.118636 eV Core-core repulsion = 22551.742825 eV Total energy + Delta-G solvation = -3917.375811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.96554 -41.05106 -39.68275 -38.28130 -36.56504 -35.46343 -34.79961 -33.87353 -31.66061 -31.24944 -29.74805 -28.22783 -27.83263 -26.65299 -24.27962 -23.99334 -22.79138 -21.92109 -21.71933 -19.80128 -19.57058 -18.74324 -18.39733 -17.47322 -17.07261 -16.88612 -16.63569 -16.47341 -16.17291 -15.96106 -15.76836 -15.54434 -15.24055 -15.05737 -14.40723 -14.31521 -14.22959 -13.79657 -13.57445 -13.32031 -13.20964 -13.12982 -12.98371 -12.89792 -12.57941 -12.51420 -12.31656 -12.28520 -12.14366 -11.89627 -11.65989 -11.55265 -11.46394 -11.19457 -10.75860 -10.60468 -10.05143 -9.60728 -8.52194 -8.23964 -6.33692 0.19462 0.37074 1.41376 1.42380 1.53476 1.58425 2.02200 2.26032 2.34803 2.41485 2.72163 3.11220 3.22401 3.76554 3.83635 4.00800 4.09179 4.16658 4.16994 4.23724 4.38808 4.43711 4.46806 4.52185 4.52990 4.65622 4.72752 4.78162 4.83975 4.87016 4.88181 4.93335 5.18915 5.23494 5.24690 5.28543 5.34298 5.38063 5.50372 5.59995 5.76427 5.79510 5.96654 6.15194 6.17226 6.62980 6.79716 6.99484 7.35543 7.46499 8.88017 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.021937 B = 0.002087 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.093383 B =13415.592361 C =14368.965823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.106 3.894 4 C -0.191 4.191 5 C 0.158 3.842 6 N -0.671 5.671 7 C 0.699 3.301 8 O -0.616 6.616 9 N -0.725 5.725 10 C 0.160 3.840 11 C 0.023 3.977 12 C -0.544 4.544 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.926 5.926 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.277 1.277 20 C -0.132 4.132 21 C -0.154 4.154 22 C 0.075 3.925 23 O -0.317 6.317 24 C 0.062 3.938 25 C -0.144 4.144 26 C -0.174 4.174 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.118 0.882 30 H 0.164 0.836 31 H 0.423 0.577 32 H 0.410 0.590 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.265 0.735 38 H 0.126 0.874 39 H 0.153 0.847 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.091 0.909 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -26.619 7.466 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.060 3.940 4 C -0.212 4.212 5 C 0.063 3.937 6 N -0.320 5.320 7 C 0.399 3.601 8 O -0.496 6.496 9 N -0.379 5.379 10 C 0.036 3.964 11 C -0.015 4.015 12 C -0.583 4.583 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.789 3.211 17 H -0.190 1.190 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.153 4.153 21 C -0.173 4.173 22 C 0.029 3.971 23 O -0.232 6.232 24 C 0.007 3.993 25 C -0.201 4.201 26 C -0.232 4.232 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.137 0.863 30 H 0.182 0.818 31 H 0.262 0.738 32 H 0.246 0.754 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.144 0.856 39 H 0.171 0.829 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.117 0.883 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.110 0.890 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.993 -26.839 6.971 28.859 hybrid contribution -0.882 1.459 -0.032 1.705 sum 7.112 -25.381 6.939 27.256 Atomic orbital electron populations 1.23370 0.76571 1.05618 1.02294 1.86156 1.23184 1.25383 1.89013 1.18038 0.89134 0.85222 1.01653 1.20844 1.01232 0.89042 1.10099 1.17245 0.90418 0.84777 1.01271 1.42349 1.26305 1.09666 1.53706 1.16084 0.83989 0.80615 0.79409 1.90877 1.22646 1.83136 1.52946 1.45212 1.21868 1.13125 1.57744 1.21133 0.97607 0.83256 0.94409 1.19143 0.93672 0.92067 0.96604 1.21488 1.03824 0.99098 1.33847 0.92265 1.25856 0.94996 1.01933 0.96452 1.70057 1.11353 1.30280 1.44868 0.85406 0.78640 0.78728 0.78329 1.18977 1.20318 1.20277 1.21048 0.92850 0.99023 1.02338 1.21076 1.01162 0.89996 1.05048 1.18322 0.88638 0.86410 1.03719 1.86200 1.20086 1.28272 1.88602 1.22745 0.77802 1.01012 0.97776 1.21851 1.01006 0.96157 1.01052 1.22328 1.03257 1.02585 0.94985 0.91298 0.92010 0.86333 0.81815 0.73826 0.75448 0.93420 0.93599 0.97179 0.97106 0.92579 0.85622 0.82938 0.90585 0.91606 0.88323 0.92250 0.91713 0.88983 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.23 10.28 -79.46 -0.82 -8.05 16 3 C 0.11 2.57 6.70 22.55 0.15 2.72 16 4 C -0.19 -4.15 8.95 22.47 0.20 -3.95 16 5 C 0.16 4.15 6.30 38.09 0.24 4.39 16 6 N -0.67 -16.77 5.35 -317.10 -1.70 -18.47 16 7 C 0.70 23.58 8.41 179.06 1.50 25.08 16 8 O -0.62 -25.63 13.79 -4.01 -0.06 -25.69 16 9 N -0.73 -24.33 5.56 -478.53 -2.66 -27.00 16 10 C 0.16 6.74 5.61 86.38 0.48 7.22 16 11 C 0.02 1.12 5.09 29.85 0.15 1.27 16 12 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 13 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 14 C 0.01 0.35 5.46 84.65 0.46 0.81 16 15 N -0.93 -53.62 13.29 21.45 0.28 -53.33 16 16 Si 0.96 43.30 29.54 68.60 2.03 45.33 16 17 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 20 C -0.13 -3.79 8.69 22.40 0.19 -3.59 16 21 C -0.15 -3.81 8.44 22.33 0.19 -3.62 16 22 C 0.08 1.90 6.57 22.56 0.15 2.05 16 23 O -0.32 -7.57 9.59 -80.38 -0.77 -8.35 16 24 C 0.06 1.04 2.87 30.59 0.09 1.13 16 25 C -0.14 -1.80 9.56 71.98 0.69 -1.11 16 26 C -0.17 -2.43 9.31 71.98 0.67 -1.76 16 27 H 0.07 0.68 7.66 -2.39 -0.02 0.66 16 28 H 0.06 0.71 7.66 -2.39 -0.02 0.69 16 29 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.16 2.51 6.30 -2.91 -0.02 2.49 16 31 H 0.42 7.26 8.84 -92.71 -0.82 6.44 16 32 H 0.41 11.33 8.49 -92.71 -0.79 10.54 16 33 H 0.05 2.09 8.14 -2.38 -0.02 2.07 16 34 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 35 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.01 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 38 H 0.13 4.16 6.24 -2.91 -0.02 4.14 16 39 H 0.15 3.12 5.75 -2.91 -0.02 3.10 16 40 H 0.08 1.22 5.89 -2.39 -0.01 1.20 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 0.85 7.53 -2.38 -0.02 0.83 16 Total: -1.00 -72.22 381.40 2.24 -69.98 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: -0.59 Total: 23.38 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.52 Total: 2.19 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -4.07 Total: -98.80 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.64 Total: -42.08 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Total: -72.22 2.24 -69.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343795872.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.500 kcal (2) G-P(sol) polarization free energy of solvation -72.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds