Wall clock time and date at job start Tue Mar 31 2020 16:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 110.00447 * 2 1 4 4 C 1.54311 * 109.88826 * 238.88540 * 2 1 3 5 5 H 1.09004 * 110.86193 * 336.76265 * 4 2 1 6 6 C 1.53004 * 110.70782 * 99.92759 * 4 2 1 7 7 F 1.39895 * 109.47352 * 175.05459 * 6 4 2 8 8 F 1.39901 * 109.47068 * 295.05008 * 6 4 2 9 9 F 1.39904 * 109.46915 * 55.05006 * 6 4 2 10 10 C 1.55139 * 103.01803 * 218.30804 * 4 2 1 11 11 C 1.54903 * 101.65461 * 35.65605 * 10 4 2 12 12 N 1.47445 * 109.88845 * 121.11212 * 2 1 3 13 13 C 1.46896 * 110.99997 * 356.15203 * 12 2 1 14 14 C 1.53003 * 109.46959 * 190.71366 * 13 12 2 15 15 C 1.50702 * 109.47196 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99575 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00335 * 179.97438 * 15 14 13 18 18 C 1.46506 * 119.99594 * 0.02562 * 17 15 14 19 19 C 1.46501 * 120.00308 * 180.02562 * 17 15 14 20 20 C 1.50700 * 109.46743 * 269.99953 * 19 17 15 21 21 H 1.07996 * 120.00425 * 0.02562 * 20 19 17 22 22 C 1.37879 * 119.99720 * 179.97438 * 20 19 17 23 23 N 1.31521 * 119.99959 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99952 * 180.02562 * 22 20 19 25 25 H 1.48490 * 109.47132 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46972 * 120.00271 * 24 22 20 27 27 H 1.48502 * 109.46999 * 239.99743 * 24 22 20 28 28 H 1.08998 * 109.46992 * 300.33941 * 1 2 3 29 29 H 1.08997 * 109.47001 * 60.33840 * 1 2 3 30 30 H 1.08999 * 109.46572 * 180.33705 * 1 2 3 31 31 H 1.08998 * 110.99159 * 277.55940 * 10 4 2 32 32 H 1.09008 * 110.98821 * 153.74422 * 10 4 2 33 33 H 1.08996 * 110.37333 * 204.09976 * 11 10 4 34 34 H 1.08997 * 110.37656 * 81.75740 * 11 10 4 35 35 H 1.09000 * 109.47497 * 70.71491 * 13 12 2 36 36 H 1.09001 * 109.47141 * 310.71545 * 13 12 2 37 37 H 1.09000 * 109.46913 * 59.99768 * 14 13 12 38 38 H 1.08996 * 109.47080 * 299.99688 * 14 13 12 39 39 H 1.09001 * 109.47060 * 90.00388 * 18 17 15 40 40 H 1.09004 * 109.47073 * 209.99877 * 18 17 15 41 41 H 1.09000 * 109.47212 * 329.99960 * 18 17 15 42 42 H 1.09000 * 109.46877 * 29.99967 * 19 17 15 43 43 H 1.09000 * 109.47251 * 150.00072 * 19 17 15 44 44 H 0.96994 * 119.99936 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0550 -0.7498 -1.2423 5 1 1.3069 -1.4471 -1.6198 6 6 2.4711 0.2376 -2.3345 7 9 3.0460 -0.4617 -3.4010 8 9 1.3454 0.9344 -2.7867 9 9 3.4022 1.1430 -1.8144 10 6 3.2892 -1.5133 -0.6940 11 6 2.8190 -1.8833 0.7348 12 7 2.0317 -0.7164 1.1871 13 6 0.9241 -1.1339 2.0570 14 6 1.4832 -1.6297 3.3921 15 6 0.3469 -2.0575 4.2848 16 8 -0.7974 -1.9744 3.8916 17 7 0.6023 -2.5332 5.5196 18 6 1.9847 -2.6340 5.9943 19 6 -0.5023 -2.9496 6.3872 20 6 -0.9652 -1.7747 7.2098 21 1 -0.4850 -0.8140 7.0972 22 6 -2.0025 -1.9262 8.1053 23 7 -2.5877 -3.0961 8.2421 24 14 -2.5768 -0.4698 9.1244 25 1 -1.7617 0.7240 8.7849 26 1 -4.0059 -0.1928 8.8304 27 1 -2.4201 -0.7829 10.5675 28 1 -0.3633 0.5191 0.8869 29 1 -0.3633 0.5086 -0.8930 30 1 -0.3632 -1.0277 0.0060 31 1 4.1658 -0.8663 -0.6614 32 1 3.4882 -2.4084 -1.2836 33 1 3.6773 -2.0383 1.3885 34 1 2.1941 -2.7759 0.7095 35 1 0.3669 -1.9376 1.5755 36 1 0.2610 -0.2869 2.2328 37 1 2.0403 -0.8260 3.8735 38 1 2.1462 -2.4768 3.2163 39 1 2.2666 -1.7061 6.4918 40 1 2.0680 -3.4629 6.6972 41 1 2.6480 -2.8081 5.1470 42 1 -1.3280 -3.3126 5.7752 43 1 -0.1636 -3.7461 7.0498 44 1 -3.3172 -3.2028 8.8723 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348242411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:17 Heat of formation + Delta-G solvation = -184.298728 kcal Electronic energy + Delta-G solvation = -28151.971634 eV Core-core repulsion = 23689.321418 eV Total energy + Delta-G solvation = -4462.650215 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.41636 -47.90510 -47.87929 -40.08434 -38.78627 -34.87521 -33.86132 -32.60622 -31.89275 -30.17014 -27.79100 -26.92065 -25.79093 -24.56523 -23.85213 -22.38792 -21.48974 -19.88757 -18.83519 -18.42721 -18.35520 -18.00881 -16.57739 -16.51715 -15.81585 -15.57629 -15.31015 -14.91709 -14.80640 -14.67394 -14.38723 -14.31782 -14.18367 -14.04870 -14.01292 -13.86697 -13.36522 -13.20898 -12.64028 -12.54209 -12.35328 -12.10602 -11.99907 -11.87957 -11.73974 -11.53756 -11.47176 -11.34418 -11.24076 -11.14324 -10.85831 -10.64452 -10.53905 -10.15507 -9.61231 -8.91158 -8.54470 -8.44070 -7.64256 -6.04786 -4.09236 2.40104 3.29594 3.35941 3.37241 3.39915 3.44866 3.46231 3.58304 3.69322 4.09688 4.25350 4.33149 4.45717 4.57447 4.78828 4.84567 4.98324 5.07656 5.19668 5.21400 5.25173 5.29693 5.33350 5.51129 5.55163 5.56822 5.63744 5.72241 5.79787 5.92293 5.97701 6.08641 6.15146 6.20448 6.72789 6.83439 7.04876 7.42964 7.54380 7.91834 8.23330 8.41577 8.90249 9.09362 9.55953 11.03399 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.026006 B = 0.002473 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.423689 B =11319.690844 C =11816.524942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 H 0.097 0.903 4 C -0.160 4.160 5 H 0.121 0.879 6 C 0.462 3.538 7 F -0.184 7.184 8 F -0.182 7.182 9 F -0.178 7.178 10 C -0.122 4.122 11 C 0.042 3.958 12 N -0.521 5.521 13 C 0.061 3.939 14 C -0.134 4.134 15 C 0.504 3.496 16 O -0.546 6.546 17 N -0.603 5.603 18 C 0.086 3.914 19 C 0.244 3.756 20 C -0.524 4.524 21 H 0.057 0.943 22 C 0.060 3.940 23 N -0.896 5.896 24 Si 0.898 3.102 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.284 1.284 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.447 3.023 -20.064 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.027 4.027 3 H 0.115 0.885 4 C -0.181 4.181 5 H 0.139 0.861 6 C 0.408 3.592 7 F -0.166 7.166 8 F -0.163 7.163 9 F -0.160 7.160 10 C -0.160 4.160 11 C -0.086 4.086 12 N -0.245 5.245 13 C -0.066 4.066 14 C -0.175 4.175 15 C 0.291 3.709 16 O -0.424 6.424 17 N -0.335 5.335 18 C -0.058 4.058 19 C 0.125 3.875 20 C -0.563 4.563 21 H 0.076 0.924 22 C -0.142 4.142 23 N -0.535 5.535 24 Si 0.726 3.274 25 H -0.198 1.198 26 H -0.209 1.209 27 H -0.210 1.210 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.049 0.951 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.013 3.312 -19.858 24.529 hybrid contribution -0.745 0.365 0.056 0.831 sum 13.268 3.677 -19.802 24.118 Atomic orbital electron populations 1.22476 0.94237 1.03283 1.03539 1.22401 0.95142 0.98791 0.86393 0.88548 1.23919 1.02002 0.97337 0.94813 0.86091 1.20320 0.74914 0.81301 0.82685 1.93182 1.85299 1.78780 1.59304 1.93193 1.51895 1.80931 1.90326 1.93185 1.66851 1.69529 1.86415 1.22806 0.96074 1.00627 0.96534 1.23121 0.98489 0.92662 0.94311 1.63735 1.22676 1.23024 1.15030 1.22189 0.91747 1.00897 0.91808 1.21620 0.98027 1.02265 0.95596 1.20286 0.89948 0.78323 0.82391 1.90662 1.22849 1.54760 1.74176 1.48156 1.08033 1.62561 1.14776 1.21623 0.83135 1.01824 0.99234 1.19304 0.84256 0.95412 0.88517 1.21471 1.17186 0.96502 1.21140 0.92428 1.24948 0.96079 0.96048 0.97136 1.69943 1.24183 1.22851 1.36535 0.86439 0.78709 0.82603 0.79658 1.19777 1.20880 1.20965 0.90281 0.91651 0.91593 0.89284 0.89385 0.89133 0.92682 0.93360 0.88996 0.88709 0.89916 0.93172 0.91502 0.92553 0.93903 0.95069 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.75 7.84 37.16 0.29 -1.46 16 2 C 0.08 0.77 3.42 -66.72 -0.23 0.55 16 3 H 0.10 0.96 7.18 -51.93 -0.37 0.59 16 4 C -0.16 -1.26 2.48 -88.80 -0.22 -1.48 16 5 H 0.12 0.85 7.86 -51.93 -0.41 0.44 16 6 C 0.46 4.06 2.70 37.16 0.10 4.16 16 7 F -0.18 -1.67 17.12 2.25 0.04 -1.63 16 8 F -0.18 -1.75 16.84 2.25 0.04 -1.71 16 9 F -0.18 -1.73 15.75 2.25 0.04 -1.69 16 10 C -0.12 -0.86 6.30 -24.60 -0.16 -1.02 16 11 C 0.04 0.35 5.82 -2.30 -0.01 0.33 16 12 N -0.52 -5.48 5.16 -223.35 -1.15 -6.63 16 13 C 0.06 0.80 2.98 -3.82 -0.01 0.79 16 14 C -0.13 -1.88 4.31 -27.88 -0.12 -2.00 16 15 C 0.50 10.13 7.67 -10.99 -0.08 10.04 16 16 O -0.55 -13.31 15.56 5.55 0.09 -13.22 16 17 N -0.60 -12.61 2.86 -182.95 -0.52 -13.13 16 18 C 0.09 1.33 10.29 59.85 0.62 1.94 16 19 C 0.24 6.38 5.20 -5.19 -0.03 6.36 16 20 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 21 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.90 -26.68 13.29 55.43 0.74 -25.95 16 24 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.08 0.87 6.41 -51.93 -0.33 0.54 16 29 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 30 H 0.07 0.67 6.93 -51.93 -0.36 0.31 16 31 H 0.09 0.64 7.50 -51.93 -0.39 0.25 16 32 H 0.09 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.47 7.61 -51.93 -0.40 0.07 16 35 H 0.05 0.66 6.79 -51.93 -0.35 0.31 16 36 H 0.09 1.34 5.99 -51.93 -0.31 1.02 16 37 H 0.09 1.26 8.11 -51.93 -0.42 0.84 16 38 H 0.08 0.96 6.78 -51.93 -0.35 0.61 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.00 7.89 -51.93 -0.41 0.59 16 41 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 42 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 43 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16 44 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 360.42 15.07 5.43 5.43 Total: -1.00 -32.74 360.42 -7.05 -39.79 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.45 Total: -2.74 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.27 Total: 4.59 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: -0.94 Total: -45.71 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.11 Total: -5.03 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.74 -7.05 -39.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348242411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.510 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds