Wall clock time and date at job start Tue Mar 31 2020 15:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 O 1.42893 * 109.47462 * 179.97438 * 3 2 1 5 5 C 1.35994 * 117.00139 * 179.97438 * 4 3 2 6 6 C 1.38566 * 120.07374 * 0.02614 * 5 4 3 7 7 C 1.38244 * 119.99897 * 179.70229 * 6 5 4 8 8 C 1.38258 * 120.14309 * 0.55108 * 7 6 5 9 9 C 1.50700 * 119.92241 * 179.72664 * 8 7 6 10 10 N 1.46498 * 109.46769 * 269.71911 * 9 8 7 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 8 12 12 O 1.21593 * 119.99949 * 0.28071 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.27942 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47138 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99609 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47136 * 90.00100 * 19 17 15 21 21 H 1.48500 * 109.46954 * 210.00202 * 19 17 15 22 22 H 1.48499 * 109.47078 * 330.00388 * 19 17 15 23 23 C 1.38236 * 120.14919 * 359.44412 * 8 7 6 24 24 C 1.38569 * 119.99808 * 0.28047 * 23 8 7 25 25 O 1.35995 * 120.07197 * 179.97438 * 24 23 8 26 26 C 1.42904 * 117.00124 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47238 * 60.00001 * 1 2 3 28 28 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 299.99720 * 1 2 3 30 30 H 1.09002 * 109.46971 * 239.99698 * 2 1 3 31 31 H 1.09001 * 109.47238 * 119.99999 * 2 1 3 32 32 H 1.09006 * 109.46907 * 60.00086 * 3 2 1 33 33 H 1.09001 * 109.47004 * 300.00142 * 3 2 1 34 34 H 1.07997 * 119.99616 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.92626 * 180.29386 * 7 6 5 36 36 H 1.09004 * 109.47210 * 149.72269 * 9 8 7 37 37 H 1.08994 * 109.47121 * 29.72239 * 9 8 7 38 38 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 39 39 H 0.97000 * 119.99549 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47602 * 299.99940 * 14 13 11 41 41 H 1.09006 * 109.46868 * 59.99976 * 14 13 11 42 42 H 0.96997 * 119.99506 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.00024 * 180.25651 * 23 8 7 44 44 H 1.09004 * 109.46890 * 59.99836 * 26 25 24 45 45 H 1.08994 * 109.46980 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.46799 * 299.99833 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0863 2.6542 0.0001 6 6 3.3331 3.8173 -0.0003 7 6 3.9623 5.0483 0.0054 8 6 5.3429 5.1223 0.0002 9 6 6.0236 6.4668 0.0002 10 7 6.2447 6.9022 -1.3810 11 6 6.8383 8.0869 -1.6272 12 8 7.1949 8.7920 -0.7030 13 7 7.0367 8.4901 -2.8979 14 6 7.6824 9.7775 -3.1656 15 6 7.7843 9.9885 -4.6543 16 1 7.4056 9.2388 -5.3331 17 6 8.3601 11.1392 -5.1497 18 7 8.8209 12.0524 -4.3230 19 14 8.4858 11.4010 -6.9949 20 1 7.2677 12.0983 -7.4800 21 1 9.6824 12.2268 -7.2973 22 1 8.6071 10.0862 -7.6744 23 6 6.1002 3.9659 0.0007 24 6 5.4759 2.7288 0.0007 25 8 6.2195 1.5902 0.0007 26 6 7.6403 1.7432 0.0013 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2546 3.7621 0.0001 35 1 3.3741 5.9540 0.0099 36 1 6.9816 6.3891 0.5145 37 1 5.3935 7.1930 0.5137 38 1 5.9600 6.3399 -2.1183 39 1 6.7526 7.9273 -3.6352 40 1 7.0907 10.5796 -2.7243 41 1 8.6813 9.7806 -2.7293 42 1 9.2256 12.8621 -4.6715 43 1 7.1785 4.0266 0.0008 44 1 7.9462 2.2928 0.8916 45 1 8.1115 0.7603 0.0017 46 1 7.9468 2.2931 -0.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426418798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:44 Heat of formation + Delta-G solvation = -92.664098 kcal Electronic energy + Delta-G solvation = -26055.700149 eV Core-core repulsion = 22138.880250 eV Total energy + Delta-G solvation = -3916.819899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87421 -39.20082 -38.82985 -37.50538 -34.71886 -34.17759 -33.79434 -32.28735 -30.72757 -30.43424 -27.93249 -27.20778 -26.87888 -25.15041 -23.02159 -22.52613 -21.67127 -21.29349 -20.14528 -18.75579 -18.13011 -17.29937 -16.89662 -16.71801 -16.07916 -15.86450 -15.62726 -15.12941 -14.90138 -14.67727 -14.62467 -14.40799 -14.24922 -13.84121 -13.46686 -13.10247 -13.09065 -12.75471 -12.60935 -12.46041 -12.17957 -11.94010 -11.83139 -11.74366 -11.61088 -11.34394 -11.25136 -11.21872 -10.96340 -10.93565 -10.86566 -10.28374 -9.44333 -9.34795 -8.96657 -8.76066 -8.65157 -8.03379 -7.72755 -6.13438 -4.19801 0.98444 1.14108 2.83526 3.02676 3.24019 3.26041 3.32326 3.35001 3.74196 3.98119 4.35170 4.37671 4.43943 4.48794 4.61482 4.70466 4.75638 4.86249 4.95830 4.97379 5.00519 5.04192 5.15925 5.18948 5.21431 5.22586 5.29044 5.35762 5.50804 5.60953 5.61195 5.73442 5.81457 5.90632 6.00025 6.37732 6.42457 6.79840 6.86694 7.15276 7.32130 7.54508 7.58202 7.59851 7.93723 8.07195 8.79094 8.97367 9.35997 9.50689 10.96801 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002040 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.533818 B =13721.510900 C =14147.170522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.057 3.943 4 O -0.306 6.306 5 C 0.105 3.895 6 C -0.176 4.176 7 C -0.095 4.095 8 C -0.098 4.098 9 C 0.186 3.814 10 N -0.754 5.754 11 C 0.693 3.307 12 O -0.602 6.602 13 N -0.729 5.729 14 C 0.267 3.733 15 C -0.541 4.541 16 H 0.062 0.938 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.904 3.096 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.152 4.152 24 C 0.096 3.904 25 O -0.308 6.308 26 C 0.025 3.975 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.392 0.608 39 H 0.386 0.614 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.265 0.735 43 H 0.138 0.862 44 H 0.056 0.944 45 H 0.099 0.901 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -25.417 9.628 30.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.019 4.019 4 O -0.220 6.220 5 C 0.060 3.940 6 C -0.194 4.194 7 C -0.114 4.114 8 C -0.099 4.099 9 C 0.061 3.939 10 N -0.412 5.412 11 C 0.392 3.608 12 O -0.481 6.481 13 N -0.381 5.381 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.141 4.141 18 N -0.523 5.523 19 Si 0.731 3.269 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.171 4.171 24 C 0.050 3.950 25 O -0.221 6.221 26 C -0.070 4.070 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.153 0.847 35 H 0.149 0.851 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.225 0.775 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.075 0.925 43 H 0.156 0.844 44 H 0.074 0.926 45 H 0.118 0.882 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.960 -24.911 10.488 29.975 hybrid contribution -0.116 0.053 -1.669 1.674 sum -13.076 -24.858 8.819 29.440 Atomic orbital electron populations 1.21695 0.94240 1.02547 1.02254 1.21470 0.95956 0.94842 1.03793 1.22892 0.78677 0.98889 1.01393 1.86144 1.20885 1.26064 1.88893 1.18234 0.89061 0.85141 1.01610 1.21058 0.99951 0.91392 1.07033 1.20853 0.93784 0.97285 0.99458 1.19677 0.93471 0.94463 1.02268 1.19844 0.99712 0.90640 0.83691 1.45207 1.67020 1.21364 1.07588 1.16158 0.79073 0.80974 0.84561 1.90874 1.57869 1.55618 1.43737 1.45717 1.63951 1.24364 1.04117 1.18980 0.92682 0.78031 0.95751 1.21235 1.40859 1.04795 0.91100 0.91964 1.24948 0.94989 0.95588 0.98543 1.69984 1.38909 1.08838 1.34552 0.86411 0.77691 0.78240 0.84518 1.20498 1.21028 1.19804 1.21043 1.00609 0.90402 1.05067 1.18209 0.88209 0.86100 1.02461 1.86160 1.18750 1.28141 1.89095 1.23093 0.78482 1.03878 1.01562 0.92312 0.91729 0.92351 0.90785 0.90827 0.92066 0.92004 0.84726 0.85118 0.91195 0.90951 0.77480 0.78172 0.95733 0.95748 0.92491 0.84407 0.92581 0.88219 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.91 37.16 0.37 -0.28 16 2 C -0.12 -0.74 6.30 -26.73 -0.17 -0.91 16 3 C 0.06 0.42 4.74 37.16 0.18 0.59 16 4 O -0.31 -3.37 9.92 -34.22 -0.34 -3.71 16 5 C 0.11 1.19 6.70 -39.12 -0.26 0.92 16 6 C -0.18 -1.69 9.04 -39.46 -0.36 -2.04 16 7 C -0.09 -0.96 9.69 -39.57 -0.38 -1.34 16 8 C -0.10 -1.09 5.25 -104.62 -0.55 -1.64 16 9 C 0.19 2.47 5.80 -5.19 -0.03 2.44 16 10 N -0.75 -11.49 5.55 -66.41 -0.37 -11.86 16 11 C 0.69 14.48 8.57 -86.92 -0.74 13.73 16 12 O -0.60 -15.20 16.34 5.28 0.09 -15.11 16 13 N -0.73 -15.85 5.55 -66.41 -0.37 -16.22 16 14 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 15 C -0.54 -14.87 9.28 -34.44 -0.32 -15.19 16 16 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 18 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 19 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 20 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.15 -1.64 8.69 -39.46 -0.34 -1.99 16 24 C 0.10 1.11 6.70 -39.12 -0.26 0.85 16 25 O -0.31 -3.54 10.28 -34.23 -0.35 -3.89 16 26 C 0.02 0.19 9.81 101.05 0.99 1.18 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 33 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.14 0.98 6.30 -52.49 -0.33 0.65 16 35 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 36 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 38 H 0.39 5.03 8.48 -40.82 -0.35 4.68 16 39 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 40 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.14 1.33 6.30 -52.49 -0.33 1.00 16 44 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 45 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 LS Contribution 388.48 15.07 5.85 5.85 Total: -1.00 -34.78 388.48 -8.90 -43.67 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -7.12 Total: 5.64 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.01 Total: 5.19 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: 0.00 Total: -53.64 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.61 Total: -22.70 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.78 -8.90 -43.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.991 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds