Wall clock time and date at job start Tue Mar 31 2020 15:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47241 * 2 1 4 4 O 1.42893 * 109.47462 * 179.97438 * 3 2 1 5 5 C 1.35994 * 117.00139 * 179.97438 * 4 3 2 6 6 C 1.38566 * 120.07374 * 0.02614 * 5 4 3 7 7 C 1.38244 * 119.99897 * 179.70229 * 6 5 4 8 8 C 1.38258 * 120.14309 * 0.55108 * 7 6 5 9 9 C 1.50700 * 119.92241 * 179.72664 * 8 7 6 10 10 N 1.46498 * 109.46769 * 269.71911 * 9 8 7 11 11 C 1.34777 * 119.99828 * 179.72341 * 10 9 8 12 12 O 1.21593 * 119.99949 * 0.28071 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.27942 * 11 10 9 14 14 C 1.46499 * 120.00065 * 180.02562 * 13 11 10 15 15 C 1.50703 * 109.47138 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99609 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47136 * 90.00100 * 19 17 15 21 21 H 1.48500 * 109.46954 * 210.00202 * 19 17 15 22 22 H 1.48499 * 109.47078 * 330.00388 * 19 17 15 23 23 C 1.38236 * 120.14919 * 359.44412 * 8 7 6 24 24 C 1.38569 * 119.99808 * 0.28047 * 23 8 7 25 25 O 1.35995 * 120.07197 * 179.97438 * 24 23 8 26 26 C 1.42904 * 117.00124 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47238 * 60.00001 * 1 2 3 28 28 H 1.09000 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 299.99720 * 1 2 3 30 30 H 1.09002 * 109.46971 * 239.99698 * 2 1 3 31 31 H 1.09001 * 109.47238 * 119.99999 * 2 1 3 32 32 H 1.09006 * 109.46907 * 60.00086 * 3 2 1 33 33 H 1.09001 * 109.47004 * 300.00142 * 3 2 1 34 34 H 1.07997 * 119.99616 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.92626 * 180.29386 * 7 6 5 36 36 H 1.09004 * 109.47210 * 149.72269 * 9 8 7 37 37 H 1.08994 * 109.47121 * 29.72239 * 9 8 7 38 38 H 0.97001 * 120.00384 * 0.02562 * 10 9 8 39 39 H 0.97000 * 119.99549 * 359.97438 * 13 11 10 40 40 H 1.09000 * 109.47602 * 299.99940 * 14 13 11 41 41 H 1.09006 * 109.46868 * 59.99976 * 14 13 11 42 42 H 0.96997 * 119.99506 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.00024 * 180.25651 * 23 8 7 44 44 H 1.09004 * 109.46890 * 59.99836 * 26 25 24 45 45 H 1.08994 * 109.46980 * 179.97438 * 26 25 24 46 46 H 1.08997 * 109.46799 * 299.99833 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4689 1.4425 0.0006 5 6 4.0863 2.6542 0.0001 6 6 3.3331 3.8173 -0.0003 7 6 3.9623 5.0483 0.0054 8 6 5.3429 5.1223 0.0002 9 6 6.0236 6.4668 0.0002 10 7 6.2447 6.9022 -1.3810 11 6 6.8383 8.0869 -1.6272 12 8 7.1949 8.7920 -0.7030 13 7 7.0367 8.4901 -2.8979 14 6 7.6824 9.7775 -3.1656 15 6 7.7843 9.9885 -4.6543 16 1 7.4056 9.2388 -5.3331 17 6 8.3601 11.1392 -5.1497 18 7 8.8209 12.0524 -4.3230 19 14 8.4858 11.4010 -6.9949 20 1 7.2677 12.0983 -7.4800 21 1 9.6824 12.2268 -7.2973 22 1 8.6071 10.0862 -7.6744 23 6 6.1002 3.9659 0.0007 24 6 5.4759 2.7288 0.0007 25 8 6.2195 1.5902 0.0007 26 6 7.6403 1.7432 0.0013 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 2.2546 3.7621 0.0001 35 1 3.3741 5.9540 0.0099 36 1 6.9816 6.3891 0.5145 37 1 5.3935 7.1930 0.5137 38 1 5.9600 6.3399 -2.1183 39 1 6.7526 7.9273 -3.6352 40 1 7.0907 10.5796 -2.7243 41 1 8.6813 9.7806 -2.7293 42 1 9.2256 12.8621 -4.6715 43 1 7.1785 4.0266 0.0008 44 1 7.9462 2.2928 0.8916 45 1 8.1115 0.7603 0.0017 46 1 7.9468 2.2931 -0.8884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426418798.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:43 Heat of formation + Delta-G solvation = -116.775242 kcal Electronic energy + Delta-G solvation = -26056.745687 eV Core-core repulsion = 22138.880250 eV Total energy + Delta-G solvation = -3917.865437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68186 -40.80850 -39.58514 -38.42787 -36.22946 -35.58003 -34.72894 -34.28257 -31.73856 -31.25305 -29.34194 -28.32945 -27.59708 -26.28348 -24.46701 -23.66187 -22.51079 -21.97538 -21.85694 -19.90953 -19.43592 -18.30787 -17.87821 -17.68004 -17.38859 -17.27739 -16.54024 -16.45505 -16.41842 -15.83656 -15.55416 -15.36451 -15.00954 -14.90300 -14.79702 -14.60805 -14.15472 -14.00782 -13.65957 -13.43469 -13.24478 -12.97358 -12.93657 -12.86664 -12.69455 -12.43960 -12.28688 -12.21128 -12.11458 -11.99201 -11.81734 -11.52170 -11.45826 -11.24469 -10.78898 -10.27211 -9.77625 -9.56946 -8.85632 -8.26826 -6.43034 0.14693 0.32268 1.44463 1.47124 1.58114 1.94516 2.17131 2.26315 2.32841 2.40482 2.70186 3.08041 3.56975 3.62989 3.72894 3.96652 3.97670 4.00434 4.14257 4.29859 4.30892 4.32706 4.38302 4.52493 4.57023 4.58932 4.63848 4.73543 4.76511 4.82537 5.03857 5.11016 5.13645 5.19363 5.21777 5.29687 5.35862 5.49000 5.51330 5.53288 5.63084 5.69812 5.87091 6.08949 6.27386 6.57555 6.68724 7.26037 7.32273 7.73742 8.85406 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002040 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.533818 B =13721.510900 C =14147.170522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.049 3.951 4 O -0.325 6.325 5 C 0.095 3.905 6 C -0.170 4.170 7 C -0.092 4.092 8 C -0.103 4.103 9 C 0.188 3.812 10 N -0.728 5.728 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.723 5.723 14 C 0.285 3.715 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.986 3.014 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.257 1.257 23 C -0.151 4.151 24 C 0.079 3.921 25 O -0.328 6.328 26 C 0.018 3.982 27 H 0.062 0.938 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.160 0.840 35 H 0.145 0.855 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.408 0.592 39 H 0.404 0.596 40 H -0.013 1.013 41 H -0.014 1.014 42 H 0.269 0.731 43 H 0.145 0.855 44 H 0.062 0.938 45 H 0.118 0.882 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.932 -26.962 8.207 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.025 4.025 4 O -0.240 6.240 5 C 0.049 3.951 6 C -0.189 4.189 7 C -0.111 4.111 8 C -0.104 4.104 9 C 0.064 3.936 10 N -0.386 5.386 11 C 0.392 3.608 12 O -0.531 6.531 13 N -0.377 5.377 14 C 0.162 3.838 15 C -0.593 4.593 16 H 0.101 0.899 17 C -0.196 4.196 18 N -0.568 5.568 19 Si 0.809 3.191 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.180 1.180 23 C -0.170 4.170 24 C 0.034 3.966 25 O -0.242 6.242 26 C -0.076 4.076 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.177 0.823 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.244 0.756 39 H 0.239 0.761 40 H 0.005 0.995 41 H 0.004 0.996 42 H 0.077 0.923 43 H 0.163 0.837 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.491 -26.546 9.059 31.571 hybrid contribution 0.306 0.426 -1.124 1.241 sum -14.184 -26.120 7.935 30.764 Atomic orbital electron populations 1.21681 0.92752 1.03165 1.02765 1.21484 0.97133 0.94045 1.03247 1.23157 0.77004 0.99936 1.02419 1.86129 1.22816 1.26230 1.88826 1.18518 0.89300 0.85808 1.01428 1.21285 1.01128 0.90499 1.05950 1.21029 0.93388 0.98112 0.98573 1.19436 0.93911 0.93089 1.03972 1.19901 0.99748 0.91851 0.82093 1.44991 1.64977 1.19300 1.09293 1.16290 0.78977 0.82005 0.83522 1.90844 1.59776 1.57490 1.44984 1.45308 1.63958 1.23112 1.05331 1.18418 0.90342 0.79361 0.95729 1.21604 1.40922 1.05542 0.91204 0.89903 1.26060 0.94197 0.95094 1.04260 1.70146 1.39807 1.09568 1.37324 0.85142 0.77731 0.78760 0.77467 1.19607 1.20953 1.18034 1.21088 1.01037 0.90141 1.04723 1.18422 0.88755 0.86331 1.03117 1.86133 1.20370 1.28476 1.89209 1.23316 0.76949 1.05304 1.02043 0.91858 0.91110 0.91758 0.91428 0.91332 0.90875 0.90979 0.82272 0.83769 0.91732 0.91193 0.75582 0.76076 0.99545 0.99582 0.92263 0.83708 0.91894 0.86368 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.12 -1.31 6.30 30.59 0.19 -1.12 16 3 C 0.05 0.64 4.74 71.98 0.34 0.98 16 4 O -0.33 -6.83 9.92 -79.62 -0.79 -7.62 16 5 C 0.10 2.02 6.70 22.57 0.15 2.17 16 6 C -0.17 -2.89 9.04 22.35 0.20 -2.69 16 7 C -0.09 -1.67 9.69 22.28 0.22 -1.45 16 8 C -0.10 -2.15 5.25 -19.86 -0.10 -2.25 16 9 C 0.19 4.84 5.80 85.63 0.50 5.34 16 10 N -0.73 -21.47 5.55 -482.30 -2.68 -24.15 16 11 C 0.69 29.10 8.57 179.05 1.53 30.63 16 12 O -0.65 -33.67 16.34 -4.01 -0.07 -33.73 16 13 N -0.72 -31.56 5.55 -482.28 -2.68 -34.23 16 14 C 0.28 15.93 5.43 85.63 0.46 16.40 16 15 C -0.55 -30.45 9.28 25.60 0.24 -30.21 16 16 H 0.08 4.11 7.60 -2.91 -0.02 4.08 16 17 C 0.00 0.19 5.46 84.65 0.46 0.66 16 18 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 19 Si 0.99 42.47 29.54 68.60 2.03 44.49 16 20 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 21 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 23 C -0.15 -3.11 8.69 22.35 0.19 -2.91 16 24 C 0.08 1.77 6.70 22.57 0.15 1.92 16 25 O -0.33 -7.34 10.28 -79.63 -0.82 -8.16 16 26 C 0.02 0.27 9.81 113.37 1.11 1.38 16 27 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 33 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 34 H 0.16 1.83 6.30 -2.91 -0.02 1.81 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.18 16 36 H 0.06 1.76 8.08 -2.38 -0.02 1.75 16 37 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 38 H 0.41 9.67 8.48 -92.71 -0.79 8.88 16 39 H 0.40 14.57 8.34 -92.71 -0.77 13.80 16 40 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 41 H -0.01 -0.87 8.14 -2.38 -0.02 -0.88 16 42 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 43 H 0.15 2.67 6.30 -2.91 -0.02 2.65 16 44 H 0.06 0.81 7.66 -2.38 -0.02 0.79 16 45 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 Total: -1.00 -76.90 388.48 1.09 -75.81 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -0.56 Total: 25.07 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: 6.36 Total: 18.57 kcal Atomic # 7 Polarization: -109.37 SS G_CDS: -5.07 Total: -114.44 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -1.67 Total: -49.50 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -76.90 1.09 -75.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426418798.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.966 kcal (2) G-P(sol) polarization free energy of solvation -76.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds