Wall clock time and date at job start Tue Mar 31 2020 16:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.41086 * 2 1 4 4 C 1.55130 * 110.49621 * 237.64885 * 2 1 3 5 5 H 1.08993 * 111.19537 * 160.34861 * 4 2 1 6 6 C 1.53000 * 110.93959 * 36.44395 * 4 2 1 7 7 C 1.52998 * 109.47266 * 181.50664 * 6 4 2 8 8 F 1.39902 * 109.47228 * 59.99466 * 7 6 4 9 9 F 1.39899 * 109.47486 * 180.02562 * 7 6 4 10 10 F 1.39908 * 109.46878 * 300.00331 * 7 6 4 11 11 C 1.55159 * 101.48286 * 278.45456 * 4 2 1 12 12 C 1.54325 * 102.94202 * 324.33194 * 11 4 2 13 13 H 1.09005 * 109.88078 * 262.78196 * 12 11 4 14 14 C 1.52996 * 110.01007 * 141.68626 * 12 11 4 15 15 N 1.47022 * 107.27030 * 22.19417 * 12 11 4 16 16 C 1.34783 * 125.64661 * 181.02026 * 15 12 11 17 17 O 1.21582 * 119.99742 * 180.02562 * 16 15 12 18 18 N 1.34775 * 119.99947 * 0.03045 * 16 15 12 19 19 C 1.46496 * 119.99642 * 179.97438 * 18 16 15 20 20 C 1.53006 * 109.46995 * 179.97438 * 19 18 16 21 21 C 1.50698 * 109.47184 * 179.97438 * 20 19 18 22 22 H 1.08005 * 119.99819 * 0.02562 * 21 20 19 23 23 C 1.37875 * 120.00046 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00192 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99979 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.47297 * 180.02562 * 25 23 21 27 27 H 1.48503 * 109.47261 * 60.00310 * 25 23 21 28 28 H 1.48500 * 109.47454 * 300.00304 * 25 23 21 29 29 H 1.09000 * 109.47068 * 299.15957 * 1 2 3 30 30 H 1.09004 * 109.47348 * 59.15924 * 1 2 3 31 31 H 1.09006 * 109.46827 * 179.15745 * 1 2 3 32 32 H 1.08997 * 109.47425 * 301.50381 * 6 4 2 33 33 H 1.08995 * 109.47338 * 61.50816 * 6 4 2 34 34 H 1.09004 * 110.71953 * 205.97129 * 11 4 2 35 35 H 1.09001 * 110.72240 * 82.69845 * 11 4 2 36 36 H 1.09001 * 109.47474 * 300.65821 * 14 12 11 37 37 H 1.09000 * 109.47565 * 60.66517 * 14 12 11 38 38 H 1.09008 * 109.47076 * 180.65921 * 14 12 11 39 39 H 0.96998 * 120.00166 * 359.97438 * 18 16 15 40 40 H 1.09001 * 109.47001 * 59.99917 * 19 18 16 41 41 H 1.09001 * 109.47464 * 299.99358 * 19 18 16 42 42 H 1.08998 * 109.46509 * 60.00302 * 20 19 18 43 43 H 1.08993 * 109.46955 * 299.99862 * 20 19 18 44 44 H 0.97001 * 119.99934 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0216 0.0000 4 6 2.0732 -0.7776 -1.2276 5 1 3.1076 -0.5071 -1.4392 6 6 1.1879 -0.5499 -2.4545 7 6 1.7316 -1.3600 -3.6331 8 9 1.7317 -2.7197 -3.3038 9 9 0.9225 -1.1514 -4.7551 10 9 3.0383 -0.9492 -3.9180 11 6 1.9720 -2.2448 -0.7333 12 6 2.3092 -2.1278 0.7681 13 1 3.3603 -2.3658 0.9316 14 6 1.4280 -3.0806 1.5784 15 7 2.0431 -0.7384 1.1682 16 6 2.2315 -0.2260 2.4006 17 8 1.9760 0.9424 2.6187 18 7 2.7032 -1.0090 3.3910 19 6 2.9085 -0.4519 4.7302 20 6 3.4457 -1.5425 5.6594 21 6 3.6575 -0.9693 7.0369 22 1 3.4311 0.0689 7.2305 23 6 4.1392 -1.7704 8.0504 24 7 4.4143 -3.0347 7.8148 25 14 4.4010 -1.0601 9.7581 26 1 4.9225 -2.1185 10.6599 27 1 3.1095 -0.5515 10.2860 28 1 5.3796 0.0544 9.6860 29 1 -0.3633 0.5007 0.8974 30 1 -0.3634 0.5268 -0.8824 31 1 -0.3633 -1.0276 -0.0151 32 1 0.1700 -0.8700 -2.2325 33 1 1.1879 0.5094 -2.7110 34 1 2.7001 -2.8750 -1.2441 35 1 0.9619 -2.6300 -0.8729 36 1 0.3792 -2.8319 1.4163 37 1 1.6119 -4.1063 1.2586 38 1 1.6651 -2.9824 2.6378 39 1 2.9068 -1.9413 3.2170 40 1 1.9604 -0.0793 5.1180 41 1 3.6263 0.3667 4.6772 42 1 4.3937 -1.9154 5.2717 43 1 2.7276 -2.3607 5.7124 44 1 4.2780 -3.4037 6.9281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458650618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:14 Heat of formation + Delta-G solvation = -222.232483 kcal Electronic energy + Delta-G solvation = -28347.882334 eV Core-core repulsion = 23883.587187 eV Total energy + Delta-G solvation = -4464.295147 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 8.71 seconds Orbital eigenvalues (eV) -51.01719 -48.52474 -48.49136 -41.78447 -39.49758 -36.86548 -35.49567 -34.68477 -32.90970 -31.56974 -30.10600 -29.16414 -26.39477 -25.53438 -24.42254 -23.43556 -22.93961 -21.32795 -20.63538 -19.55488 -19.26498 -19.19099 -18.69512 -18.25230 -17.19954 -16.83041 -16.19962 -15.90612 -15.70275 -15.62666 -15.44515 -15.30884 -15.02133 -14.88735 -14.82384 -14.64703 -14.61015 -14.43233 -14.25957 -13.83087 -13.72402 -13.60087 -13.32279 -13.10401 -13.02421 -12.86098 -12.66128 -12.43627 -12.30044 -12.08586 -11.87256 -11.77042 -11.66517 -11.54337 -11.41929 -10.81239 -10.59329 -10.26458 -9.58651 -8.73403 -6.44363 1.49786 1.55310 1.61722 1.81753 1.88035 2.05887 2.54787 2.82855 2.91506 3.05075 3.12240 3.16827 3.47013 3.49596 3.80569 4.00557 4.10759 4.14386 4.24123 4.29128 4.31628 4.35917 4.40193 4.60479 4.64206 4.64630 4.67008 4.77675 4.85081 4.97625 5.01889 5.08134 5.11799 5.23707 5.30575 5.35271 5.36289 5.43361 5.92427 6.01622 6.12189 6.51602 6.91907 7.35462 7.48775 8.68942 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.031408 B = 0.002390 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.288962 B =11711.301667 C =12083.534624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.154 3.846 3 H 0.073 0.927 4 C -0.092 4.092 5 H 0.098 0.902 6 C -0.150 4.150 7 C 0.453 3.547 8 F -0.185 7.185 9 F -0.191 7.191 10 F -0.193 7.193 11 C -0.114 4.114 12 C 0.118 3.882 13 H 0.074 0.926 14 C -0.168 4.168 15 N -0.628 5.628 16 C 0.716 3.284 17 O -0.636 6.636 18 N -0.735 5.735 19 C 0.167 3.833 20 C 0.011 3.989 21 C -0.623 4.623 22 H 0.050 0.950 23 C -0.031 4.031 24 N -0.932 5.932 25 Si 1.118 2.882 26 H -0.281 1.281 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.039 0.961 39 H 0.403 0.597 40 H 0.043 0.957 41 H 0.042 0.958 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.374 0.248 -27.095 28.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.051 3.949 3 H 0.091 0.909 4 C -0.112 4.112 5 H 0.116 0.884 6 C -0.188 4.188 7 C 0.399 3.601 8 F -0.166 7.166 9 F -0.172 7.172 10 F -0.175 7.175 11 C -0.152 4.152 12 C 0.015 3.985 13 H 0.093 0.907 14 C -0.226 4.226 15 N -0.365 5.365 16 C 0.418 3.582 17 O -0.518 6.518 18 N -0.391 5.391 19 C 0.042 3.958 20 C -0.027 4.027 21 C -0.661 4.661 22 H 0.069 0.931 23 C -0.230 4.230 24 N -0.569 5.569 25 Si 0.938 3.062 26 H -0.206 1.206 27 H -0.195 1.195 28 H -0.195 1.195 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.084 0.916 37 H 0.112 0.888 38 H 0.058 0.942 39 H 0.240 0.760 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.017 0.722 -25.355 26.602 hybrid contribution -0.112 -0.221 -1.509 1.529 sum -8.129 0.501 -26.863 28.070 Atomic orbital electron populations 1.22218 0.93677 1.03170 1.02750 1.21702 0.94952 0.95705 0.82539 0.90863 1.22318 1.00435 0.96272 0.92134 0.88407 1.22970 1.02787 1.03332 0.89740 1.20799 0.75474 0.78985 0.84855 1.93184 1.96277 1.34943 1.92232 1.93187 1.73233 1.94758 1.56027 1.93185 1.39518 1.90203 1.94586 1.22960 1.04929 0.95938 0.91359 1.21884 0.99625 0.80534 0.96455 0.90748 1.22322 1.00446 1.00615 0.99228 1.47779 1.68639 1.12522 1.07585 1.15663 0.78195 0.84085 0.80266 1.90853 1.60760 1.17487 1.82741 1.45463 1.69790 1.14117 1.09766 1.20916 0.98837 0.96291 0.79718 1.19267 0.94859 0.94201 0.94372 1.22295 1.48477 0.98886 0.96450 0.93131 1.27382 0.92690 0.94544 1.08347 1.70922 1.46946 1.14408 1.24598 0.82923 0.77716 0.75108 0.70409 1.20593 1.19485 1.19535 0.94737 0.88212 0.90894 0.84549 0.84807 0.88177 0.88051 0.91578 0.88780 0.94218 0.75959 0.93854 0.93929 0.97826 0.97730 0.93218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 8.35 71.98 0.60 -1.89 16 2 C 0.15 2.91 3.17 45.55 0.14 3.06 16 3 H 0.07 1.64 8.03 -2.39 -0.02 1.62 16 4 C -0.09 -1.08 2.82 -9.32 -0.03 -1.11 16 5 H 0.10 1.25 7.81 -2.39 -0.02 1.23 16 6 C -0.15 -1.01 3.91 30.59 0.12 -0.89 16 7 C 0.45 4.86 3.16 71.98 0.23 5.08 16 8 F -0.18 -2.23 14.70 44.97 0.66 -1.57 16 9 F -0.19 -2.40 17.32 44.97 0.78 -1.63 16 10 F -0.19 -2.72 16.80 44.97 0.76 -1.97 16 11 C -0.11 -1.33 3.97 31.78 0.13 -1.20 16 12 C 0.12 2.18 3.08 45.34 0.14 2.32 16 13 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 14 C -0.17 -3.08 9.02 71.98 0.65 -2.44 16 15 N -0.63 -16.00 2.71 -781.87 -2.12 -18.12 16 16 C 0.72 26.09 8.28 179.05 1.48 27.57 16 17 O -0.64 -28.40 16.60 -3.97 -0.07 -28.47 16 18 N -0.73 -27.45 5.10 -478.53 -2.44 -29.89 16 19 C 0.17 7.57 5.61 86.38 0.48 8.06 16 20 C 0.01 0.54 4.40 29.85 0.13 0.67 16 21 C -0.62 -35.71 9.11 25.60 0.23 -35.47 16 22 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 23 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 24 N -0.93 -56.54 13.65 21.45 0.29 -56.24 16 25 Si 1.12 50.04 29.90 68.60 2.05 52.09 16 26 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.10 0.87 6.90 -2.39 -0.02 0.86 16 31 H 0.07 0.95 7.37 -2.38 -0.02 0.93 16 32 H 0.14 0.46 6.62 -2.39 -0.02 0.44 16 33 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.10 1.02 7.33 -2.38 -0.02 1.00 16 35 H 0.10 0.89 7.26 -2.39 -0.02 0.88 16 36 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.04 0.94 5.75 -2.38 -0.01 0.93 16 39 H 0.40 13.26 5.57 -92.71 -0.52 12.74 16 40 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.00 0.18 8.01 -2.39 -0.02 0.17 16 43 H 0.00 0.23 8.01 -2.39 -0.02 0.21 16 44 H 0.26 15.63 7.22 -92.71 -0.67 14.96 16 Total: -1.00 -73.65 359.05 5.29 -68.36 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: 0.60 Total: 15.02 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 4.77 Total: 2.42 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.27 Total: -104.26 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.07 Total: -28.47 kcal Atomic # 9 Polarization: -7.36 SS G_CDS: 2.20 Total: -5.16 kcal Atomic # 14 Polarization: 50.04 SS G_CDS: 2.05 Total: 52.09 kcal Total: -73.65 5.29 -68.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458650618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.869 kcal (2) G-P(sol) polarization free energy of solvation -73.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.71 seconds