Wall clock time and date at job start Tue Mar 31 2020 15:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 O 1.42897 * 109.46960 * 299.99827 * 3 2 1 5 5 C 1.52998 * 109.47234 * 239.99729 * 2 1 3 6 6 O 1.42900 * 109.47217 * 184.99999 * 5 2 1 7 7 N 1.46507 * 109.47065 * 119.99505 * 2 1 3 8 8 C 1.34775 * 119.99725 * 60.00445 * 7 2 1 9 9 O 1.21596 * 120.00015 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00181 * 179.97438 * 8 7 2 11 11 C 1.46500 * 120.00556 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.46624 * 324.99750 * 11 10 8 13 13 C 1.52996 * 109.47466 * 205.00158 * 11 10 8 14 14 C 1.50702 * 109.47159 * 64.99479 * 13 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.50700 * 109.47471 * 84.99708 * 11 10 8 23 23 C 1.38233 * 119.99377 * 39.72808 * 22 11 10 24 24 C 1.38237 * 119.99600 * 179.78842 * 23 22 11 25 25 C 1.38241 * 119.99990 * 0.44354 * 24 23 22 26 26 C 1.38237 * 119.99716 * 359.81238 * 25 24 23 27 27 C 1.38228 * 120.00326 * 220.00479 * 22 11 10 28 28 H 1.09004 * 109.46955 * 299.99891 * 1 2 3 29 29 H 1.08995 * 109.47140 * 60.00127 * 1 2 3 30 30 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47229 * 59.99640 * 3 2 1 32 32 H 1.08996 * 109.47653 * 179.97438 * 3 2 1 33 33 H 0.96695 * 114.00382 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.47164 * 304.99983 * 5 2 1 35 35 H 1.08994 * 109.46949 * 65.00119 * 5 2 1 36 36 H 0.96703 * 114.00429 * 179.97438 * 6 5 2 37 37 H 0.96998 * 120.00038 * 240.00282 * 7 2 1 38 38 H 0.97002 * 120.00072 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.47066 * 304.99682 * 13 11 10 40 40 H 1.08994 * 109.47405 * 184.99512 * 13 11 10 41 41 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.00514 * 359.97438 * 23 22 11 43 43 H 1.08001 * 120.00058 * 180.28006 * 24 23 22 44 44 H 1.07995 * 120.00194 * 179.83256 * 25 24 23 45 45 H 1.08001 * 119.99824 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.99906 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1668 5 6 2.0400 -0.7213 -1.2492 6 8 3.4642 -0.8238 -1.1919 7 7 2.0183 -0.6905 1.1963 8 6 1.6928 -1.9809 1.4096 9 8 0.9934 -2.5717 0.6094 10 7 2.1424 -2.6163 2.5097 11 6 1.7881 -4.0188 2.7420 12 1 0.7772 -4.2031 2.3780 13 6 1.8534 -4.3200 4.2406 14 6 0.7999 -3.5181 4.9605 15 1 0.1486 -2.8598 4.4047 16 6 0.6634 -3.6296 6.3280 17 7 1.4562 -4.4315 7.0047 18 14 -0.6474 -2.6414 7.2194 19 1 -1.4024 -1.8217 6.2379 20 1 -1.5798 -3.5671 7.9117 21 1 -0.0027 -1.7503 8.2172 22 6 2.7566 -4.9098 2.0078 23 6 4.1007 -4.5890 1.9731 24 6 4.9899 -5.4087 1.3034 25 6 4.5335 -6.5443 0.6606 26 6 3.1885 -6.8622 0.6909 27 6 2.3001 -6.0448 1.3643 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.8487 3.0377 -1.2328 34 1 1.6054 -1.7198 -1.2951 35 1 1.7517 -0.1584 -2.1369 36 1 3.8573 -1.2717 -1.9535 37 1 2.5760 -0.2191 1.8348 38 1 2.7006 -2.1451 3.1479 39 1 2.8384 -4.0516 4.6225 40 1 1.6769 -5.3828 4.4056 41 1 1.3604 -4.5096 7.9669 42 1 4.4567 -3.6996 2.4718 43 1 6.0407 -5.1605 1.2801 44 1 5.2276 -7.1832 0.1351 45 1 2.8319 -7.7496 0.1891 46 1 1.2493 -6.2933 1.3880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567593849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:02 Heat of formation + Delta-G solvation = -106.866704 kcal Electronic energy + Delta-G solvation = -28348.507589 eV Core-core repulsion = 24431.071818 eV Total energy + Delta-G solvation = -3917.435771 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 7.22 seconds Orbital eigenvalues (eV) -40.13825 -38.91162 -37.73248 -36.19904 -35.27892 -34.31417 -32.74913 -31.64247 -30.45089 -29.86748 -28.57156 -26.58398 -25.78928 -24.83154 -22.24461 -21.94000 -21.38854 -19.72200 -19.44958 -18.01176 -17.74572 -17.11092 -16.78595 -16.12070 -15.64848 -15.27380 -15.00138 -14.88945 -14.53118 -14.47891 -14.25321 -13.76923 -13.44558 -13.24867 -12.98122 -12.80477 -12.74630 -12.47283 -12.24788 -12.07466 -11.88923 -11.69102 -11.47842 -11.09993 -10.88683 -10.73047 -10.66393 -10.55817 -10.38889 -10.24518 -9.98095 -9.73177 -9.28153 -9.23875 -8.80039 -8.48469 -8.42841 -8.23080 -8.10638 -6.07320 -4.10058 1.84705 1.87377 3.00369 3.26576 3.35296 3.39804 3.77828 4.13558 4.28354 4.36748 4.41429 4.65010 4.84578 4.98635 5.17904 5.29583 5.32088 5.33957 5.43583 5.47568 5.60781 5.63244 5.73872 5.88653 5.93759 5.98058 6.00471 6.08241 6.22355 6.42133 6.47824 6.49684 6.64542 6.83970 6.91170 6.91791 7.04194 7.18520 7.34104 7.41823 7.47514 7.55857 7.69914 7.72995 7.90284 8.28861 8.60674 8.96303 9.19417 9.54685 11.03316 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.005164 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.804397 B = 5420.925011 C = 8063.568838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.206 3.794 3 C 0.079 3.921 4 O -0.565 6.565 5 C 0.068 3.932 6 O -0.569 6.569 7 N -0.737 5.737 8 C 0.714 3.286 9 O -0.596 6.596 10 N -0.716 5.716 11 C 0.203 3.797 12 H 0.086 0.914 13 C 0.023 3.977 14 C -0.516 4.516 15 H 0.058 0.942 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.285 1.285 22 C -0.069 4.069 23 C -0.104 4.104 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.124 4.124 27 C -0.108 4.108 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.381 0.619 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.374 0.626 37 H 0.393 0.607 38 H 0.396 0.604 39 H 0.024 0.976 40 H 0.034 0.966 41 H 0.260 0.740 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.115 0.885 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.577 7.960 -14.776 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.118 3.882 3 C 0.000 4.000 4 O -0.369 6.369 5 C -0.011 4.011 6 O -0.374 6.374 7 N -0.394 5.394 8 C 0.414 3.586 9 O -0.476 6.476 10 N -0.368 5.368 11 C 0.098 3.902 12 H 0.104 0.896 13 C -0.015 4.015 14 C -0.554 4.554 15 H 0.077 0.923 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.071 4.071 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.142 4.142 27 C -0.127 4.127 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.228 0.772 34 H 0.089 0.911 35 H 0.070 0.930 36 H 0.220 0.780 37 H 0.226 0.774 38 H 0.229 0.771 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.133 0.867 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.133 0.867 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 4.572 7.080 -14.862 17.086 hybrid contribution 0.259 1.206 0.900 1.527 sum 4.831 8.286 -13.962 16.940 Atomic orbital electron populations 1.22146 0.93122 1.04562 1.02018 1.19856 0.94419 0.89586 0.84323 1.22169 0.98175 0.91923 0.87726 1.86404 1.77473 1.29048 1.44015 1.22604 0.81040 1.00937 0.96520 1.86399 1.20389 1.82058 1.48515 1.44857 1.57400 1.11560 1.25534 1.15810 0.79974 0.80522 0.82253 1.90793 1.43201 1.66479 1.47111 1.45119 1.55320 1.13166 1.23189 1.20087 0.95600 0.76643 0.97822 0.89621 1.19404 0.97977 0.98116 0.85961 1.21179 1.17098 1.25164 0.91991 0.92328 1.24990 0.96048 0.95443 0.97731 1.69974 1.38208 1.37430 1.07544 0.86554 0.81834 0.80034 0.79687 1.19781 1.21016 1.21108 1.20600 0.94915 0.95660 0.95893 1.20880 0.92944 0.99329 0.99038 1.21025 0.99044 0.95486 0.98800 1.20970 0.95617 0.97732 1.01114 1.21020 0.93566 0.99503 1.00135 1.21002 0.99665 0.94835 0.97165 0.92345 0.91457 0.89686 0.93150 0.92348 0.77194 0.91142 0.93011 0.78033 0.77410 0.77071 0.95796 0.94739 0.92983 0.86712 0.86898 0.86986 0.86743 0.86273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 8.26 37.16 0.31 -1.95 16 2 C 0.21 2.75 0.67 -131.82 -0.09 2.67 16 3 C 0.08 0.82 5.92 37.16 0.22 1.04 16 4 O -0.56 -5.41 12.22 -35.23 -0.43 -5.84 16 5 C 0.07 0.93 5.56 37.16 0.21 1.14 16 6 O -0.57 -7.49 12.96 -35.23 -0.46 -7.94 16 7 N -0.74 -10.69 4.88 -52.41 -0.26 -10.94 16 8 C 0.71 12.96 7.94 -86.92 -0.69 12.27 16 9 O -0.60 -12.45 12.27 5.28 0.06 -12.39 16 10 N -0.72 -13.15 4.02 -59.81 -0.24 -13.39 16 11 C 0.20 4.19 2.12 -69.08 -0.15 4.05 16 12 H 0.09 1.94 7.44 -51.92 -0.39 1.56 16 13 C 0.02 0.55 4.50 -27.88 -0.13 0.42 16 14 C -0.52 -13.67 8.84 -34.44 -0.30 -13.98 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -25.64 13.29 55.43 0.74 -24.90 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 C -0.07 -1.31 4.91 -104.63 -0.51 -1.83 16 23 C -0.10 -1.80 9.33 -39.58 -0.37 -2.17 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.32 16 25 C -0.14 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 27 C -0.11 -1.92 9.67 -39.59 -0.38 -2.31 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.86 7.68 -51.93 -0.40 0.46 16 30 H 0.08 1.43 6.16 -51.93 -0.32 1.11 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 33 H 0.38 1.85 9.12 45.56 0.42 2.26 16 34 H 0.07 1.16 6.32 -51.93 -0.33 0.83 16 35 H 0.05 0.66 7.54 -51.93 -0.39 0.27 16 36 H 0.37 3.55 9.12 45.56 0.42 3.96 16 37 H 0.39 4.82 8.49 -40.82 -0.35 4.48 16 38 H 0.40 6.72 8.62 -40.82 -0.35 6.37 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.11 1.90 7.71 -52.49 -0.40 1.50 16 43 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 45 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.12 2.04 8.04 -52.48 -0.42 1.61 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -33.32 380.64 -8.47 -41.79 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: -5.43 Total: 17.95 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -3.18 Total: -6.14 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: 0.24 Total: -49.24 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.82 Total: -26.17 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.32 -8.47 -41.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567593849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.081 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.22 seconds