Wall clock time and date at job start Tue Mar 31 2020 15:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47298 * 2 1 4 4 O 1.42897 * 109.46960 * 299.99827 * 3 2 1 5 5 C 1.52998 * 109.47234 * 239.99729 * 2 1 3 6 6 O 1.42900 * 109.47217 * 184.99999 * 5 2 1 7 7 N 1.46507 * 109.47065 * 119.99505 * 2 1 3 8 8 C 1.34775 * 119.99725 * 60.00445 * 7 2 1 9 9 O 1.21596 * 120.00015 * 359.97438 * 8 7 2 10 10 N 1.34771 * 120.00181 * 179.97438 * 8 7 2 11 11 C 1.46500 * 120.00556 * 179.97438 * 10 8 7 12 12 H 1.09009 * 109.46624 * 324.99750 * 11 10 8 13 13 C 1.52996 * 109.47466 * 205.00158 * 11 10 8 14 14 C 1.50702 * 109.47159 * 64.99479 * 13 11 10 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 11 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 13 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 13 19 19 H 1.48496 * 109.47341 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46983 * 120.00379 * 18 16 14 21 21 H 1.48503 * 109.47491 * 240.00192 * 18 16 14 22 22 C 1.50700 * 109.47471 * 84.99708 * 11 10 8 23 23 C 1.38233 * 119.99377 * 39.72808 * 22 11 10 24 24 C 1.38237 * 119.99600 * 179.78842 * 23 22 11 25 25 C 1.38241 * 119.99990 * 0.44354 * 24 23 22 26 26 C 1.38237 * 119.99716 * 359.81238 * 25 24 23 27 27 C 1.38228 * 120.00326 * 220.00479 * 22 11 10 28 28 H 1.09004 * 109.46955 * 299.99891 * 1 2 3 29 29 H 1.08995 * 109.47140 * 60.00127 * 1 2 3 30 30 H 1.09004 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47229 * 59.99640 * 3 2 1 32 32 H 1.08996 * 109.47653 * 179.97438 * 3 2 1 33 33 H 0.96695 * 114.00382 * 179.97438 * 4 3 2 34 34 H 1.08995 * 109.47164 * 304.99983 * 5 2 1 35 35 H 1.08994 * 109.46949 * 65.00119 * 5 2 1 36 36 H 0.96703 * 114.00429 * 179.97438 * 6 5 2 37 37 H 0.96998 * 120.00038 * 240.00282 * 7 2 1 38 38 H 0.97002 * 120.00072 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.47066 * 304.99682 * 13 11 10 40 40 H 1.08994 * 109.47405 * 184.99512 * 13 11 10 41 41 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 42 42 H 1.07995 * 120.00514 * 359.97438 * 23 22 11 43 43 H 1.08001 * 120.00058 * 180.28006 * 24 23 22 44 44 H 1.07995 * 120.00194 * 179.83256 * 25 24 23 45 45 H 1.08001 * 119.99824 * 180.02562 * 26 25 24 46 46 H 1.08005 * 119.99906 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1668 5 6 2.0400 -0.7213 -1.2492 6 8 3.4642 -0.8238 -1.1919 7 7 2.0183 -0.6905 1.1963 8 6 1.6928 -1.9809 1.4096 9 8 0.9934 -2.5717 0.6094 10 7 2.1424 -2.6163 2.5097 11 6 1.7881 -4.0188 2.7420 12 1 0.7772 -4.2031 2.3780 13 6 1.8534 -4.3200 4.2406 14 6 0.7999 -3.5181 4.9605 15 1 0.1486 -2.8598 4.4047 16 6 0.6634 -3.6296 6.3280 17 7 1.4562 -4.4315 7.0047 18 14 -0.6474 -2.6414 7.2194 19 1 -1.4024 -1.8217 6.2379 20 1 -1.5798 -3.5671 7.9117 21 1 -0.0027 -1.7503 8.2172 22 6 2.7566 -4.9098 2.0078 23 6 4.1007 -4.5890 1.9731 24 6 4.9899 -5.4087 1.3034 25 6 4.5335 -6.5443 0.6606 26 6 3.1885 -6.8622 0.6909 27 6 2.3001 -6.0448 1.3643 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.8487 3.0377 -1.2328 34 1 1.6054 -1.7198 -1.2951 35 1 1.7517 -0.1584 -2.1369 36 1 3.8573 -1.2717 -1.9535 37 1 2.5760 -0.2191 1.8348 38 1 2.7006 -2.1451 3.1479 39 1 2.8384 -4.0516 4.6225 40 1 1.6769 -5.3828 4.4056 41 1 1.3604 -4.5096 7.9669 42 1 4.4567 -3.6996 2.4718 43 1 6.0407 -5.1605 1.2801 44 1 5.2276 -7.1832 0.1351 45 1 2.8319 -7.7496 0.1891 46 1 1.2493 -6.2933 1.3880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567593849.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:51 Heat of formation + Delta-G solvation = -133.678394 kcal Electronic energy + Delta-G solvation = -28349.670231 eV Core-core repulsion = 24431.071818 eV Total energy + Delta-G solvation = -3918.598413 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 6.94 seconds Orbital eigenvalues (eV) -41.48297 -40.17717 -38.86650 -37.11627 -36.75290 -35.57508 -34.71195 -33.04678 -31.71546 -31.13069 -30.36711 -27.58033 -26.82794 -26.61922 -23.77962 -23.42939 -22.68464 -21.21570 -20.66433 -19.37903 -18.64107 -18.56865 -18.10491 -17.65579 -16.97801 -16.50792 -16.43383 -16.18875 -16.08156 -15.64509 -15.54896 -15.00464 -14.82935 -14.53541 -14.29681 -14.16462 -14.07546 -13.79534 -13.62910 -13.38244 -13.33655 -13.08984 -12.89203 -12.76111 -12.60508 -12.45259 -12.11424 -11.84967 -11.69562 -11.56563 -11.31765 -11.22356 -10.94342 -10.63447 -10.53494 -10.16334 -9.74429 -9.67005 -9.47262 -8.19149 -6.28648 0.54633 0.59329 1.38030 1.40930 1.52361 1.74702 2.33763 2.40657 2.97143 3.13442 3.21754 3.38090 3.50916 3.87684 4.02304 4.06644 4.07872 4.23353 4.29187 4.34499 4.46876 4.54899 4.57991 4.68486 4.70760 4.75207 4.79521 4.82379 4.84934 4.98837 5.16011 5.22794 5.28368 5.35910 5.45861 5.64209 5.66056 5.66129 5.68449 5.80127 5.94612 6.16029 6.19176 6.23892 6.82179 6.84064 6.89521 7.24319 7.40303 7.76775 8.91845 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.005164 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.804397 B = 5420.925011 C = 8063.568838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.195 3.805 3 C 0.091 3.909 4 O -0.576 6.576 5 C 0.076 3.924 6 O -0.576 6.576 7 N -0.723 5.723 8 C 0.711 3.289 9 O -0.626 6.626 10 N -0.714 5.714 11 C 0.221 3.779 12 H 0.056 0.944 13 C 0.038 3.962 14 C -0.524 4.524 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.957 3.043 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.275 1.275 22 C -0.095 4.095 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.130 4.130 26 C -0.124 4.124 27 C -0.133 4.133 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.403 0.597 34 H 0.037 0.963 35 H 0.064 0.936 36 H 0.389 0.611 37 H 0.405 0.595 38 H 0.402 0.598 39 H 0.011 0.989 40 H 0.004 0.996 41 H 0.263 0.737 42 H 0.116 0.884 43 H 0.144 0.856 44 H 0.150 0.850 45 H 0.143 0.857 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.898 9.286 -15.756 19.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.108 3.892 3 C 0.012 3.988 4 O -0.385 6.385 5 C -0.003 4.003 6 O -0.383 6.383 7 N -0.380 5.380 8 C 0.411 3.589 9 O -0.507 6.507 10 N -0.366 5.366 11 C 0.116 3.884 12 H 0.074 0.926 13 C 0.000 4.000 14 C -0.562 4.562 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.782 3.218 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.201 1.201 22 C -0.097 4.097 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.151 4.151 28 H 0.079 0.921 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.254 0.746 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.238 0.762 37 H 0.241 0.759 38 H 0.237 0.763 39 H 0.030 0.970 40 H 0.022 0.978 41 H 0.072 0.928 42 H 0.134 0.866 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 5.922 8.459 -15.857 18.922 hybrid contribution -0.115 0.759 1.108 1.348 sum 5.806 9.218 -14.748 18.336 Atomic orbital electron populations 1.22053 0.93858 1.02520 1.02764 1.20074 0.93995 0.91627 0.83479 1.21965 0.98273 0.89823 0.88748 1.86349 1.77698 1.30897 1.43519 1.22419 0.81315 0.99286 0.97246 1.86354 1.19838 1.82313 1.49802 1.44728 1.56843 1.10205 1.26175 1.15917 0.79716 0.81507 0.81712 1.90784 1.44452 1.67512 1.47982 1.44930 1.55530 1.12488 1.23686 1.19533 0.94990 0.78468 0.95459 0.92610 1.19140 0.96558 0.95839 0.88450 1.21402 1.17346 1.25069 0.92394 0.92970 1.25767 0.98048 0.96423 0.98555 1.70082 1.39817 1.38834 1.07914 0.85527 0.79159 0.78625 0.78458 1.19478 1.20834 1.20072 1.20484 0.95426 0.96251 0.97494 1.21011 0.92582 1.00141 0.99863 1.21408 1.00198 0.95084 0.97594 1.21439 0.95746 0.97549 1.00010 1.21366 0.93826 0.99781 0.99232 1.21156 1.00112 0.95430 0.98443 0.92071 0.90158 0.93030 0.91594 0.91778 0.74601 0.94460 0.91776 0.76242 0.75930 0.76349 0.97047 0.97772 0.92772 0.86564 0.83847 0.83194 0.83939 0.87046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.29 8.26 71.98 0.59 -3.70 16 2 C 0.20 5.05 0.67 3.60 0.00 5.05 16 3 C 0.09 1.66 5.92 71.98 0.43 2.08 16 4 O -0.58 -9.41 12.22 -148.98 -1.82 -11.23 16 5 C 0.08 2.06 5.56 71.98 0.40 2.46 16 6 O -0.58 -14.36 12.96 -148.98 -1.93 -16.29 16 7 N -0.72 -20.68 4.88 -437.99 -2.14 -22.81 16 8 C 0.71 26.52 7.94 179.06 1.42 27.94 16 9 O -0.63 -27.36 12.27 -4.02 -0.05 -27.41 16 10 N -0.71 -27.19 4.02 -461.40 -1.86 -29.04 16 11 C 0.22 9.66 2.12 44.24 0.09 9.76 16 12 H 0.06 2.73 7.44 -2.38 -0.02 2.71 16 13 C 0.04 1.91 4.50 29.85 0.13 2.05 16 14 C -0.52 -28.67 8.84 25.60 0.23 -28.44 16 15 H 0.05 2.87 7.74 -2.91 -0.02 2.85 16 16 C 0.01 0.58 5.46 84.66 0.46 1.05 16 17 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 18 Si 0.96 43.70 29.54 68.60 2.03 45.72 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.10 -3.74 4.91 -19.87 -0.10 -3.84 16 23 C -0.12 -4.08 9.33 22.27 0.21 -3.87 16 24 C -0.13 -3.56 10.05 22.27 0.22 -3.34 16 25 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 26 C -0.12 -3.67 10.05 22.27 0.22 -3.44 16 27 C -0.13 -4.87 9.67 22.27 0.22 -4.66 16 28 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.08 1.99 7.68 -2.39 -0.02 1.97 16 30 H 0.05 1.80 6.16 -2.38 -0.01 1.78 16 31 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.06 1.13 7.82 -2.39 -0.02 1.11 16 33 H 0.40 2.60 9.12 -74.06 -0.68 1.93 16 34 H 0.04 1.26 6.32 -2.39 -0.02 1.25 16 35 H 0.06 1.56 7.54 -2.39 -0.02 1.54 16 36 H 0.39 6.82 9.12 -74.06 -0.68 6.15 16 37 H 0.41 9.49 8.49 -92.71 -0.79 8.70 16 38 H 0.40 14.02 8.62 -92.71 -0.80 13.22 16 39 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 42 H 0.12 3.87 7.71 -2.91 -0.02 3.84 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 44 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 45 H 0.14 3.32 8.06 -2.91 -0.02 3.29 16 46 H 0.11 4.09 8.04 -2.91 -0.02 4.07 16 Total: -1.00 -73.85 380.64 -2.63 -76.48 By element: Atomic # 1 Polarization: 44.58 SS G_CDS: -1.90 Total: 42.68 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 4.76 Total: -4.11 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.71 Total: -105.84 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -3.80 Total: -54.93 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -73.85 -2.63 -76.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567593849.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.196 kcal (2) G-P(sol) polarization free energy of solvation -73.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.94 seconds