Wall clock time and date at job start Tue Mar 31 2020 16:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35892 * 117.00438 * 2 1 4 4 C 1.38761 * 120.05599 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.94605 * 180.02562 * 4 3 2 6 6 N 1.48005 * 119.96906 * 180.02562 * 5 4 3 7 7 O 1.21794 * 120.00124 * 359.97438 * 6 5 4 8 8 O 1.21803 * 119.99482 * 180.02562 * 6 5 4 9 9 C 1.38292 * 120.05515 * 0.02562 * 5 4 3 10 10 C 1.38244 * 120.10909 * 359.72222 * 9 5 4 11 11 C 1.38170 * 120.05816 * 0.55207 * 10 9 5 12 12 C 1.50693 * 120.02818 * 179.72328 * 11 10 9 13 13 H 1.09000 * 109.47305 * 144.73030 * 12 11 10 14 14 C 1.53003 * 109.46915 * 264.72666 * 12 11 10 15 15 N 1.46901 * 109.47182 * 24.72452 * 12 11 10 16 16 C 1.46905 * 110.99870 * 155.00014 * 15 12 11 17 17 C 1.52993 * 109.47039 * 180.02562 * 16 15 12 18 18 C 1.53001 * 109.47206 * 299.99787 * 17 16 15 19 19 C 1.53001 * 109.47323 * 60.00045 * 17 16 15 20 20 C 1.50698 * 109.47393 * 180.02562 * 17 16 15 21 21 H 1.08010 * 119.99765 * 359.97438 * 20 17 16 22 22 C 1.37872 * 120.00736 * 179.97438 * 20 17 16 23 23 N 1.31523 * 119.99548 * 359.97438 * 22 20 17 24 24 Si 1.86793 * 120.00627 * 179.97438 * 22 20 17 25 25 H 1.48498 * 109.47202 * 90.00137 * 24 22 20 26 26 H 1.48501 * 109.47603 * 210.00337 * 24 22 20 27 27 H 1.48506 * 109.47086 * 329.99976 * 24 22 20 28 28 H 1.09002 * 109.47036 * 300.00039 * 1 2 3 29 29 H 1.09001 * 109.46669 * 59.99811 * 1 2 3 30 30 H 1.08997 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.02513 * 0.02562 * 4 3 2 32 32 H 1.07990 * 119.94204 * 180.02562 * 9 5 4 33 33 H 1.07995 * 119.97113 * 180.27719 * 10 9 5 34 34 H 1.08996 * 109.47234 * 60.00392 * 14 12 11 35 35 H 1.09007 * 109.47106 * 180.02562 * 14 12 11 36 36 H 1.08993 * 109.47190 * 299.99987 * 14 12 11 37 37 H 1.00901 * 111.00067 * 278.95190 * 15 12 11 38 38 H 1.09001 * 109.46798 * 300.00327 * 16 15 12 39 39 H 1.08998 * 109.46961 * 60.00043 * 16 15 12 40 40 H 1.08999 * 109.47049 * 60.00315 * 18 17 16 41 41 H 1.09005 * 109.47151 * 179.97438 * 18 17 16 42 42 H 1.08998 * 109.47171 * 300.00432 * 18 17 16 43 43 H 1.08991 * 109.46963 * 60.00286 * 19 17 16 44 44 H 1.09005 * 109.47384 * 179.97438 * 19 17 16 45 45 H 1.08999 * 109.47105 * 299.99791 * 19 17 16 46 46 H 0.97002 * 119.99722 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2916 2.3753 -0.0005 5 6 1.9211 3.6047 -0.0011 6 7 1.1168 4.8472 -0.0011 7 8 -0.0996 4.7852 -0.0011 8 8 1.6714 5.9316 -0.0020 9 6 3.3022 3.6757 -0.0016 10 6 4.0561 2.5169 0.0042 11 6 3.4312 1.2846 -0.0010 12 6 4.2537 0.0220 -0.0010 13 1 3.7469 -0.7418 0.5888 14 6 4.4262 -0.4743 -1.4380 15 7 5.5730 0.2970 0.5838 16 6 6.1657 -0.9250 1.1438 17 6 7.5353 -0.5993 1.7427 18 6 8.4505 -0.0431 0.6501 19 6 7.3726 0.4429 2.8511 20 6 8.1436 -1.8529 2.3167 21 1 7.6067 -2.7884 2.2604 22 6 9.3854 -1.8058 2.9138 23 7 10.0394 -0.6667 2.9820 24 14 10.1391 -3.3595 3.6259 25 1 10.9423 -4.0438 2.5811 26 1 11.0157 -3.0047 4.7709 27 1 9.0585 -4.2652 4.0920 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2129 2.3204 -0.0005 32 1 3.7924 4.6379 -0.0016 33 1 5.1345 2.5749 0.0083 34 1 4.9331 0.2894 -2.0277 35 1 5.0208 -1.3879 -1.4379 36 1 3.4474 -0.6783 -1.8718 37 1 6.1886 0.7191 -0.0952 38 1 5.5138 -1.3210 1.9225 39 1 6.2812 -1.6676 0.3543 40 1 8.0108 0.8636 0.2345 41 1 9.4262 0.1894 1.0769 42 1 8.5665 -0.7855 -0.1395 43 1 6.7207 0.0466 3.6295 44 1 8.3483 0.6746 3.2781 45 1 6.9329 1.3495 2.4355 46 1 10.9133 -0.6336 3.4018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595051190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:18 Heat of formation + Delta-G solvation = -17.662829 kcal Electronic energy + Delta-G solvation = -27680.195771 eV Core-core repulsion = 23766.628171 eV Total energy + Delta-G solvation = -3913.567600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.31372 -40.75404 -38.20509 -37.25047 -36.67317 -35.10854 -32.23967 -30.97074 -30.71224 -28.77846 -27.98304 -26.50249 -25.65068 -25.29330 -24.17086 -23.26753 -22.52335 -20.84813 -19.82953 -18.87222 -18.56872 -17.65567 -17.21564 -16.53064 -16.49194 -16.15214 -15.74791 -15.04618 -14.62466 -14.42014 -14.34991 -13.85833 -13.58860 -13.27893 -12.87392 -12.71393 -12.43816 -12.22832 -12.18711 -11.99252 -11.75393 -11.67534 -11.61374 -11.32152 -11.26821 -11.22834 -11.05154 -10.99705 -10.71769 -10.63766 -10.26572 -10.11934 -9.54793 -9.47568 -9.17788 -8.78720 -8.69767 -8.35103 -7.92381 -5.97225 -4.07764 -0.30905 0.82366 1.24354 1.26817 2.78571 3.10515 3.27094 3.34776 3.37281 4.09107 4.21883 4.38502 4.42421 4.58802 4.66333 4.77072 4.80475 4.93026 5.12545 5.15827 5.18153 5.28717 5.34274 5.41712 5.54352 5.71620 5.84343 5.97607 6.07853 6.10664 6.22432 6.27844 6.33346 6.62293 6.80346 6.81738 6.96820 7.08230 7.27694 7.35914 7.52448 7.57438 7.68496 7.75306 7.77826 8.13461 8.26775 8.48620 8.93463 9.57738 11.03315 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002845 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.990458 B = 9839.153068 C =10639.045480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.300 6.300 3 C 0.131 3.869 4 C -0.154 4.154 5 C -0.018 4.018 6 N 0.032 4.968 7 O -0.171 6.171 8 O -0.159 6.159 9 C -0.087 4.087 10 C -0.059 4.059 11 C -0.034 4.034 12 C 0.119 3.881 13 H 0.097 0.903 14 C -0.173 4.173 15 N -0.681 5.681 16 C 0.077 3.923 17 C 0.070 3.930 18 C -0.132 4.132 19 C -0.119 4.119 20 C -0.508 4.508 21 H 0.052 0.948 22 C 0.066 3.934 23 N -0.884 5.884 24 Si 0.888 3.112 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.162 0.838 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.340 0.660 38 H 0.058 0.942 39 H 0.018 0.982 40 H 0.009 0.991 41 H 0.084 0.916 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.019 0.981 46 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 4.176 -8.657 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.213 6.213 3 C 0.084 3.916 4 C -0.174 4.174 5 C -0.101 4.101 6 N 0.550 4.450 7 O -0.385 6.385 8 O -0.376 6.376 9 C -0.106 4.106 10 C -0.077 4.077 11 C -0.036 4.036 12 C 0.008 3.992 13 H 0.115 0.885 14 C -0.232 4.232 15 N -0.313 5.313 16 C -0.051 4.051 17 C 0.069 3.931 18 C -0.190 4.190 19 C -0.177 4.177 20 C -0.547 4.547 21 H 0.070 0.930 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.717 3.283 25 H -0.209 1.209 26 H -0.213 1.213 27 H -0.201 1.201 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.125 0.875 31 H 0.172 0.828 32 H 0.171 0.829 33 H 0.179 0.821 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.160 0.840 38 H 0.076 0.924 39 H 0.036 0.964 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.093 0.907 45 H 0.038 0.962 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.849 3.642 -7.967 18.109 hybrid contribution 0.110 -0.874 -0.347 0.946 sum -15.739 2.769 -8.314 18.014 Atomic orbital electron populations 1.23200 0.77794 1.04700 1.01702 1.86176 1.21735 1.25084 1.88304 1.18528 0.91445 0.83968 0.97687 1.20869 1.01887 0.89844 1.04814 1.20731 0.91531 0.83645 1.14178 1.43631 1.01298 1.02805 0.97256 1.94509 0.96018 1.94089 1.53862 1.94539 1.74206 1.15580 1.53234 1.21055 0.90261 1.01485 0.97804 1.20998 1.01671 0.88991 0.96084 1.19901 0.90014 0.97222 0.96450 1.20388 0.91730 0.92204 0.94868 0.88515 1.22425 1.02325 1.01984 0.96490 1.60739 1.02684 1.29746 1.38104 1.22198 0.98062 0.88076 0.96775 1.18088 0.88020 0.94699 0.92279 1.21845 1.03540 0.96042 0.97598 1.21644 1.01318 0.96585 0.98155 1.21091 1.02273 0.94122 1.37210 0.92989 1.24876 0.97012 0.95797 0.95830 1.69827 1.13741 1.24276 1.44435 0.86660 0.79196 0.83732 0.78756 1.20859 1.21280 1.20063 0.92214 0.92314 0.87519 0.82841 0.82852 0.82097 0.92406 0.91443 0.92160 0.84036 0.92382 0.96369 0.97169 0.89756 0.96151 0.96315 0.90708 0.96187 0.93139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 101.05 0.99 1.13 16 2 O -0.30 -3.06 9.63 -19.40 -0.19 -3.25 16 3 C 0.13 1.45 6.66 -39.21 -0.26 1.19 16 4 C -0.15 -1.66 8.54 -39.43 -0.34 -2.00 16 5 C -0.02 -0.21 6.85 -79.98 -0.55 -0.76 16 6 N 0.03 0.43 4.45 33.95 0.15 0.58 16 7 O -0.17 -2.37 18.45 -29.46 -0.54 -2.91 16 8 O -0.16 -2.24 18.45 -29.46 -0.54 -2.79 16 9 C -0.09 -0.96 9.55 -39.56 -0.38 -1.34 16 10 C -0.06 -0.66 9.32 -39.60 -0.37 -1.03 16 11 C -0.03 -0.40 5.07 -104.48 -0.53 -0.93 16 12 C 0.12 1.52 2.52 -68.87 -0.17 1.35 16 13 H 0.10 1.34 7.35 -51.93 -0.38 0.96 16 14 C -0.17 -1.96 9.14 37.16 0.34 -1.62 16 15 N -0.68 -10.38 4.46 -107.95 -0.48 -10.86 16 16 C 0.08 1.45 4.38 -3.82 -0.02 1.43 16 17 C 0.07 1.57 0.57 -155.66 -0.09 1.48 16 18 C -0.13 -2.91 7.92 37.16 0.29 -2.61 16 19 C -0.12 -2.75 8.09 37.16 0.30 -2.45 16 20 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 21 H 0.05 1.34 7.74 -52.48 -0.41 0.94 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.88 -23.73 9.35 55.43 0.52 -23.21 16 24 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.11 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.15 1.40 5.85 -52.49 -0.31 1.09 16 32 H 0.15 1.48 7.61 -52.49 -0.40 1.08 16 33 H 0.16 1.71 6.88 -52.49 -0.36 1.35 16 34 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 35 H 0.07 0.81 7.46 -51.92 -0.39 0.43 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.34 4.98 5.95 -39.29 -0.23 4.75 16 38 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 39 H 0.02 0.34 7.44 -51.93 -0.39 -0.04 16 40 H 0.01 0.18 6.57 -51.93 -0.34 -0.16 16 41 H 0.08 2.10 6.07 -51.93 -0.32 1.78 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 1.92 6.07 -51.93 -0.32 1.60 16 45 H 0.02 0.41 7.60 -51.93 -0.39 0.01 16 46 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 372.21 15.07 5.61 5.61 Total: -1.00 -27.96 372.21 -8.33 -36.29 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.69 Total: 2.88 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -1.14 Total: -17.91 kcal Atomic # 7 Polarization: -33.68 SS G_CDS: 0.19 Total: -33.49 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -1.27 Total: -8.94 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.96 -8.33 -36.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595051190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.623 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds