Wall clock time and date at job start Tue Mar 31 2020 16:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.55640 * 2 1 4 4 C 1.53302 * 109.51107 * 239.88036 * 2 1 3 5 5 N 1.47151 * 108.38238 * 187.77035 * 4 2 1 6 6 C 1.34775 * 120.98353 * 230.50542 * 5 4 2 7 7 O 1.21588 * 119.99811 * 15.61833 * 6 5 4 8 8 N 1.34775 * 120.00113 * 195.61448 * 6 5 4 9 9 C 1.46491 * 120.00088 * 9.84364 * 8 6 5 10 10 C 1.50699 * 109.47372 * 252.79160 * 9 8 6 11 11 H 1.08000 * 119.99911 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00367 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99831 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00390 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47453 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.46856 * 300.00171 * 14 12 10 17 17 H 1.48494 * 109.47181 * 59.99539 * 14 12 10 18 18 C 1.46501 * 119.99580 * 189.84147 * 8 6 5 19 19 C 1.50697 * 109.47268 * 264.52886 * 18 8 6 20 20 C 1.34519 * 125.78655 * 90.54698 * 19 18 8 21 21 C 1.41376 * 106.84108 * 179.88914 * 20 19 18 22 22 C 1.34516 * 106.83984 * 0.37176 * 21 20 19 23 23 O 1.34300 * 108.42300 * 359.77341 * 22 21 20 24 24 C 1.47156 * 118.03582 * 50.78772 * 5 4 2 25 25 C 1.53710 * 108.16071 * 309.15767 * 24 5 4 26 26 H 1.09003 * 109.65245 * 292.57248 * 25 24 5 27 27 C 1.53001 * 109.48736 * 172.40118 * 25 24 5 28 28 O 1.42956 * 109.51732 * 120.13313 * 2 1 3 29 29 H 1.09005 * 109.46913 * 180.12294 * 1 2 3 30 30 H 1.08997 * 109.47022 * 300.12175 * 1 2 3 31 31 H 1.08997 * 109.47322 * 60.12333 * 1 2 3 32 32 H 1.08996 * 109.68318 * 68.04482 * 4 2 1 33 33 H 1.09004 * 109.70888 * 307.51256 * 4 2 1 34 34 H 1.09006 * 109.47445 * 132.79369 * 9 8 6 35 35 H 1.08997 * 109.47540 * 12.79331 * 9 8 6 36 36 H 0.96997 * 119.99876 * 359.97438 * 13 12 10 37 37 H 1.08996 * 109.47581 * 24.53556 * 18 8 6 38 38 H 1.09008 * 109.46643 * 144.53398 * 18 8 6 39 39 H 1.08002 * 126.57673 * 0.02562 * 20 19 18 40 40 H 1.08001 * 126.57876 * 180.16611 * 21 20 19 41 41 H 1.08005 * 125.78612 * 179.74685 * 22 21 20 42 42 H 1.09002 * 109.68095 * 68.93252 * 24 5 4 43 43 H 1.08997 * 109.68410 * 189.48795 * 24 5 4 44 44 H 1.09003 * 109.46645 * 300.36292 * 27 25 24 45 45 H 1.09002 * 109.46784 * 60.35949 * 27 25 24 46 46 H 1.08991 * 109.47089 * 180.35872 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7251 -1.2499 5 7 3.5012 -0.8760 -1.1338 6 6 4.3192 -0.5040 -2.1382 7 8 3.9030 0.2133 -3.0273 8 7 5.5987 -0.9271 -2.1570 9 6 6.0435 -1.9571 -1.2150 10 6 6.9149 -1.3288 -0.1582 11 1 7.1175 -0.2683 -0.1857 12 6 7.4545 -2.1078 0.8432 13 7 7.2090 -3.3995 0.8759 14 14 8.5340 -1.3288 2.1537 15 1 8.9861 -2.3732 3.1078 16 1 9.7165 -0.7004 1.5115 17 1 7.7584 -0.2937 2.8829 18 6 6.5446 -0.3570 -3.1196 19 6 6.6212 -1.2449 -4.3348 20 6 5.8569 -1.1380 -5.4366 21 6 6.2650 -2.1642 -6.3193 22 6 7.2486 -2.8420 -5.7008 23 8 7.4601 -2.2808 -4.4991 24 6 4.0403 -1.4510 0.1089 25 6 3.4313 -0.6856 1.2946 26 1 3.8030 0.3391 1.2993 27 6 3.8213 -1.3767 2.6027 28 8 2.0076 -0.6764 1.1653 29 1 -0.3633 -1.0277 0.0022 30 1 -0.3633 0.5157 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.8030 -0.1397 -2.1377 33 1 1.5758 -1.7078 -1.3217 34 1 6.6125 -2.7176 -1.7500 35 1 5.1755 -2.4176 -0.7435 36 1 6.6482 -3.8039 0.1957 37 1 6.2072 0.6361 -3.4159 38 1 7.5305 -0.2838 -2.6603 39 1 5.0819 -0.4070 -5.6138 40 1 5.8618 -2.3673 -7.3004 41 1 7.7781 -3.6934 -6.1023 42 1 3.7718 -2.5055 0.1722 43 1 5.1252 -1.3465 0.1213 44 1 3.4508 -2.4019 2.5964 45 1 4.9069 -1.3833 2.7005 46 1 3.3840 -0.8375 3.4429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599207032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:21 Heat of formation + Delta-G solvation = -9.500488 kcal Electronic energy + Delta-G solvation = -29417.363256 eV Core-core repulsion = 25504.149601 eV Total energy + Delta-G solvation = -3913.213655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17483 -40.35047 -38.28384 -35.88112 -34.39991 -33.39912 -33.00918 -32.55400 -30.34871 -29.80919 -27.61457 -26.60005 -25.74815 -24.43413 -22.94813 -21.72972 -21.34518 -20.66190 -20.23431 -19.16657 -17.50873 -16.96867 -16.55975 -16.25775 -16.06822 -15.56706 -15.32508 -14.91332 -14.24085 -14.17197 -13.98785 -13.84340 -13.54945 -13.18100 -13.02360 -12.70483 -12.47699 -12.39960 -12.33667 -12.15387 -11.99630 -11.84395 -11.67523 -11.44497 -11.34175 -10.97704 -10.88262 -10.75782 -10.47625 -10.28699 -9.88498 -9.69566 -9.57752 -9.44268 -8.91196 -8.68475 -8.24809 -8.06644 -7.65837 -6.71271 -4.50066 2.01971 2.87124 3.25581 3.28891 3.29866 3.34324 3.47021 3.75878 3.95596 4.24878 4.46011 4.93879 4.97271 5.07862 5.24499 5.25490 5.34620 5.37022 5.39275 5.53981 5.63144 5.69821 5.74726 5.79043 5.87911 6.03087 6.03728 6.10973 6.11575 6.21739 6.22773 6.29689 6.41359 6.43075 6.44080 6.61010 6.80682 6.84190 6.86751 6.98058 7.21153 7.48471 7.56702 7.57752 7.72927 8.07677 8.40327 8.56340 9.10811 9.22600 10.62720 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009063 B = 0.006459 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.730612 B = 4333.939735 C = 6871.292862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.077 3.923 3 H 0.058 0.942 4 C 0.102 3.898 5 N -0.629 5.629 6 C 0.714 3.286 7 O -0.611 6.611 8 N -0.604 5.604 9 C 0.191 3.809 10 C -0.623 4.623 11 H 0.062 0.938 12 C 0.033 3.967 13 N -0.884 5.884 14 Si 1.062 2.938 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.282 1.282 18 C 0.217 3.783 19 C -0.015 4.015 20 C -0.198 4.198 21 C -0.220 4.220 22 C -0.050 4.050 23 O -0.168 6.168 24 C 0.014 3.986 25 C 0.079 3.921 26 H 0.056 0.944 27 C -0.138 4.138 28 O -0.385 6.385 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.094 0.906 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.272 0.728 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.197 0.803 42 H 0.057 0.943 43 H 0.197 0.803 44 H 0.060 0.940 45 H 0.082 0.918 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.551 3.311 -3.911 7.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.018 3.982 3 H 0.076 0.924 4 C -0.022 4.022 5 N -0.366 5.366 6 C 0.418 3.582 7 O -0.493 6.493 8 N -0.337 5.337 9 C 0.071 3.929 10 C -0.661 4.661 11 H 0.080 0.920 12 C -0.175 4.175 13 N -0.517 5.517 14 Si 0.889 3.111 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.208 1.208 18 C 0.092 3.908 19 C -0.067 4.067 20 C -0.218 4.218 21 C -0.240 4.240 22 C -0.118 4.118 23 O -0.063 6.063 24 C -0.106 4.106 25 C 0.021 3.979 26 H 0.074 0.926 27 C -0.195 4.195 28 O -0.305 6.305 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.213 0.787 42 H 0.075 0.925 43 H 0.212 0.788 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.782 3.154 -2.662 6.317 hybrid contribution -0.927 0.161 -1.901 2.121 sum -5.710 3.314 -4.563 8.025 Atomic orbital electron populations 1.21703 0.92887 1.02857 1.02339 1.22360 0.94789 0.95409 0.85642 0.92394 1.22081 0.80204 1.00721 0.99185 1.47127 1.05418 1.67561 1.16523 1.15838 0.80973 0.79825 0.81564 1.90786 1.75679 1.42963 1.39825 1.47132 1.07774 1.42607 1.36230 1.20583 0.97138 0.87015 0.88153 1.22167 1.33928 0.97361 1.12632 0.92012 1.25879 0.97202 0.94948 0.99517 1.70822 1.34461 1.10757 1.35668 0.83624 0.76258 0.75497 0.75769 1.20340 1.21041 1.20809 1.19536 0.94861 0.92884 0.83494 1.23269 0.93307 0.91318 0.98811 1.21650 1.03114 1.02581 0.94476 1.21787 1.01080 0.99262 1.01835 1.23963 1.01863 1.01079 0.84909 1.84095 1.51063 1.37527 1.33662 1.24725 1.08957 0.95508 0.81447 1.22636 0.79935 0.99080 0.96201 0.92605 1.21675 1.02545 1.00625 0.94688 1.87872 1.22313 1.77406 1.42906 0.91798 0.91758 0.91105 0.88814 0.91943 0.96369 0.91746 0.91715 0.87780 0.88545 0.83535 0.84003 0.78651 0.92540 0.78777 0.92046 0.89893 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.57 37.16 0.36 -1.28 16 2 C 0.08 1.18 3.40 -26.57 -0.09 1.09 16 3 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.10 1.73 5.95 -3.53 -0.02 1.71 16 5 N -0.63 -12.60 2.98 -191.05 -0.57 -13.17 16 6 C 0.71 15.57 8.03 -86.92 -0.70 14.88 16 7 O -0.61 -13.97 15.50 5.29 0.08 -13.89 16 8 N -0.60 -12.99 2.49 -192.20 -0.48 -13.47 16 9 C 0.19 4.40 3.94 -5.20 -0.02 4.38 16 10 C -0.62 -14.94 6.80 -34.44 -0.23 -15.17 16 11 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 12 C 0.03 0.81 5.46 -17.82 -0.10 0.71 16 13 N -0.88 -23.01 13.65 55.43 0.76 -22.26 16 14 Si 1.06 22.02 29.90 -169.99 -5.08 16.93 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 18 C 0.22 4.20 5.87 -5.19 -0.03 4.17 16 19 C -0.02 -0.29 6.90 -35.62 -0.25 -0.53 16 20 C -0.20 -3.50 10.81 -39.70 -0.43 -3.93 16 21 C -0.22 -3.36 10.91 -39.70 -0.43 -3.80 16 22 C -0.05 -0.75 12.09 29.42 0.36 -0.40 16 23 O -0.17 -3.17 10.65 5.72 0.06 -3.11 16 24 C 0.01 0.27 3.84 -3.31 -0.01 0.26 16 25 C 0.08 1.44 3.41 -26.36 -0.09 1.35 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 C -0.14 -2.30 9.57 37.16 0.36 -1.95 16 28 O -0.39 -6.69 10.03 -35.23 -0.35 -7.04 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.59 7.10 -51.93 -0.37 1.22 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.46 8.01 -51.93 -0.42 0.05 16 35 H 0.07 1.52 3.65 -68.69 -0.25 1.27 16 36 H 0.27 7.14 7.22 -40.82 -0.29 6.85 16 37 H 0.10 1.91 7.41 -51.93 -0.38 1.52 16 38 H 0.10 1.84 7.82 -51.92 -0.41 1.44 16 39 H 0.15 2.57 8.06 -52.49 -0.42 2.14 16 40 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 41 H 0.20 2.11 8.06 -52.48 -0.42 1.69 16 42 H 0.06 1.17 7.58 -51.93 -0.39 0.78 16 43 H 0.20 4.32 2.17 -64.50 -0.14 4.18 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -28.45 369.29 -8.29 -36.74 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -6.93 Total: 12.20 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.34 Total: 1.50 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: -0.29 Total: -48.90 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.21 Total: -24.04 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.08 Total: 16.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.45 -8.29 -36.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599207032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.236 kcal (2) G-P(sol) polarization free energy of solvation -28.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds