Wall clock time and date at job start Tue Mar 31 2020 16:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.55640 * 2 1 4 4 C 1.53302 * 109.51107 * 239.88036 * 2 1 3 5 5 N 1.47151 * 108.38238 * 187.77035 * 4 2 1 6 6 C 1.34775 * 120.98353 * 230.50542 * 5 4 2 7 7 O 1.21588 * 119.99811 * 15.61833 * 6 5 4 8 8 N 1.34775 * 120.00113 * 195.61448 * 6 5 4 9 9 C 1.46491 * 120.00088 * 9.84364 * 8 6 5 10 10 C 1.50699 * 109.47372 * 252.79160 * 9 8 6 11 11 H 1.08000 * 119.99911 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00367 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99831 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00390 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47453 * 180.02562 * 14 12 10 16 16 H 1.48507 * 109.46856 * 300.00171 * 14 12 10 17 17 H 1.48494 * 109.47181 * 59.99539 * 14 12 10 18 18 C 1.46501 * 119.99580 * 189.84147 * 8 6 5 19 19 C 1.50697 * 109.47268 * 264.52886 * 18 8 6 20 20 C 1.34519 * 125.78655 * 90.54698 * 19 18 8 21 21 C 1.41376 * 106.84108 * 179.88914 * 20 19 18 22 22 C 1.34516 * 106.83984 * 0.37176 * 21 20 19 23 23 O 1.34300 * 108.42300 * 359.77341 * 22 21 20 24 24 C 1.47156 * 118.03582 * 50.78772 * 5 4 2 25 25 C 1.53710 * 108.16071 * 309.15767 * 24 5 4 26 26 H 1.09003 * 109.65245 * 292.57248 * 25 24 5 27 27 C 1.53001 * 109.48736 * 172.40118 * 25 24 5 28 28 O 1.42956 * 109.51732 * 120.13313 * 2 1 3 29 29 H 1.09005 * 109.46913 * 180.12294 * 1 2 3 30 30 H 1.08997 * 109.47022 * 300.12175 * 1 2 3 31 31 H 1.08997 * 109.47322 * 60.12333 * 1 2 3 32 32 H 1.08996 * 109.68318 * 68.04482 * 4 2 1 33 33 H 1.09004 * 109.70888 * 307.51256 * 4 2 1 34 34 H 1.09006 * 109.47445 * 132.79369 * 9 8 6 35 35 H 1.08997 * 109.47540 * 12.79331 * 9 8 6 36 36 H 0.96997 * 119.99876 * 359.97438 * 13 12 10 37 37 H 1.08996 * 109.47581 * 24.53556 * 18 8 6 38 38 H 1.09008 * 109.46643 * 144.53398 * 18 8 6 39 39 H 1.08002 * 126.57673 * 0.02562 * 20 19 18 40 40 H 1.08001 * 126.57876 * 180.16611 * 21 20 19 41 41 H 1.08005 * 125.78612 * 179.74685 * 22 21 20 42 42 H 1.09002 * 109.68095 * 68.93252 * 24 5 4 43 43 H 1.08997 * 109.68410 * 189.48795 * 24 5 4 44 44 H 1.09003 * 109.46645 * 300.36292 * 27 25 24 45 45 H 1.09002 * 109.46784 * 60.35949 * 27 25 24 46 46 H 1.08991 * 109.47089 * 180.35872 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8949 1.0271 0.0000 4 6 2.0420 -0.7251 -1.2499 5 7 3.5012 -0.8760 -1.1338 6 6 4.3192 -0.5040 -2.1382 7 8 3.9030 0.2133 -3.0273 8 7 5.5987 -0.9271 -2.1570 9 6 6.0435 -1.9571 -1.2150 10 6 6.9149 -1.3288 -0.1582 11 1 7.1175 -0.2683 -0.1857 12 6 7.4545 -2.1078 0.8432 13 7 7.2090 -3.3995 0.8759 14 14 8.5340 -1.3288 2.1537 15 1 8.9861 -2.3732 3.1078 16 1 9.7165 -0.7004 1.5115 17 1 7.7584 -0.2937 2.8829 18 6 6.5446 -0.3570 -3.1196 19 6 6.6212 -1.2449 -4.3348 20 6 5.8569 -1.1380 -5.4366 21 6 6.2650 -2.1642 -6.3193 22 6 7.2486 -2.8420 -5.7008 23 8 7.4601 -2.2808 -4.4991 24 6 4.0403 -1.4510 0.1089 25 6 3.4313 -0.6856 1.2946 26 1 3.8030 0.3391 1.2993 27 6 3.8213 -1.3767 2.6027 28 8 2.0076 -0.6764 1.1653 29 1 -0.3633 -1.0277 0.0022 30 1 -0.3633 0.5157 0.8889 31 1 -0.3634 0.5119 -0.8911 32 1 1.8030 -0.1397 -2.1377 33 1 1.5758 -1.7078 -1.3217 34 1 6.6125 -2.7176 -1.7500 35 1 5.1755 -2.4176 -0.7435 36 1 6.6482 -3.8039 0.1957 37 1 6.2072 0.6361 -3.4159 38 1 7.5305 -0.2838 -2.6603 39 1 5.0819 -0.4070 -5.6138 40 1 5.8618 -2.3673 -7.3004 41 1 7.7781 -3.6934 -6.1023 42 1 3.7718 -2.5055 0.1722 43 1 5.1252 -1.3465 0.1213 44 1 3.4508 -2.4019 2.5964 45 1 4.9069 -1.3833 2.7005 46 1 3.3840 -0.8375 3.4429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599207032.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:20 Heat of formation + Delta-G solvation = -25.117882 kcal Electronic energy + Delta-G solvation = -29418.040477 eV Core-core repulsion = 25504.149601 eV Total energy + Delta-G solvation = -3913.890876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.52631 -41.96391 -39.77234 -37.64536 -35.93959 -34.94585 -34.61772 -33.91824 -31.79609 -31.13880 -29.32242 -27.99339 -27.26612 -26.01132 -24.72911 -23.04309 -22.65981 -22.09689 -21.64592 -20.76969 -19.25987 -18.46339 -18.06160 -17.89653 -17.51298 -17.03441 -16.76441 -16.48274 -15.76727 -15.66599 -15.56730 -15.40417 -15.08369 -14.67425 -14.50409 -14.38408 -13.81221 -13.76488 -13.62155 -13.45589 -13.40543 -13.19285 -13.06302 -12.90845 -12.69533 -12.53637 -12.42476 -12.16530 -11.92914 -11.90966 -11.53782 -11.26955 -11.20684 -10.90162 -10.63922 -10.51985 -9.87068 -9.47907 -9.31096 -8.67624 -6.47825 0.65299 1.52203 1.59856 1.62481 1.79620 1.83508 1.88613 2.21014 2.52307 2.64025 2.79964 3.07355 3.63956 3.76539 3.91282 3.98170 3.99674 4.04081 4.09770 4.12156 4.27322 4.39316 4.42581 4.48267 4.52821 4.59411 4.68183 4.72200 4.84633 4.88512 4.93820 4.96950 4.98362 5.04092 5.11095 5.14787 5.24760 5.27343 5.31406 5.56289 5.59516 5.69229 5.93103 6.13631 6.20841 6.21884 6.42256 6.81233 7.26604 7.44507 8.64782 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009063 B = 0.006459 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3088.730612 B = 4333.939735 C = 6871.292862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.075 3.925 3 H 0.053 0.947 4 C 0.099 3.901 5 N -0.633 5.633 6 C 0.707 3.293 7 O -0.625 6.625 8 N -0.608 5.608 9 C 0.208 3.792 10 C -0.619 4.619 11 H 0.056 0.944 12 C 0.000 4.000 13 N -0.905 5.905 14 Si 1.099 2.901 15 H -0.282 1.282 16 H -0.276 1.276 17 H -0.262 1.262 18 C 0.217 3.783 19 C -0.046 4.046 20 C -0.199 4.199 21 C -0.224 4.224 22 C -0.043 4.043 23 O -0.194 6.194 24 C 0.018 3.982 25 C 0.084 3.916 26 H 0.051 0.949 27 C -0.132 4.132 28 O -0.387 6.387 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.070 0.930 34 H -0.010 1.010 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.144 0.856 40 H 0.175 0.825 41 H 0.239 0.761 42 H 0.045 0.955 43 H 0.178 0.822 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 3.704 -4.027 8.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.017 3.983 3 H 0.071 0.929 4 C -0.024 4.024 5 N -0.369 5.369 6 C 0.410 3.590 7 O -0.508 6.508 8 N -0.341 5.341 9 C 0.088 3.912 10 C -0.657 4.657 11 H 0.074 0.926 12 C -0.204 4.204 13 N -0.539 5.539 14 Si 0.921 3.079 15 H -0.207 1.207 16 H -0.202 1.202 17 H -0.186 1.186 18 C 0.093 3.907 19 C -0.097 4.097 20 C -0.220 4.220 21 C -0.242 4.242 22 C -0.110 4.110 23 O -0.090 6.090 24 C -0.103 4.103 25 C 0.026 3.974 26 H 0.069 0.931 27 C -0.190 4.190 28 O -0.307 6.307 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.008 0.992 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.162 0.838 40 H 0.193 0.807 41 H 0.256 0.744 42 H 0.063 0.937 43 H 0.194 0.806 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.670 3.563 -2.792 7.255 hybrid contribution -0.694 0.016 -1.994 2.111 sum -6.363 3.580 -4.786 8.730 Atomic orbital electron populations 1.21705 0.89627 1.03670 1.03948 1.22558 0.97173 0.94527 0.84065 0.92858 1.22314 0.78379 1.01492 1.00260 1.47292 1.06643 1.66990 1.15987 1.16014 0.81105 0.79974 0.81863 1.90759 1.75903 1.43692 1.40417 1.47187 1.08202 1.42288 1.36435 1.20304 0.96420 0.86735 0.87781 1.22220 1.33791 0.96943 1.12731 0.92611 1.26976 0.97681 0.94652 1.01055 1.70927 1.35505 1.11682 1.35798 0.83150 0.75459 0.75274 0.74030 1.20748 1.20202 1.18638 1.19542 0.94114 0.93428 0.83615 1.23106 0.94940 0.92453 0.99204 1.21817 1.02461 1.03006 0.94673 1.22150 1.00993 0.98238 1.02867 1.24893 1.01511 1.01286 0.83338 1.84074 1.51528 1.37848 1.35580 1.24481 1.08017 0.95273 0.82513 1.22526 0.80560 0.98489 0.95820 0.93068 1.21629 1.01840 1.00770 0.94757 1.87878 1.21391 1.77695 1.43720 0.91374 0.90636 0.89029 0.88751 0.91130 0.99243 0.92067 0.93017 0.87212 0.89108 0.83796 0.80748 0.74447 0.93680 0.80630 0.92168 0.91133 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 9.57 71.98 0.69 -2.03 16 2 C 0.08 2.20 3.40 30.70 0.10 2.30 16 3 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 4 C 0.10 3.27 5.95 86.36 0.51 3.78 16 5 N -0.63 -25.51 2.98 -876.63 -2.62 -28.12 16 6 C 0.71 31.32 8.03 179.06 1.44 32.75 16 7 O -0.63 -28.78 15.50 -3.99 -0.06 -28.85 16 8 N -0.61 -26.94 2.49 -880.25 -2.19 -29.14 16 9 C 0.21 9.97 3.94 85.63 0.34 10.30 16 10 C -0.62 -30.37 6.80 25.60 0.17 -30.20 16 11 H 0.06 2.77 7.81 -2.91 -0.02 2.74 16 12 C 0.00 0.00 5.46 84.65 0.46 0.46 16 13 N -0.91 -48.10 13.65 21.45 0.29 -47.80 16 14 Si 1.10 44.01 29.90 68.60 2.05 46.06 16 15 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -10.67 7.11 99.48 0.71 -9.97 16 17 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 18 C 0.22 8.69 5.87 85.63 0.50 9.19 16 19 C -0.05 -1.77 6.90 24.83 0.17 -1.60 16 20 C -0.20 -6.99 10.81 22.19 0.24 -6.75 16 21 C -0.22 -6.40 10.91 22.19 0.24 -6.15 16 22 C -0.04 -1.23 12.09 66.97 0.81 -0.42 16 23 O -0.19 -7.34 10.65 -2.47 -0.03 -7.37 16 24 C 0.02 0.72 3.84 86.49 0.33 1.05 16 25 C 0.08 3.02 3.41 30.83 0.11 3.12 16 26 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 27 C -0.13 -4.30 9.57 71.98 0.69 -3.61 16 28 O -0.39 -12.87 10.03 -148.98 -1.49 -14.37 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.35 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.09 3.12 7.10 -2.39 -0.02 3.10 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 34 H -0.01 -0.55 8.01 -2.38 -0.02 -0.57 16 35 H 0.06 3.00 3.65 -18.13 -0.07 2.94 16 36 H 0.26 14.16 7.22 -92.71 -0.67 13.49 16 37 H 0.11 4.16 7.41 -2.39 -0.02 4.15 16 38 H 0.09 3.64 7.82 -2.38 -0.02 3.62 16 39 H 0.14 5.04 8.06 -2.91 -0.02 5.02 16 40 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.24 4.36 8.06 -2.91 -0.02 4.34 16 42 H 0.05 1.93 7.58 -2.39 -0.02 1.91 16 43 H 0.18 8.00 2.17 -14.19 -0.03 7.97 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -61.84 369.29 3.76 -58.09 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: 1.00 Total: 39.29 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.81 Total: 12.20 kcal Atomic # 7 Polarization: -100.54 SS G_CDS: -4.52 Total: -105.06 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -1.58 Total: -50.58 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.05 Total: 46.06 kcal Total: -61.84 3.76 -58.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599207032.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.968 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds