Wall clock time and date at job start Tue Mar 31 2020 15:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 O 1.42901 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.36073 * 116.99554 * 179.97438 * 4 3 2 6 6 C 1.38550 * 120.00733 * 359.72661 * 5 4 3 7 7 C 1.38192 * 120.06810 * 179.76534 * 6 5 4 8 8 C 1.38827 * 120.07596 * 0.51236 * 7 6 5 9 9 N 1.40142 * 119.99838 * 179.76701 * 8 7 6 10 10 C 1.34773 * 119.99654 * 33.28960 * 9 8 7 11 11 O 1.21597 * 120.00284 * 5.29645 * 10 9 8 12 12 N 1.34780 * 120.00112 * 185.29859 * 10 9 8 13 13 C 1.46502 * 119.99728 * 359.97438 * 12 10 9 14 14 C 1.46490 * 120.00566 * 179.97438 * 12 10 9 15 15 C 1.50700 * 109.46995 * 89.99849 * 14 12 10 16 16 H 1.07996 * 120.00115 * 0.02562 * 15 14 12 17 17 C 1.37886 * 119.99790 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99784 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99860 * 19 17 15 21 21 H 1.48501 * 109.47023 * 209.99724 * 19 17 15 22 22 H 1.48498 * 109.47161 * 329.99706 * 19 17 15 23 23 C 1.38800 * 120.00844 * 359.73661 * 8 7 6 24 24 C 1.38508 * 119.93237 * 0.02562 * 23 8 7 25 25 O 1.35990 * 120.04084 * 180.02562 * 24 23 8 26 26 C 1.42902 * 116.99955 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47016 * 60.00100 * 1 2 3 28 28 H 1.08998 * 109.47454 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47468 * 300.00152 * 1 2 3 30 30 H 1.09006 * 109.46998 * 239.99710 * 2 1 3 31 31 H 1.09002 * 109.47016 * 119.99900 * 2 1 3 32 32 H 1.09002 * 109.47061 * 299.99873 * 3 2 1 33 33 H 1.08995 * 109.47040 * 59.99586 * 3 2 1 34 34 H 1.08006 * 119.96216 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.96152 * 180.25276 * 7 6 5 36 36 H 0.96992 * 119.99910 * 213.29211 * 9 8 7 37 37 H 1.09004 * 109.47177 * 89.99802 * 13 12 10 38 38 H 1.09000 * 109.47637 * 210.00051 * 13 12 10 39 39 H 1.09006 * 109.46804 * 330.00104 * 13 12 10 40 40 H 1.09000 * 109.47858 * 210.00070 * 14 12 10 41 41 H 1.08997 * 109.47209 * 330.00127 * 14 12 10 42 42 H 0.96997 * 120.00157 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.04110 * 180.02562 * 23 8 7 44 44 H 1.09004 * 109.46992 * 300.00351 * 26 25 24 45 45 H 1.09006 * 109.46543 * 59.99841 * 26 25 24 46 46 H 1.08999 * 109.47148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0868 2.6548 0.0001 6 6 3.3323 3.8169 -0.0066 7 6 3.9583 5.0489 -0.0022 8 6 5.3445 5.1249 -0.0017 9 7 5.9777 6.3751 -0.0022 10 6 5.4115 7.4174 0.6377 11 8 4.4023 7.2515 1.2954 12 7 5.9638 8.6436 0.5486 13 6 7.1799 8.8433 -0.2435 14 6 5.3481 9.7766 1.2436 15 6 5.9291 9.8918 2.6293 16 1 6.6820 9.1912 2.9591 17 6 5.5001 10.8922 3.4758 18 7 6.0075 10.9929 4.6849 19 14 4.1985 12.1042 2.9051 20 1 2.8512 11.5802 3.2449 21 1 4.4070 13.4096 3.5818 22 1 4.3024 12.2865 1.4350 23 6 6.1035 3.9628 -0.0002 24 6 5.4764 2.7278 0.0004 25 8 6.2178 1.5878 0.0024 26 6 7.6389 1.7381 0.0033 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.2538 3.7598 -0.0111 35 1 3.3685 5.9536 -0.0033 36 1 6.8233 6.4903 -0.4630 37 1 6.9086 9.0905 -1.2698 38 1 7.7627 9.6588 0.1848 39 1 7.7734 7.9290 -0.2347 40 1 5.5460 10.6941 0.6893 41 1 4.2718 9.6191 1.3128 42 1 5.7056 11.6964 5.2805 43 1 7.1819 4.0213 0.0006 44 1 7.9469 2.2863 -0.8871 45 1 7.9454 2.2885 0.8929 46 1 8.1084 0.7544 0.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599929320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:29 Heat of formation + Delta-G solvation = -65.102257 kcal Electronic energy + Delta-G solvation = -27052.268733 eV Core-core repulsion = 23136.644004 eV Total energy + Delta-G solvation = -3915.624728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.74713 -39.69152 -38.57189 -37.06998 -35.00260 -34.41041 -33.62841 -32.43728 -30.25038 -29.37422 -28.25922 -27.10838 -26.58271 -25.83866 -23.14943 -22.80868 -21.66969 -21.26780 -19.54681 -18.54999 -17.87422 -17.38357 -16.98665 -16.45882 -16.29410 -15.92696 -15.66080 -15.05455 -14.80234 -14.68019 -14.45150 -14.18721 -13.92417 -13.59750 -13.25994 -12.98703 -12.84739 -12.54844 -12.45450 -12.39098 -12.31164 -12.08673 -11.77674 -11.59101 -11.51715 -11.40515 -11.28389 -10.98503 -10.94003 -10.77891 -10.54192 -10.18857 -9.68828 -9.51709 -9.35743 -8.59973 -8.53677 -7.82384 -7.32132 -6.09543 -4.08538 1.31974 1.54232 3.00315 3.16797 3.26192 3.29156 3.34693 3.36734 3.57616 3.98952 4.33700 4.38764 4.62491 4.65386 4.83296 4.93820 4.99594 5.06820 5.07421 5.18790 5.22638 5.25507 5.31426 5.38525 5.38662 5.41150 5.45689 5.55424 5.67504 5.73307 5.80880 5.81393 5.93617 6.02343 6.32084 6.41682 6.52237 6.60748 6.84545 7.00904 7.06153 7.20786 7.44729 7.59898 7.61840 8.40481 8.46189 8.93365 9.10527 9.50282 11.03941 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002823 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.186545 B = 9916.613343 C =11093.013339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 O -0.308 6.308 5 C 0.075 3.925 6 C -0.150 4.150 7 C -0.116 4.116 8 C 0.186 3.814 9 N -0.693 5.693 10 C 0.700 3.300 11 O -0.566 6.566 12 N -0.608 5.608 13 C 0.084 3.916 14 C 0.230 3.770 15 C -0.530 4.530 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.207 4.207 24 C 0.117 3.883 25 O -0.306 6.306 26 C 0.026 3.974 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.402 0.598 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.265 0.735 43 H 0.136 0.864 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -18.731 -14.913 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.223 6.223 5 C 0.029 3.971 6 C -0.169 4.169 7 C -0.137 4.137 8 C 0.090 3.910 9 N -0.343 5.343 10 C 0.402 3.598 11 O -0.442 6.442 12 N -0.343 5.343 13 C -0.060 4.060 14 C 0.110 3.890 15 C -0.569 4.569 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.229 4.229 24 C 0.071 3.929 25 O -0.220 6.220 26 C -0.069 4.069 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.153 0.847 35 H 0.161 0.839 36 H 0.239 0.761 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.153 0.847 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.546 -18.982 -14.247 23.870 hybrid contribution 0.074 1.190 -0.214 1.211 sum -2.472 -17.792 -14.460 23.060 Atomic orbital electron populations 1.21695 0.94415 1.02347 1.02280 1.21457 0.95827 0.95063 1.03607 1.22837 0.79120 0.98536 1.01355 1.86113 1.20471 1.26071 1.89612 1.18069 0.88871 0.85028 1.05114 1.20926 0.99816 0.90916 1.05240 1.20972 0.93130 0.98179 1.01427 1.17128 0.91466 0.83618 0.98792 1.42921 1.26186 1.07889 1.57292 1.15846 0.83680 0.80374 0.79904 1.90912 1.26045 1.82888 1.44309 1.47139 1.27651 1.07585 1.51885 1.21624 0.87521 1.02009 0.94895 1.19621 0.94582 0.82251 0.92579 1.21347 1.24114 1.14861 0.96557 0.90818 1.24862 0.96166 0.97387 0.94648 1.69899 1.43218 1.33496 1.06946 0.86837 0.82756 0.80736 0.79252 1.19861 1.21079 1.19046 1.20649 0.99997 0.90102 1.12150 1.17804 0.88015 0.85314 1.01779 1.86160 1.18482 1.28128 1.89212 1.23045 0.78949 1.03596 1.01314 0.92403 0.91886 0.92291 0.90965 0.90878 0.92248 0.92095 0.84718 0.83921 0.76148 0.93442 0.90041 0.92907 0.94950 0.94343 0.92543 0.84665 0.92827 0.92636 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.99 6.30 -26.73 -0.17 -1.16 16 3 C 0.06 0.58 4.74 37.16 0.18 0.75 16 4 O -0.31 -4.22 9.92 -34.57 -0.34 -4.56 16 5 C 0.07 1.09 6.70 -39.13 -0.26 0.83 16 6 C -0.15 -2.13 9.03 -39.48 -0.36 -2.48 16 7 C -0.12 -1.90 8.65 -39.38 -0.34 -2.24 16 8 C 0.19 2.95 6.28 -83.63 -0.53 2.43 16 9 N -0.69 -11.06 5.23 -14.20 -0.07 -11.13 16 10 C 0.70 14.53 8.02 -86.92 -0.70 13.84 16 11 O -0.57 -14.04 13.61 5.28 0.07 -13.97 16 12 N -0.61 -12.38 2.86 -188.74 -0.54 -12.92 16 13 C 0.08 1.22 10.25 59.85 0.61 1.83 16 14 C 0.23 5.57 4.23 -5.20 -0.02 5.55 16 15 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 16 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 18 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 19 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 23 C -0.21 -2.84 8.95 -39.27 -0.35 -3.19 16 24 C 0.12 1.68 6.70 -39.14 -0.26 1.42 16 25 O -0.31 -4.08 10.28 -34.31 -0.35 -4.43 16 26 C 0.03 0.23 9.81 101.05 0.99 1.22 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.53 7.65 -51.93 -0.40 0.14 16 33 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 34 H 0.14 1.59 6.29 -52.48 -0.33 1.26 16 35 H 0.14 2.56 6.40 -52.49 -0.34 2.23 16 36 H 0.40 4.97 6.51 -40.82 -0.27 4.70 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 1.23 8.07 -51.93 -0.42 0.82 16 39 H 0.05 0.62 6.29 -51.93 -0.33 0.29 16 40 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 41 H 0.04 0.99 6.85 -51.93 -0.36 0.64 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 43 H 0.14 1.49 6.29 -52.49 -0.33 1.16 16 44 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 45 H 0.06 0.47 7.66 -51.93 -0.40 0.08 16 46 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 376.89 15.07 5.68 5.68 Total: -1.00 -36.13 376.89 -7.60 -43.73 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.87 Total: 3.12 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.28 Total: 4.67 kcal Atomic # 7 Polarization: -51.15 SS G_CDS: 0.16 Total: -50.99 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.62 Total: -22.97 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.13 -7.60 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599929320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.369 kcal (2) G-P(sol) polarization free energy of solvation -36.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds