Wall clock time and date at job start Tue Mar 31 2020 15:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 O 1.42901 * 109.46834 * 179.97438 * 3 2 1 5 5 C 1.36073 * 116.99554 * 179.97438 * 4 3 2 6 6 C 1.38550 * 120.00733 * 359.72661 * 5 4 3 7 7 C 1.38192 * 120.06810 * 179.76534 * 6 5 4 8 8 C 1.38827 * 120.07596 * 0.51236 * 7 6 5 9 9 N 1.40142 * 119.99838 * 179.76701 * 8 7 6 10 10 C 1.34773 * 119.99654 * 33.28960 * 9 8 7 11 11 O 1.21597 * 120.00284 * 5.29645 * 10 9 8 12 12 N 1.34780 * 120.00112 * 185.29859 * 10 9 8 13 13 C 1.46502 * 119.99728 * 359.97438 * 12 10 9 14 14 C 1.46490 * 120.00566 * 179.97438 * 12 10 9 15 15 C 1.50700 * 109.46995 * 89.99849 * 14 12 10 16 16 H 1.07996 * 120.00115 * 0.02562 * 15 14 12 17 17 C 1.37886 * 119.99790 * 179.97438 * 15 14 12 18 18 N 1.31517 * 119.99784 * 180.02562 * 17 15 14 19 19 Si 1.86792 * 120.00074 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.47123 * 89.99860 * 19 17 15 21 21 H 1.48501 * 109.47023 * 209.99724 * 19 17 15 22 22 H 1.48498 * 109.47161 * 329.99706 * 19 17 15 23 23 C 1.38800 * 120.00844 * 359.73661 * 8 7 6 24 24 C 1.38508 * 119.93237 * 0.02562 * 23 8 7 25 25 O 1.35990 * 120.04084 * 180.02562 * 24 23 8 26 26 C 1.42902 * 116.99955 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.47016 * 60.00100 * 1 2 3 28 28 H 1.08998 * 109.47454 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47468 * 300.00152 * 1 2 3 30 30 H 1.09006 * 109.46998 * 239.99710 * 2 1 3 31 31 H 1.09002 * 109.47016 * 119.99900 * 2 1 3 32 32 H 1.09002 * 109.47061 * 299.99873 * 3 2 1 33 33 H 1.08995 * 109.47040 * 59.99586 * 3 2 1 34 34 H 1.08006 * 119.96216 * 0.02562 * 6 5 4 35 35 H 1.08001 * 119.96152 * 180.25276 * 7 6 5 36 36 H 0.96992 * 119.99910 * 213.29211 * 9 8 7 37 37 H 1.09004 * 109.47177 * 89.99802 * 13 12 10 38 38 H 1.09000 * 109.47637 * 210.00051 * 13 12 10 39 39 H 1.09006 * 109.46804 * 330.00104 * 13 12 10 40 40 H 1.09000 * 109.47858 * 210.00070 * 14 12 10 41 41 H 1.08997 * 109.47209 * 330.00127 * 14 12 10 42 42 H 0.96997 * 120.00157 * 180.02562 * 18 17 15 43 43 H 1.08000 * 120.04110 * 180.02562 * 23 8 7 44 44 H 1.09004 * 109.46992 * 300.00351 * 26 25 24 45 45 H 1.09006 * 109.46543 * 59.99841 * 26 25 24 46 46 H 1.08999 * 109.47148 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4424 0.0006 5 6 4.0868 2.6548 0.0001 6 6 3.3323 3.8169 -0.0066 7 6 3.9583 5.0489 -0.0022 8 6 5.3445 5.1249 -0.0017 9 7 5.9777 6.3751 -0.0022 10 6 5.4115 7.4174 0.6377 11 8 4.4023 7.2515 1.2954 12 7 5.9638 8.6436 0.5486 13 6 7.1799 8.8433 -0.2435 14 6 5.3481 9.7766 1.2436 15 6 5.9291 9.8918 2.6293 16 1 6.6820 9.1912 2.9591 17 6 5.5001 10.8922 3.4758 18 7 6.0075 10.9929 4.6849 19 14 4.1985 12.1042 2.9051 20 1 2.8512 11.5802 3.2449 21 1 4.4070 13.4096 3.5818 22 1 4.3024 12.2865 1.4350 23 6 6.1035 3.9628 -0.0002 24 6 5.4764 2.7278 0.0004 25 8 6.2178 1.5878 0.0024 26 6 7.6389 1.7381 0.0033 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 2.2538 3.7598 -0.0111 35 1 3.3685 5.9536 -0.0033 36 1 6.8233 6.4903 -0.4630 37 1 6.9086 9.0905 -1.2698 38 1 7.7627 9.6588 0.1848 39 1 7.7734 7.9290 -0.2347 40 1 5.5460 10.6941 0.6893 41 1 4.2718 9.6191 1.3128 42 1 5.7056 11.6964 5.2805 43 1 7.1819 4.0213 0.0006 44 1 7.9469 2.2863 -0.8871 45 1 7.9454 2.2885 0.8929 46 1 8.1084 0.7544 0.0054 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599929320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:28 Heat of formation + Delta-G solvation = -89.430187 kcal Electronic energy + Delta-G solvation = -27053.323671 eV Core-core repulsion = 23136.644004 eV Total energy + Delta-G solvation = -3916.679667 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.95383 -41.03388 -39.53451 -38.28346 -36.63081 -35.57871 -34.75122 -34.34617 -31.36329 -30.80115 -29.73067 -27.97415 -27.52289 -27.16019 -24.84424 -23.77595 -23.04320 -22.12216 -20.98810 -19.67973 -19.15203 -19.14107 -18.62449 -17.46041 -17.30523 -17.24077 -16.56205 -16.48492 -16.44503 -15.86089 -15.63770 -15.35226 -15.05874 -14.92677 -14.49709 -14.36675 -14.08334 -13.85261 -13.67278 -13.54301 -13.42444 -13.21415 -12.98149 -12.85007 -12.59755 -12.44260 -12.38190 -12.26339 -12.14562 -12.01763 -11.83199 -11.73882 -11.56009 -11.17683 -10.81753 -10.75941 -9.68779 -9.41883 -8.50416 -8.32760 -6.38012 0.19844 0.36493 1.34347 1.39395 1.47150 1.62890 2.11288 2.22963 2.32596 2.33772 2.74522 2.98096 3.03399 3.73571 3.97163 3.97862 4.05918 4.13810 4.22537 4.25907 4.30955 4.40355 4.43574 4.50084 4.53701 4.56959 4.60723 4.67764 4.76245 4.79182 4.84226 4.88529 4.93737 5.12628 5.19930 5.21863 5.28247 5.33876 5.37980 5.45841 5.55384 5.78089 5.97446 6.11467 6.26834 6.59904 6.63283 6.97645 7.23582 7.56497 8.84402 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014771 B = 0.002823 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1895.186545 B = 9916.613343 C =11093.013339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.048 3.952 4 O -0.321 6.321 5 C 0.069 3.931 6 C -0.148 4.148 7 C -0.135 4.135 8 C 0.164 3.836 9 N -0.672 5.672 10 C 0.695 3.305 11 O -0.616 6.616 12 N -0.616 5.616 13 C 0.076 3.924 14 C 0.240 3.760 15 C -0.536 4.536 16 H 0.026 0.974 17 C 0.009 3.991 18 N -0.947 5.947 19 Si 0.950 3.050 20 H -0.277 1.277 21 H -0.276 1.276 22 H -0.234 1.234 23 C -0.195 4.195 24 C 0.111 3.889 25 O -0.322 6.322 26 C 0.015 3.985 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.420 0.580 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.022 0.978 42 H 0.268 0.732 43 H 0.164 0.836 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.726 -19.275 -17.213 25.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.027 4.027 4 O -0.236 6.236 5 C 0.023 3.977 6 C -0.167 4.167 7 C -0.156 4.156 8 C 0.068 3.932 9 N -0.324 5.324 10 C 0.396 3.604 11 O -0.496 6.496 12 N -0.350 5.350 13 C -0.066 4.066 14 C 0.117 3.883 15 C -0.575 4.575 16 H 0.044 0.956 17 C -0.189 4.189 18 N -0.587 5.587 19 Si 0.773 3.227 20 H -0.203 1.203 21 H -0.202 1.202 22 H -0.156 1.156 23 C -0.217 4.217 24 C 0.064 3.936 25 O -0.236 6.236 26 C -0.079 4.079 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.260 0.740 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.040 0.960 42 H 0.077 0.923 43 H 0.181 0.819 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.372 -19.566 -16.615 25.778 hybrid contribution 0.128 1.153 0.521 1.271 sum -2.243 -18.414 -16.094 24.559 Atomic orbital electron populations 1.21689 0.92878 1.03233 1.02606 1.21470 0.97027 0.93633 1.03442 1.23126 0.77463 1.00125 1.01958 1.86110 1.22358 1.25675 1.89413 1.18289 0.89452 0.85377 1.04613 1.21037 1.00805 0.90174 1.04727 1.20913 0.93635 0.98085 1.03002 1.17309 0.91588 0.83961 1.00312 1.42551 1.26480 1.06863 1.56475 1.16058 0.83312 0.81208 0.79794 1.90872 1.28364 1.83818 1.46558 1.47115 1.29247 1.06627 1.52059 1.21960 0.85601 1.03458 0.95614 1.19303 0.93547 0.84652 0.90812 1.21584 1.23103 1.13712 0.99090 0.95590 1.25884 0.98698 0.99753 0.94570 1.70058 1.45268 1.34819 1.08603 0.85684 0.78597 0.77782 0.80674 1.20300 1.20150 1.15642 1.20807 1.01225 0.88955 1.10671 1.18004 0.88337 0.85934 1.01276 1.86152 1.20681 1.27762 1.88960 1.23385 0.76672 1.05550 1.02286 0.91785 0.90737 0.92277 0.90806 0.91375 0.91072 0.92020 0.82944 0.86194 0.73965 0.89967 0.90740 0.89961 0.92403 0.96013 0.92304 0.81865 0.91069 0.92320 0.86129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.79 6.30 30.59 0.19 -1.60 16 3 C 0.05 0.93 4.74 71.98 0.34 1.27 16 4 O -0.32 -8.57 9.92 -80.41 -0.80 -9.37 16 5 C 0.07 1.97 6.70 22.56 0.15 2.12 16 6 C -0.15 -4.22 9.03 22.33 0.20 -4.02 16 7 C -0.14 -4.51 8.65 22.40 0.19 -4.32 16 8 C 0.16 5.11 6.28 38.09 0.24 5.35 16 9 N -0.67 -20.84 5.23 -317.10 -1.66 -22.50 16 10 C 0.69 28.96 8.02 179.05 1.44 30.40 16 11 O -0.62 -31.64 13.61 -4.02 -0.05 -31.70 16 12 N -0.62 -24.71 2.86 -869.31 -2.48 -27.20 16 13 C 0.08 2.03 10.25 127.77 1.31 3.34 16 14 C 0.24 11.50 4.23 85.63 0.36 11.87 16 15 C -0.54 -31.52 9.94 25.60 0.25 -31.27 16 16 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 17 C 0.01 0.51 5.47 84.66 0.46 0.98 16 18 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 19 Si 0.95 44.14 27.47 68.60 1.88 46.02 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.23 -9.56 6.54 99.48 0.65 -8.91 16 23 C -0.20 -5.04 8.95 22.47 0.20 -4.84 16 24 C 0.11 3.06 6.70 22.55 0.15 3.21 16 25 O -0.32 -8.03 10.28 -79.47 -0.82 -8.84 16 26 C 0.02 0.23 9.81 113.37 1.11 1.34 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.07 1.20 7.65 -2.39 -0.02 1.18 16 33 H 0.06 1.18 7.67 -2.39 -0.02 1.16 16 34 H 0.15 3.59 6.29 -2.91 -0.02 3.57 16 35 H 0.12 4.54 6.40 -2.91 -0.02 4.52 16 36 H 0.42 9.41 6.51 -92.71 -0.60 8.81 16 37 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.12 8.07 -2.39 -0.02 2.11 16 39 H 0.08 1.69 6.29 -2.38 -0.02 1.67 16 40 H 0.06 2.49 7.13 -2.39 -0.02 2.48 16 41 H 0.02 1.12 6.85 -2.39 -0.02 1.11 16 42 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 43 H 0.16 3.14 6.29 -2.91 -0.02 3.12 16 44 H 0.07 0.83 7.66 -2.38 -0.02 0.81 16 45 H 0.06 0.86 7.66 -2.38 -0.02 0.84 16 46 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -82.42 376.89 4.03 -78.39 By element: Atomic # 1 Polarization: 21.85 SS G_CDS: 0.33 Total: 22.19 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 7.32 Total: 12.92 kcal Atomic # 7 Polarization: -105.77 SS G_CDS: -3.84 Total: -109.61 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -1.67 Total: -49.91 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.02 kcal Total: -82.42 4.03 -78.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599929320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.043 kcal (2) G-P(sol) polarization free energy of solvation -82.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds