Wall clock time and date at job start Tue Mar 31 2020 15:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 O 1.42902 * 109.47520 * 180.02562 * 3 2 1 5 5 C 1.36069 * 117.00022 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.00416 * 359.97438 * 5 4 3 7 7 C 1.38200 * 120.06510 * 179.97438 * 6 5 4 8 8 C 1.38832 * 120.07444 * 0.02590 * 7 6 5 9 9 N 1.40139 * 119.99385 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99766 * 326.68979 * 9 8 7 11 11 O 1.21581 * 120.00102 * 354.68800 * 10 9 8 12 12 N 1.34781 * 119.99906 * 174.69066 * 10 9 8 13 13 C 1.46495 * 119.99898 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47274 * 34.72251 * 13 12 10 15 15 C 1.52997 * 109.47194 * 274.71983 * 13 12 10 16 16 C 1.50698 * 109.46915 * 154.72372 * 13 12 10 17 17 H 1.08004 * 120.00153 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99938 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00089 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00077 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46820 * 60.00341 * 20 18 16 22 22 H 1.48497 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47133 * 300.00362 * 20 18 16 24 24 C 1.38804 * 120.00932 * 0.22560 * 8 7 6 25 25 C 1.38514 * 119.93106 * 359.49713 * 24 8 7 26 26 O 1.35984 * 120.03909 * 180.27598 * 25 24 8 27 27 C 1.42900 * 116.99892 * 0.25386 * 26 25 24 28 28 H 1.09002 * 109.46708 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47090 * 299.99231 * 1 2 3 30 30 H 1.08994 * 109.47294 * 60.00036 * 1 2 3 31 31 H 1.09006 * 109.47300 * 240.00397 * 2 1 3 32 32 H 1.08994 * 109.47294 * 119.99964 * 2 1 3 33 33 H 1.08998 * 109.47400 * 60.00060 * 3 2 1 34 34 H 1.09008 * 109.47161 * 300.00258 * 3 2 1 35 35 H 1.08003 * 119.96953 * 359.95818 * 6 5 4 36 36 H 1.08000 * 119.96178 * 180.02562 * 7 6 5 37 37 H 0.97003 * 119.99931 * 146.70267 * 9 8 7 38 38 H 0.97004 * 119.99532 * 359.72182 * 12 10 9 39 39 H 1.09007 * 109.47244 * 300.00502 * 15 13 12 40 40 H 1.09003 * 109.47095 * 60.00116 * 15 13 12 41 41 H 1.08994 * 109.47271 * 179.97438 * 15 13 12 42 42 H 0.96997 * 119.99961 * 179.97438 * 19 18 16 43 43 H 1.07991 * 120.03425 * 179.74886 * 24 8 7 44 44 H 1.09000 * 109.47155 * 179.97438 * 27 26 25 45 45 H 1.09006 * 109.46930 * 299.99920 * 27 26 25 46 46 H 1.08999 * 109.47607 * 60.00159 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0866 2.6551 -0.0012 6 6 3.3320 3.8170 -0.0018 7 6 3.9580 5.0491 -0.0019 8 6 5.3443 5.1251 -0.0020 9 7 5.9773 6.3754 -0.0026 10 6 5.4114 7.4169 -0.6441 11 8 4.4029 7.2501 -1.3025 12 7 5.9634 8.6433 -0.5559 13 6 5.3480 9.7754 -1.2527 14 1 4.2643 9.6587 -1.2490 15 6 5.8513 9.8201 -2.6968 16 6 5.7176 11.0575 -0.5522 17 1 6.3476 11.0315 0.3247 18 6 5.2515 12.2636 -1.0307 19 7 4.4840 12.2953 -2.0982 20 14 5.7091 13.8528 -0.1619 21 1 7.1856 14.0117 -0.1659 22 1 5.0864 15.0006 -0.8690 23 1 5.2197 13.8095 1.2394 24 6 6.1033 3.9630 -0.0067 25 6 5.4762 2.7280 -0.0008 26 8 6.2177 1.5881 0.0003 27 6 7.6388 1.7385 0.0008 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 2.2535 3.7599 -0.0024 36 1 3.3682 5.9538 -0.0019 37 1 6.8228 6.4912 0.4585 38 1 6.7658 8.7771 -0.0273 39 1 6.9351 9.9367 -2.7005 40 1 5.5840 8.8927 -3.2036 41 1 5.3930 10.6621 -3.2154 42 1 4.1558 13.1438 -2.4345 43 1 7.1816 4.0217 -0.0108 44 1 8.1083 0.7548 0.0021 45 1 7.9463 2.2872 -0.8895 46 1 7.9457 2.2883 0.8905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599930250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:35 Heat of formation + Delta-G solvation = -83.102589 kcal Electronic energy + Delta-G solvation = -26769.575506 eV Core-core repulsion = 22853.170225 eV Total energy + Delta-G solvation = -3916.405281 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.71825 -39.54708 -38.58239 -37.02664 -34.93542 -34.28932 -33.58757 -32.34342 -30.25165 -29.54244 -28.35800 -27.07234 -26.41628 -25.26644 -22.98410 -22.66368 -21.31044 -21.04789 -19.84808 -18.54791 -18.28236 -17.64785 -16.55787 -16.45592 -16.09068 -15.70092 -15.64375 -15.04003 -14.91405 -14.47388 -14.46100 -14.19312 -14.04029 -13.53490 -13.21317 -12.83889 -12.71673 -12.48933 -12.38723 -12.32450 -11.84369 -11.78271 -11.56830 -11.42633 -11.28381 -11.12017 -11.00772 -10.95514 -10.81768 -10.72059 -10.34646 -10.25105 -9.64244 -9.36657 -9.07613 -8.58592 -8.54543 -7.98579 -7.33145 -6.14593 -4.24019 1.31510 1.53963 3.05970 3.17076 3.23944 3.26904 3.29657 3.32825 3.61098 4.02497 4.30330 4.61516 4.64988 4.82328 4.87861 4.94024 5.00436 5.04362 5.07975 5.17915 5.18630 5.25236 5.31741 5.36989 5.39642 5.45240 5.55910 5.67253 5.80433 5.84447 5.93632 6.39839 6.42137 6.54774 6.78669 6.95968 7.00407 7.05879 7.11009 7.22797 7.43532 7.59605 7.61116 7.81350 7.97521 8.13108 8.70176 8.82548 9.21495 9.44374 10.91389 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002418 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.218702 B =11577.130662 C =12640.806803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 O -0.309 6.309 5 C 0.074 3.926 6 C -0.150 4.150 7 C -0.116 4.116 8 C 0.187 3.813 9 N -0.695 5.695 10 C 0.692 3.308 11 O -0.580 6.580 12 N -0.719 5.719 13 C 0.281 3.719 14 H 0.050 0.950 15 C -0.148 4.148 16 C -0.535 4.535 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.883 5.883 20 Si 0.903 3.097 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.208 4.208 25 C 0.115 3.885 26 O -0.307 6.307 27 C 0.027 3.973 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.135 0.865 36 H 0.145 0.855 37 H 0.402 0.598 38 H 0.386 0.614 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.091 0.909 42 H 0.265 0.735 43 H 0.135 0.865 44 H 0.097 0.903 45 H 0.054 0.946 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.043 -21.911 6.028 22.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.019 4.019 4 O -0.223 6.223 5 C 0.029 3.971 6 C -0.169 4.169 7 C -0.136 4.136 8 C 0.090 3.910 9 N -0.343 5.343 10 C 0.393 3.607 11 O -0.458 6.458 12 N -0.370 5.370 13 C 0.179 3.821 14 H 0.068 0.932 15 C -0.207 4.207 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.230 4.230 25 C 0.070 3.930 26 O -0.220 6.220 27 C -0.069 4.069 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.236 0.764 38 H 0.218 0.782 39 H 0.045 0.955 40 H 0.034 0.966 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.153 0.847 44 H 0.115 0.885 45 H 0.073 0.927 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.023 -22.157 5.261 22.773 hybrid contribution 1.206 1.451 0.829 2.061 sum 1.229 -20.706 6.089 21.618 Atomic orbital electron populations 1.21696 0.94398 1.02349 1.02305 1.21455 0.95845 0.95057 1.03585 1.22840 0.79100 0.98533 1.01381 1.86109 1.20493 1.26093 1.89626 1.18073 0.88873 0.85027 1.05172 1.20940 0.99846 0.90920 1.05206 1.21022 0.93208 0.98230 1.01186 1.17128 0.91444 0.83654 0.98738 1.42853 1.26238 1.08030 1.57198 1.16154 0.83711 0.80777 0.80076 1.90890 1.26042 1.83535 1.45296 1.45875 1.30755 1.06845 1.53510 1.18682 0.94330 0.80606 0.88502 0.93238 1.22108 0.98959 1.00457 0.99184 1.21162 1.32781 0.90581 1.12788 0.92126 1.24884 0.94705 0.99154 0.94961 1.69893 1.33270 1.26537 1.22302 0.86486 0.78643 0.82223 0.79596 1.20182 1.21111 1.20175 1.20656 0.99970 0.90108 1.12281 1.17806 0.88005 0.85313 1.01920 1.86158 1.18444 1.28173 1.89245 1.23035 0.78996 1.03563 1.01270 0.91888 0.92366 0.92298 0.90913 0.90959 0.92204 0.92116 0.84713 0.83779 0.76371 0.78173 0.95525 0.96581 0.89079 0.92464 0.84691 0.88457 0.92725 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.12 -0.98 6.30 -26.73 -0.17 -1.14 16 3 C 0.06 0.57 4.74 37.16 0.18 0.74 16 4 O -0.31 -4.18 9.92 -34.57 -0.34 -4.52 16 5 C 0.07 1.07 6.70 -39.13 -0.26 0.81 16 6 C -0.15 -2.12 9.03 -39.48 -0.36 -2.47 16 7 C -0.12 -1.88 8.65 -39.38 -0.34 -2.23 16 8 C 0.19 2.89 6.28 -83.63 -0.53 2.37 16 9 N -0.69 -10.69 5.35 -14.20 -0.08 -10.76 16 10 C 0.69 13.93 8.27 -86.91 -0.72 13.21 16 11 O -0.58 -13.91 13.68 5.29 0.07 -13.84 16 12 N -0.72 -14.72 5.07 -59.82 -0.30 -15.02 16 13 C 0.28 7.07 2.56 -69.09 -0.18 6.89 16 14 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 15 C -0.15 -3.68 9.26 37.16 0.34 -3.34 16 16 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 17 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 18 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 19 N -0.88 -24.65 11.32 55.43 0.63 -24.02 16 20 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 24 C -0.21 -2.76 8.95 -39.27 -0.35 -3.11 16 25 C 0.12 1.62 6.70 -39.14 -0.26 1.36 16 26 O -0.31 -3.98 10.28 -34.30 -0.35 -4.34 16 27 C 0.03 0.23 9.81 101.05 0.99 1.22 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 34 H 0.06 0.58 7.66 -51.92 -0.40 0.18 16 35 H 0.14 1.59 6.29 -52.48 -0.33 1.26 16 36 H 0.14 2.64 6.41 -52.49 -0.34 2.31 16 37 H 0.40 4.68 8.84 -40.82 -0.36 4.32 16 38 H 0.39 6.69 8.56 -40.82 -0.35 6.34 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 43 H 0.14 1.41 6.29 -52.49 -0.33 1.08 16 44 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.43 7.65 -51.93 -0.40 0.03 16 46 H 0.05 0.39 7.67 -51.93 -0.40 -0.01 16 LS Contribution 379.54 15.07 5.72 5.72 Total: -1.00 -32.45 379.54 -8.28 -40.74 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -6.93 Total: 9.51 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.68 Total: 1.15 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.25 Total: -49.80 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: -0.62 Total: -22.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.45 -8.28 -40.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599930250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.368 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds