Wall clock time and date at job start Tue Mar 31 2020 15:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47005 * 2 1 4 4 O 1.42902 * 109.47520 * 180.02562 * 3 2 1 5 5 C 1.36069 * 117.00022 * 179.97438 * 4 3 2 6 6 C 1.38545 * 120.00416 * 359.97438 * 5 4 3 7 7 C 1.38200 * 120.06510 * 179.97438 * 6 5 4 8 8 C 1.38832 * 120.07444 * 0.02590 * 7 6 5 9 9 N 1.40139 * 119.99385 * 179.97438 * 8 7 6 10 10 C 1.34778 * 119.99766 * 326.68979 * 9 8 7 11 11 O 1.21581 * 120.00102 * 354.68800 * 10 9 8 12 12 N 1.34781 * 119.99906 * 174.69066 * 10 9 8 13 13 C 1.46495 * 119.99898 * 180.02562 * 12 10 9 14 14 H 1.08993 * 109.47274 * 34.72251 * 13 12 10 15 15 C 1.52997 * 109.47194 * 274.71983 * 13 12 10 16 16 C 1.50698 * 109.46915 * 154.72372 * 13 12 10 17 17 H 1.08004 * 120.00153 * 359.97438 * 16 13 12 18 18 C 1.37878 * 119.99938 * 179.97438 * 16 13 12 19 19 N 1.31516 * 120.00089 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 120.00077 * 179.97438 * 18 16 13 21 21 H 1.48504 * 109.46820 * 60.00341 * 20 18 16 22 22 H 1.48497 * 109.47228 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47133 * 300.00362 * 20 18 16 24 24 C 1.38804 * 120.00932 * 0.22560 * 8 7 6 25 25 C 1.38514 * 119.93106 * 359.49713 * 24 8 7 26 26 O 1.35984 * 120.03909 * 180.27598 * 25 24 8 27 27 C 1.42900 * 116.99892 * 0.25386 * 26 25 24 28 28 H 1.09002 * 109.46708 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47090 * 299.99231 * 1 2 3 30 30 H 1.08994 * 109.47294 * 60.00036 * 1 2 3 31 31 H 1.09006 * 109.47300 * 240.00397 * 2 1 3 32 32 H 1.08994 * 109.47294 * 119.99964 * 2 1 3 33 33 H 1.08998 * 109.47400 * 60.00060 * 3 2 1 34 34 H 1.09008 * 109.47161 * 300.00258 * 3 2 1 35 35 H 1.08003 * 119.96953 * 359.95818 * 6 5 4 36 36 H 1.08000 * 119.96178 * 180.02562 * 7 6 5 37 37 H 0.97003 * 119.99931 * 146.70267 * 9 8 7 38 38 H 0.97004 * 119.99532 * 359.72182 * 12 10 9 39 39 H 1.09007 * 109.47244 * 300.00502 * 15 13 12 40 40 H 1.09003 * 109.47095 * 60.00116 * 15 13 12 41 41 H 1.08994 * 109.47271 * 179.97438 * 15 13 12 42 42 H 0.96997 * 119.99961 * 179.97438 * 19 18 16 43 43 H 1.07991 * 120.03425 * 179.74886 * 24 8 7 44 44 H 1.09000 * 109.47155 * 179.97438 * 27 26 25 45 45 H 1.09006 * 109.46930 * 299.99920 * 27 26 25 46 46 H 1.08999 * 109.47607 * 60.00159 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0866 2.6551 -0.0012 6 6 3.3320 3.8170 -0.0018 7 6 3.9580 5.0491 -0.0019 8 6 5.3443 5.1251 -0.0020 9 7 5.9773 6.3754 -0.0026 10 6 5.4114 7.4169 -0.6441 11 8 4.4029 7.2501 -1.3025 12 7 5.9634 8.6433 -0.5559 13 6 5.3480 9.7754 -1.2527 14 1 4.2643 9.6587 -1.2490 15 6 5.8513 9.8201 -2.6968 16 6 5.7176 11.0575 -0.5522 17 1 6.3476 11.0315 0.3247 18 6 5.2515 12.2636 -1.0307 19 7 4.4840 12.2953 -2.0982 20 14 5.7091 13.8528 -0.1619 21 1 7.1856 14.0117 -0.1659 22 1 5.0864 15.0006 -0.8690 23 1 5.2197 13.8095 1.2394 24 6 6.1033 3.9630 -0.0067 25 6 5.4762 2.7280 -0.0008 26 8 6.2177 1.5881 0.0003 27 6 7.6388 1.7385 0.0008 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 2.2535 3.7599 -0.0024 36 1 3.3682 5.9538 -0.0019 37 1 6.8228 6.4912 0.4585 38 1 6.7658 8.7771 -0.0273 39 1 6.9351 9.9367 -2.7005 40 1 5.5840 8.8927 -3.2036 41 1 5.3930 10.6621 -3.2154 42 1 4.1558 13.1438 -2.4345 43 1 7.1816 4.0217 -0.0108 44 1 8.1083 0.7548 0.0021 45 1 7.9463 2.2872 -0.8895 46 1 7.9457 2.2883 0.8905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599930250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:34 Heat of formation + Delta-G solvation = -104.298167 kcal Electronic energy + Delta-G solvation = -26770.494615 eV Core-core repulsion = 22853.170225 eV Total energy + Delta-G solvation = -3917.324391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.89364 -40.94321 -39.52905 -38.28550 -36.68083 -35.45684 -34.64454 -34.15862 -31.37412 -31.06107 -29.68639 -27.88286 -27.36437 -27.24590 -24.30245 -23.67314 -22.62345 -22.11483 -21.52026 -19.88726 -19.58982 -18.79094 -18.08447 -17.41829 -17.28886 -17.20200 -16.67086 -16.48672 -16.22974 -15.82460 -15.66460 -15.33954 -15.08996 -14.92067 -14.41928 -14.25208 -13.91287 -13.80546 -13.54917 -13.38952 -12.99957 -12.96672 -12.89779 -12.74759 -12.59486 -12.38925 -12.27464 -12.23979 -12.14367 -12.12319 -11.83018 -11.55998 -11.21588 -11.10760 -10.75345 -10.58876 -9.84369 -9.57143 -8.50373 -8.16588 -6.33933 0.20685 0.36804 1.46137 1.48409 1.55914 1.72315 2.15077 2.23222 2.34834 2.43109 2.75477 3.13919 3.42255 3.75224 3.97220 3.98387 4.06715 4.15933 4.23232 4.30477 4.42786 4.45285 4.51835 4.54661 4.56942 4.69981 4.76425 4.79790 4.84287 4.93852 5.10081 5.12717 5.20062 5.21731 5.28767 5.32624 5.37525 5.44088 5.60125 5.66548 5.78191 5.86752 6.09908 6.11250 6.26648 6.60686 6.73534 7.23352 7.34749 7.67519 8.89645 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018294 B = 0.002418 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.218702 B =11577.130662 C =12640.806803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.048 3.952 4 O -0.321 6.321 5 C 0.068 3.932 6 C -0.149 4.149 7 C -0.138 4.138 8 C 0.167 3.833 9 N -0.673 5.673 10 C 0.693 3.307 11 O -0.623 6.623 12 N -0.713 5.713 13 C 0.289 3.711 14 H 0.000 1.000 15 C -0.134 4.134 16 C -0.546 4.546 17 H 0.075 0.925 18 C 0.014 3.986 19 N -0.917 5.917 20 Si 0.974 3.026 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.271 1.271 24 C -0.193 4.193 25 C 0.112 3.888 26 O -0.322 6.322 27 C 0.015 3.985 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.151 0.849 36 H 0.116 0.884 37 H 0.422 0.578 38 H 0.404 0.596 39 H 0.041 0.959 40 H 0.010 0.990 41 H 0.067 0.933 42 H 0.266 0.734 43 H 0.167 0.833 44 H 0.120 0.880 45 H 0.062 0.938 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -22.953 7.358 24.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.027 4.027 4 O -0.235 6.235 5 C 0.022 3.978 6 C -0.168 4.168 7 C -0.159 4.159 8 C 0.071 3.929 9 N -0.323 5.323 10 C 0.393 3.607 11 O -0.504 6.504 12 N -0.366 5.366 13 C 0.185 3.815 14 H 0.018 0.982 15 C -0.193 4.193 16 C -0.584 4.584 17 H 0.093 0.907 18 C -0.186 4.186 19 N -0.555 5.555 20 Si 0.798 3.202 21 H -0.188 1.188 22 H -0.213 1.213 23 H -0.196 1.196 24 C -0.214 4.214 25 C 0.065 3.935 26 O -0.236 6.236 27 C -0.079 4.079 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.168 0.832 36 H 0.134 0.866 37 H 0.261 0.739 38 H 0.239 0.761 39 H 0.060 0.940 40 H 0.029 0.971 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.184 0.816 44 H 0.138 0.862 45 H 0.080 0.920 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.892 -23.253 6.639 24.256 hybrid contribution 0.624 1.586 0.419 1.755 sum 2.516 -21.668 7.057 22.926 Atomic orbital electron populations 1.21691 0.92923 1.03243 1.02583 1.21466 0.96992 0.93597 1.03477 1.23123 0.77494 1.00135 1.01912 1.86107 1.22321 1.25690 1.89425 1.18284 0.89522 0.85284 1.04671 1.21016 1.00746 0.90231 1.04810 1.20913 0.93854 0.97948 1.03170 1.17275 0.91384 0.84041 1.00221 1.42440 1.26621 1.06931 1.56293 1.16227 0.83172 0.81330 0.79930 1.90868 1.28017 1.84269 1.47209 1.45442 1.31313 1.06123 1.53680 1.18255 0.91846 0.82137 0.89258 0.98192 1.21927 0.99503 0.99121 0.98788 1.21492 1.32826 0.90896 1.13206 0.90707 1.25802 0.94511 1.02725 0.95580 1.70049 1.34348 1.27310 1.23814 0.85375 0.78840 0.77663 0.78302 1.18821 1.21298 1.19626 1.20817 1.01300 0.88768 1.10514 1.17997 0.88244 0.85999 1.01241 1.86154 1.20724 1.27761 1.88950 1.23389 0.76613 1.05553 1.02355 0.90696 0.91922 0.92214 0.91215 0.90872 0.91313 0.91922 0.83177 0.86637 0.73948 0.76055 0.94016 0.97088 0.91398 0.92526 0.81569 0.86195 0.91987 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.76 6.30 30.59 0.19 -1.57 16 3 C 0.05 0.93 4.74 71.98 0.34 1.27 16 4 O -0.32 -8.45 9.92 -80.37 -0.80 -9.25 16 5 C 0.07 1.93 6.70 22.56 0.15 2.08 16 6 C -0.15 -4.25 9.03 22.33 0.20 -4.05 16 7 C -0.14 -4.62 8.65 22.40 0.19 -4.43 16 8 C 0.17 5.06 6.28 38.09 0.24 5.30 16 9 N -0.67 -20.11 5.35 -317.10 -1.70 -21.81 16 10 C 0.69 28.17 8.27 179.05 1.48 29.65 16 11 O -0.62 -31.12 13.68 -3.97 -0.05 -31.17 16 12 N -0.71 -29.15 5.07 -461.44 -2.34 -31.49 16 13 C 0.29 14.87 2.56 44.24 0.11 14.98 16 14 H 0.00 0.01 7.57 -2.39 -0.02 -0.01 16 15 C -0.13 -6.81 9.26 71.98 0.67 -6.14 16 16 C -0.55 -28.42 8.73 25.60 0.22 -28.20 16 17 H 0.07 3.60 7.74 -2.91 -0.02 3.57 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -52.24 11.32 21.45 0.24 -52.00 16 20 Si 0.97 41.43 29.54 68.60 2.03 43.46 16 21 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 22 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 C -0.19 -4.73 8.95 22.47 0.20 -4.52 16 25 C 0.11 2.97 6.70 22.56 0.15 3.12 16 26 O -0.32 -7.70 10.28 -79.40 -0.82 -8.51 16 27 C 0.02 0.21 9.81 113.37 1.11 1.32 16 28 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.07 1.19 7.66 -2.39 -0.02 1.17 16 34 H 0.06 1.17 7.66 -2.38 -0.02 1.16 16 35 H 0.15 3.61 6.29 -2.91 -0.02 3.59 16 36 H 0.12 4.53 6.41 -2.91 -0.02 4.51 16 37 H 0.42 8.92 8.84 -92.71 -0.82 8.10 16 38 H 0.40 13.45 8.56 -92.71 -0.79 12.66 16 39 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.17 2.90 6.29 -2.92 -0.02 2.88 16 44 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.06 0.78 7.65 -2.38 -0.02 0.76 16 46 H 0.07 0.76 7.67 -2.39 -0.02 0.74 16 Total: -1.00 -72.05 379.54 2.39 -69.65 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.60 Total: 32.04 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 6.43 Total: 9.09 kcal Atomic # 7 Polarization: -101.51 SS G_CDS: -3.80 Total: -105.31 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -1.67 Total: -48.94 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -72.05 2.39 -69.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599930250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.645 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds