Wall clock time and date at job start Tue Mar 31 2020 15:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47077 * 2 1 4 4 O 1.42899 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.36069 * 116.99907 * 179.97438 * 4 3 2 6 6 C 1.38543 * 120.00748 * 359.97438 * 5 4 3 7 7 C 1.38189 * 120.06965 * 179.97438 * 6 5 4 8 8 C 1.38833 * 120.07529 * 0.02562 * 7 6 5 9 9 N 1.40143 * 119.99478 * 179.97438 * 8 7 6 10 10 C 1.34763 * 120.00155 * 35.10070 * 9 8 7 11 11 O 1.21595 * 120.00210 * 355.38395 * 10 9 8 12 12 N 1.34775 * 120.00039 * 175.38460 * 10 9 8 13 13 C 1.46502 * 120.00090 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47545 * 324.99875 * 13 12 10 15 15 C 1.52998 * 109.47293 * 84.99780 * 13 12 10 16 16 C 1.50703 * 109.47393 * 204.99814 * 13 12 10 17 17 H 1.08004 * 119.99743 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00260 * 180.27217 * 16 13 12 19 19 N 1.31518 * 120.00027 * 179.72419 * 18 16 13 20 20 Si 1.86800 * 120.00104 * 359.73066 * 18 16 13 21 21 H 1.48495 * 109.47705 * 89.99493 * 20 18 16 22 22 H 1.48499 * 109.47236 * 210.00213 * 20 18 16 23 23 H 1.48510 * 109.46944 * 329.99252 * 20 18 16 24 24 C 1.38801 * 120.00393 * 0.23528 * 8 7 6 25 25 C 1.38503 * 119.93602 * 359.48912 * 24 8 7 26 26 O 1.35994 * 120.03885 * 180.28441 * 25 24 8 27 27 C 1.42893 * 116.99987 * 0.24849 * 26 25 24 28 28 H 1.08998 * 109.46897 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47016 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.46747 * 60.00345 * 1 2 3 31 31 H 1.08998 * 109.47016 * 239.99840 * 2 1 3 32 32 H 1.09003 * 109.47242 * 119.99834 * 2 1 3 33 33 H 1.08998 * 109.47328 * 60.00031 * 3 2 1 34 34 H 1.09003 * 109.46949 * 300.00013 * 3 2 1 35 35 H 1.08008 * 119.96588 * 359.95413 * 6 5 4 36 36 H 1.08003 * 119.96309 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99439 * 215.09955 * 9 8 7 38 38 H 0.97001 * 120.00379 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47538 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47480 * 300.00342 * 15 13 12 41 41 H 1.09006 * 109.47046 * 60.00253 * 15 13 12 42 42 H 0.96998 * 119.99826 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.02841 * 179.74678 * 24 8 7 44 44 H 1.09000 * 109.47581 * 60.00323 * 27 26 25 45 45 H 1.09007 * 109.47102 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.47216 * 300.00284 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0867 2.6550 -0.0012 6 6 3.3323 3.8169 -0.0018 7 6 3.9582 5.0489 -0.0019 8 6 5.3445 5.1250 -0.0020 9 7 5.9775 6.3753 -0.0026 10 6 5.4301 7.4081 0.6680 11 8 4.3459 7.2792 1.2033 12 7 6.0842 8.5839 0.7453 13 6 5.4894 9.7066 1.4747 14 1 4.4069 9.6898 1.3477 15 6 5.8301 9.5867 2.9615 16 6 6.0383 11.0028 0.9365 17 1 6.7580 10.9915 0.1313 18 6 5.6256 12.2028 1.4754 19 7 6.1088 13.3338 1.0093 20 14 4.3804 12.2225 2.8677 21 1 5.0925 12.1670 4.1696 22 1 3.5769 13.4692 2.7957 23 1 3.4816 11.0467 2.7446 24 6 6.1034 3.9628 -0.0069 25 6 5.4763 2.7279 -0.0010 26 8 6.2179 1.5879 0.0001 27 6 7.6389 1.7383 0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2537 3.7599 -0.0025 36 1 3.3684 5.9537 -0.0027 37 1 6.8098 6.4972 -0.4857 38 1 6.9493 8.6867 0.3186 39 1 5.3872 10.4217 3.5043 40 1 5.4332 8.6492 3.3508 41 1 6.9126 9.6036 3.0886 42 1 5.8187 14.1780 1.3888 43 1 7.1818 4.0215 -0.0111 44 1 7.9459 2.2881 0.8901 45 1 8.1084 0.7545 0.0008 46 1 7.9464 2.2870 -0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599930251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:38 Heat of formation + Delta-G solvation = -74.195633 kcal Electronic energy + Delta-G solvation = -26860.752416 eV Core-core repulsion = 22944.733369 eV Total energy + Delta-G solvation = -3916.019047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.79709 -39.68996 -38.63701 -37.14448 -35.13488 -34.37751 -33.68135 -32.37128 -30.32882 -30.11101 -28.77231 -27.13389 -26.50159 -25.19959 -23.06560 -22.75442 -21.36690 -21.14719 -19.99940 -18.60181 -18.45677 -17.72282 -16.66332 -16.51170 -16.16750 -15.98642 -15.72315 -15.17584 -14.98177 -14.58560 -14.50770 -14.31306 -14.22298 -13.51668 -13.29907 -13.03682 -12.89210 -12.70445 -12.51606 -12.37210 -12.21023 -11.93537 -11.83468 -11.62021 -11.46600 -11.40796 -11.22898 -11.03910 -10.84078 -10.81650 -10.20681 -9.84077 -9.65306 -9.40541 -9.25673 -8.79289 -8.61371 -8.23029 -7.42566 -6.23463 -4.26271 1.24508 1.47472 2.95933 3.10852 3.21102 3.22341 3.34493 3.39196 3.50183 3.88480 4.29620 4.56330 4.60563 4.70884 4.77590 4.88539 4.94796 5.00727 5.02169 5.11509 5.14065 5.20250 5.26793 5.32389 5.34706 5.40584 5.49199 5.63404 5.76195 5.77189 5.89130 6.27275 6.31294 6.36104 6.38346 6.49151 6.54705 6.79588 6.93866 6.99188 7.04128 7.26204 7.43765 7.50497 7.55422 8.23963 8.57263 8.74958 9.04338 9.37348 10.88593 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002578 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.373514 B =10858.518463 C =12045.089896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 O -0.308 6.308 5 C 0.077 3.923 6 C -0.152 4.152 7 C -0.115 4.115 8 C 0.181 3.819 9 N -0.692 5.692 10 C 0.696 3.304 11 O -0.583 6.583 12 N -0.711 5.711 13 C 0.254 3.746 14 H 0.050 0.950 15 C -0.163 4.163 16 C -0.535 4.535 17 H 0.080 0.920 18 C 0.078 3.922 19 N -0.892 5.892 20 Si 0.886 3.114 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.261 1.261 24 C -0.206 4.206 25 C 0.115 3.885 26 O -0.306 6.306 27 C 0.026 3.974 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.404 0.596 38 H 0.393 0.607 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.268 0.732 43 H 0.136 0.864 44 H 0.054 0.946 45 H 0.097 0.903 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -25.182 -3.581 25.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.018 4.018 4 O -0.223 6.223 5 C 0.031 3.969 6 C -0.172 4.172 7 C -0.136 4.136 8 C 0.085 3.915 9 N -0.341 5.341 10 C 0.396 3.604 11 O -0.461 6.461 12 N -0.363 5.363 13 C 0.150 3.850 14 H 0.068 0.932 15 C -0.221 4.221 16 C -0.573 4.573 17 H 0.098 0.902 18 C -0.126 4.126 19 N -0.529 5.529 20 Si 0.716 3.284 21 H -0.203 1.203 22 H -0.222 1.222 23 H -0.186 1.186 24 C -0.227 4.227 25 C 0.069 3.931 26 O -0.220 6.220 27 C -0.069 4.069 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.239 0.761 38 H 0.226 0.774 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.154 0.846 44 H 0.073 0.927 45 H 0.116 0.884 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.260 -25.347 -3.035 25.736 hybrid contribution 0.431 0.741 0.387 0.941 sum -2.829 -24.606 -2.647 24.909 Atomic orbital electron populations 1.21698 0.94382 1.02378 1.02290 1.21458 0.95855 0.95027 1.03616 1.22844 0.79055 0.98575 1.01372 1.86115 1.20530 1.26081 1.89546 1.18104 0.88897 0.85061 1.04816 1.20967 0.99873 0.90958 1.05374 1.21161 0.93290 0.98355 1.00774 1.17125 0.91416 0.83507 0.99432 1.42725 1.28059 1.08467 1.54812 1.16091 0.84394 0.80516 0.79387 1.90868 1.20784 1.82383 1.52091 1.45464 1.23065 1.10678 1.57062 1.19028 0.95270 0.83368 0.87350 0.93233 1.22481 1.01150 0.99291 0.99165 1.21020 1.27604 0.88170 1.20535 0.90196 1.24822 0.95814 0.95221 0.96696 1.69865 1.43253 0.97661 1.42091 0.86868 0.81851 0.77389 0.82326 1.20303 1.22155 1.18576 1.20680 1.00024 0.90117 1.11910 1.17812 0.88021 0.85346 1.01964 1.86163 1.18486 1.28120 1.89225 1.23042 0.78932 1.03624 1.01289 0.91860 0.92326 0.92351 0.90924 0.90908 0.92129 0.92182 0.84711 0.83331 0.76123 0.77394 0.93399 0.94454 0.92865 0.92245 0.84616 0.92718 0.88412 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.91 37.16 0.37 -0.51 16 2 C -0.12 -0.93 6.30 -26.73 -0.17 -1.10 16 3 C 0.06 0.54 4.74 37.16 0.18 0.72 16 4 O -0.31 -4.01 9.92 -34.56 -0.34 -4.36 16 5 C 0.08 1.06 6.70 -39.13 -0.26 0.80 16 6 C -0.15 -2.05 9.03 -39.49 -0.36 -2.40 16 7 C -0.12 -1.78 8.69 -39.38 -0.34 -2.12 16 8 C 0.18 2.66 6.30 -83.63 -0.53 2.13 16 9 N -0.69 -10.03 5.35 -14.20 -0.08 -10.11 16 10 C 0.70 13.14 8.37 -86.93 -0.73 12.41 16 11 O -0.58 -13.02 13.44 5.28 0.07 -12.95 16 12 N -0.71 -13.80 5.07 -59.81 -0.30 -14.10 16 13 C 0.25 5.96 2.15 -69.08 -0.15 5.81 16 14 H 0.05 1.29 6.64 -51.93 -0.34 0.94 16 15 C -0.16 -3.62 8.96 37.16 0.33 -3.29 16 16 C -0.54 -14.23 9.31 -34.44 -0.32 -14.56 16 17 H 0.08 2.23 7.98 -52.48 -0.42 1.81 16 18 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 19 N -0.89 -26.14 13.96 55.43 0.77 -25.36 16 20 Si 0.89 21.59 24.37 -169.99 -4.14 17.44 16 21 H -0.28 -6.53 6.86 56.52 0.39 -6.14 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.21 -2.58 8.95 -39.28 -0.35 -2.93 16 25 C 0.11 1.54 6.70 -39.14 -0.26 1.28 16 26 O -0.31 -3.84 10.28 -34.32 -0.35 -4.19 16 27 C 0.03 0.21 9.81 101.05 0.99 1.20 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 34 H 0.06 0.51 7.66 -51.93 -0.40 0.12 16 35 H 0.14 1.50 6.29 -52.48 -0.33 1.17 16 36 H 0.15 2.58 6.22 -52.48 -0.33 2.26 16 37 H 0.40 4.42 8.84 -40.82 -0.36 4.06 16 38 H 0.39 6.56 8.56 -40.82 -0.35 6.21 16 39 H 0.05 1.10 3.25 -51.93 -0.17 0.93 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 43 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 44 H 0.05 0.41 7.67 -51.93 -0.40 0.01 16 45 H 0.10 0.58 8.14 -51.92 -0.42 0.16 16 46 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -33.22 372.44 -7.24 -40.46 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -6.78 Total: 8.03 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -1.70 Total: -0.47 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: 0.39 Total: -49.57 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.62 Total: -21.50 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.22 -7.24 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599930251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.735 kcal (2) G-P(sol) polarization free energy of solvation -33.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds