Wall clock time and date at job start Tue Mar 31 2020 15:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.47077 * 2 1 4 4 O 1.42899 * 109.47276 * 180.02562 * 3 2 1 5 5 C 1.36069 * 116.99907 * 179.97438 * 4 3 2 6 6 C 1.38543 * 120.00748 * 359.97438 * 5 4 3 7 7 C 1.38189 * 120.06965 * 179.97438 * 6 5 4 8 8 C 1.38833 * 120.07529 * 0.02562 * 7 6 5 9 9 N 1.40143 * 119.99478 * 179.97438 * 8 7 6 10 10 C 1.34763 * 120.00155 * 35.10070 * 9 8 7 11 11 O 1.21595 * 120.00210 * 355.38395 * 10 9 8 12 12 N 1.34775 * 120.00039 * 175.38460 * 10 9 8 13 13 C 1.46502 * 120.00090 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47545 * 324.99875 * 13 12 10 15 15 C 1.52998 * 109.47293 * 84.99780 * 13 12 10 16 16 C 1.50703 * 109.47393 * 204.99814 * 13 12 10 17 17 H 1.08004 * 119.99743 * 0.02562 * 16 13 12 18 18 C 1.37871 * 120.00260 * 180.27217 * 16 13 12 19 19 N 1.31518 * 120.00027 * 179.72419 * 18 16 13 20 20 Si 1.86800 * 120.00104 * 359.73066 * 18 16 13 21 21 H 1.48495 * 109.47705 * 89.99493 * 20 18 16 22 22 H 1.48499 * 109.47236 * 210.00213 * 20 18 16 23 23 H 1.48510 * 109.46944 * 329.99252 * 20 18 16 24 24 C 1.38801 * 120.00393 * 0.23528 * 8 7 6 25 25 C 1.38503 * 119.93602 * 359.48912 * 24 8 7 26 26 O 1.35994 * 120.03885 * 180.28441 * 25 24 8 27 27 C 1.42893 * 116.99987 * 0.24849 * 26 25 24 28 28 H 1.08998 * 109.46897 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47016 * 300.00160 * 1 2 3 30 30 H 1.09002 * 109.46747 * 60.00345 * 1 2 3 31 31 H 1.08998 * 109.47016 * 239.99840 * 2 1 3 32 32 H 1.09003 * 109.47242 * 119.99834 * 2 1 3 33 33 H 1.08998 * 109.47328 * 60.00031 * 3 2 1 34 34 H 1.09003 * 109.46949 * 300.00013 * 3 2 1 35 35 H 1.08008 * 119.96588 * 359.95413 * 6 5 4 36 36 H 1.08003 * 119.96309 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99439 * 215.09955 * 9 8 7 38 38 H 0.97001 * 120.00379 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47538 * 180.02562 * 15 13 12 40 40 H 1.09001 * 109.47480 * 300.00342 * 15 13 12 41 41 H 1.09006 * 109.47046 * 60.00253 * 15 13 12 42 42 H 0.96998 * 119.99826 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.02841 * 179.74678 * 24 8 7 44 44 H 1.09000 * 109.47581 * 60.00323 * 27 26 25 45 45 H 1.09007 * 109.47102 * 180.02562 * 27 26 25 46 46 H 1.09000 * 109.47216 * 300.00284 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0867 2.6550 -0.0012 6 6 3.3323 3.8169 -0.0018 7 6 3.9582 5.0489 -0.0019 8 6 5.3445 5.1250 -0.0020 9 7 5.9775 6.3753 -0.0026 10 6 5.4301 7.4081 0.6680 11 8 4.3459 7.2792 1.2033 12 7 6.0842 8.5839 0.7453 13 6 5.4894 9.7066 1.4747 14 1 4.4069 9.6898 1.3477 15 6 5.8301 9.5867 2.9615 16 6 6.0383 11.0028 0.9365 17 1 6.7580 10.9915 0.1313 18 6 5.6256 12.2028 1.4754 19 7 6.1088 13.3338 1.0093 20 14 4.3804 12.2225 2.8677 21 1 5.0925 12.1670 4.1696 22 1 3.5769 13.4692 2.7957 23 1 3.4816 11.0467 2.7446 24 6 6.1034 3.9628 -0.0069 25 6 5.4763 2.7279 -0.0010 26 8 6.2179 1.5879 0.0001 27 6 7.6389 1.7383 0.0004 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 2.2537 3.7599 -0.0025 36 1 3.3684 5.9537 -0.0027 37 1 6.8098 6.4972 -0.4857 38 1 6.9493 8.6867 0.3186 39 1 5.3872 10.4217 3.5043 40 1 5.4332 8.6492 3.3508 41 1 6.9126 9.6036 3.0886 42 1 5.8187 14.1780 1.3888 43 1 7.1818 4.0215 -0.0111 44 1 7.9459 2.2881 0.8901 45 1 8.1084 0.7545 0.0008 46 1 7.9464 2.2870 -0.8898 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599930251.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:37 Heat of formation + Delta-G solvation = -97.198493 kcal Electronic energy + Delta-G solvation = -26861.749895 eV Core-core repulsion = 22944.733369 eV Total energy + Delta-G solvation = -3917.016526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.91413 -40.98842 -39.53117 -38.33996 -36.78454 -35.47468 -34.65290 -34.26783 -31.79878 -31.29381 -29.84739 -27.89231 -27.33188 -27.17582 -24.34696 -23.67958 -22.63314 -22.11031 -21.58065 -19.98780 -19.58825 -18.79945 -18.35834 -17.46754 -17.37817 -17.28111 -16.71795 -16.48902 -16.20336 -15.96204 -15.74063 -15.34071 -15.12501 -14.92055 -14.87960 -14.27736 -14.12902 -13.89522 -13.79374 -13.52048 -13.38338 -13.21335 -12.97983 -12.77506 -12.61037 -12.39706 -12.25332 -12.15085 -12.10708 -11.84315 -11.61767 -11.55708 -11.27457 -11.17263 -10.86444 -10.75223 -9.94862 -9.59334 -8.52039 -8.37331 -6.43156 0.20482 0.37592 1.29015 1.37387 1.46742 1.65593 2.10214 2.23167 2.27178 2.35252 2.73544 2.99128 3.31617 3.75601 3.97153 3.98815 4.07609 4.16239 4.24325 4.30131 4.40873 4.44912 4.46206 4.52171 4.54022 4.56861 4.57082 4.70361 4.73313 4.79395 4.83950 4.98568 5.12728 5.19829 5.21575 5.29814 5.31814 5.35673 5.37862 5.45211 5.62941 5.79103 5.97716 6.12032 6.28267 6.59179 6.60925 7.11920 7.23483 7.58789 8.77673 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002578 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.373514 B =10858.518463 C =12045.089896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.049 3.951 4 O -0.321 6.321 5 C 0.070 3.930 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.163 3.837 9 N -0.672 5.672 10 C 0.697 3.303 11 O -0.619 6.619 12 N -0.709 5.709 13 C 0.261 3.739 14 H 0.025 0.975 15 C -0.156 4.156 16 C -0.531 4.531 17 H 0.059 0.941 18 C 0.029 3.971 19 N -0.933 5.933 20 Si 0.938 3.062 21 H -0.260 1.260 22 H -0.293 1.293 23 H -0.262 1.262 24 C -0.191 4.191 25 C 0.109 3.891 26 O -0.323 6.323 27 C 0.015 3.985 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.422 0.578 38 H 0.407 0.593 39 H 0.041 0.959 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.270 0.730 43 H 0.166 0.834 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 -27.263 -3.167 27.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.026 4.026 4 O -0.236 6.236 5 C 0.024 3.976 6 C -0.170 4.170 7 C -0.156 4.156 8 C 0.067 3.933 9 N -0.322 5.322 10 C 0.398 3.602 11 O -0.499 6.499 12 N -0.362 5.362 13 C 0.155 3.845 14 H 0.043 0.957 15 C -0.214 4.214 16 C -0.569 4.569 17 H 0.077 0.923 18 C -0.171 4.171 19 N -0.572 5.572 20 Si 0.766 3.234 21 H -0.186 1.186 22 H -0.221 1.221 23 H -0.186 1.186 24 C -0.212 4.212 25 C 0.062 3.938 26 O -0.237 6.237 27 C -0.079 4.079 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.169 0.831 36 H 0.142 0.858 37 H 0.261 0.739 38 H 0.242 0.758 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.183 0.817 44 H 0.081 0.919 45 H 0.137 0.863 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.774 -27.481 -2.651 27.747 hybrid contribution 0.332 1.223 0.160 1.278 sum -2.442 -26.257 -2.492 26.488 Atomic orbital electron populations 1.21691 0.92919 1.03220 1.02602 1.21469 0.96996 0.93680 1.03441 1.23118 0.77471 1.00074 1.01956 1.86110 1.22344 1.25779 1.89380 1.18324 0.89512 0.85348 1.04428 1.21051 1.00776 0.90262 1.04920 1.21063 0.93861 0.98144 1.02544 1.17263 0.91391 0.83844 1.00803 1.42373 1.28404 1.07487 1.53922 1.16123 0.83866 0.80888 0.79370 1.90852 1.22373 1.83053 1.53645 1.45127 1.23622 1.10158 1.57251 1.18657 0.93811 0.83335 0.88663 0.95741 1.22370 1.01971 0.99363 0.97713 1.21224 1.26530 0.89605 1.19588 0.92308 1.25530 0.97524 0.95015 0.98987 1.69969 1.45034 0.98338 1.43813 0.86019 0.79876 0.77156 0.80397 1.18589 1.22074 1.18627 1.20832 1.01297 0.88852 1.10248 1.18017 0.88285 0.86010 1.01443 1.86156 1.20692 1.27830 1.88984 1.23380 0.76647 1.05515 1.02341 0.90772 0.92157 0.91913 0.90958 0.91232 0.91789 0.91307 0.83120 0.85799 0.73929 0.75797 0.94030 0.93713 0.91590 0.92044 0.81676 0.91937 0.86277 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.12 -1.66 6.30 30.60 0.19 -1.46 16 3 C 0.05 0.87 4.74 71.98 0.34 1.21 16 4 O -0.32 -8.07 9.92 -80.37 -0.80 -8.87 16 5 C 0.07 1.86 6.70 22.56 0.15 2.01 16 6 C -0.15 -4.00 9.03 22.33 0.20 -3.80 16 7 C -0.14 -4.19 8.69 22.40 0.19 -4.00 16 8 C 0.16 4.58 6.30 38.09 0.24 4.82 16 9 N -0.67 -18.59 5.35 -317.11 -1.70 -20.28 16 10 C 0.70 25.91 8.37 179.06 1.50 27.41 16 11 O -0.62 -27.76 13.44 -4.01 -0.05 -27.81 16 12 N -0.71 -27.00 5.07 -461.41 -2.34 -29.34 16 13 C 0.26 12.16 2.15 44.25 0.10 12.25 16 14 H 0.02 1.28 6.64 -2.39 -0.02 1.27 16 15 C -0.16 -6.71 8.96 71.98 0.65 -6.07 16 16 C -0.53 -28.38 9.31 25.60 0.24 -28.14 16 17 H 0.06 3.32 7.98 -2.91 -0.02 3.30 16 18 C 0.03 1.63 5.45 84.65 0.46 2.09 16 19 N -0.93 -55.22 13.96 21.45 0.30 -54.92 16 20 Si 0.94 44.28 24.37 68.60 1.67 45.95 16 21 H -0.26 -11.54 6.86 99.48 0.68 -10.86 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 24 C -0.19 -4.39 8.95 22.47 0.20 -4.19 16 25 C 0.11 2.75 6.70 22.55 0.15 2.90 16 26 O -0.32 -7.42 10.28 -79.52 -0.82 -8.24 16 27 C 0.02 0.20 9.81 113.37 1.11 1.31 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.10 7.66 -2.39 -0.02 1.08 16 34 H 0.07 1.10 7.66 -2.39 -0.02 1.09 16 35 H 0.15 3.31 6.29 -2.91 -0.02 3.29 16 36 H 0.12 4.46 6.22 -2.91 -0.02 4.45 16 37 H 0.42 8.34 8.84 -92.71 -0.82 7.52 16 38 H 0.41 13.13 8.56 -92.71 -0.79 12.33 16 39 H 0.04 1.83 3.25 -2.39 -0.01 1.82 16 40 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.07 2.63 8.14 -2.38 -0.02 2.61 16 42 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.17 2.68 6.30 -2.91 -0.02 2.66 16 44 H 0.06 0.74 7.67 -2.39 -0.02 0.72 16 45 H 0.12 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.07 0.71 7.65 -2.39 -0.02 0.69 16 Total: -1.00 -71.78 372.44 2.03 -69.75 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: -0.67 Total: 28.15 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 6.44 Total: 5.60 kcal Atomic # 7 Polarization: -100.80 SS G_CDS: -3.74 Total: -104.54 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.67 Total: -44.91 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.67 Total: 45.95 kcal Total: -71.78 2.03 -69.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599930251.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.447 kcal (2) G-P(sol) polarization free energy of solvation -71.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds