Wall clock time and date at job start Tue Mar 31 2020 15:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46974 * 2 1 4 4 O 1.42897 * 109.46944 * 180.02562 * 3 2 1 5 5 C 1.36075 * 116.99835 * 180.02562 * 4 3 2 6 6 C 1.38547 * 120.00245 * 359.72274 * 5 4 3 7 7 C 1.38193 * 120.06743 * 179.76484 * 6 5 4 8 8 C 1.38833 * 120.07249 * 0.51329 * 7 6 5 9 9 N 1.40144 * 119.99817 * 179.76138 * 8 7 6 10 10 C 1.34773 * 119.99417 * 33.28816 * 9 8 7 11 11 O 1.21593 * 120.00715 * 5.31336 * 10 9 8 12 12 N 1.34780 * 120.00112 * 185.31536 * 10 9 8 13 13 C 1.46490 * 120.00566 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47372 * 179.97438 * 13 12 10 15 15 C 1.50705 * 109.47259 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99594 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00145 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99556 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47161 * 59.99949 * 19 17 15 21 21 H 1.48500 * 109.46985 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47164 * 299.99773 * 19 17 15 23 23 C 1.38800 * 120.00856 * 359.74522 * 8 7 6 24 24 C 1.38511 * 119.93234 * 359.97438 * 23 8 7 25 25 O 1.35995 * 120.03448 * 180.02562 * 24 23 8 26 26 C 1.42897 * 117.00407 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47135 * 299.99530 * 1 2 3 28 28 H 1.08999 * 109.47406 * 59.99521 * 1 2 3 29 29 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47135 * 240.00470 * 2 1 3 31 31 H 1.08996 * 109.47657 * 120.00021 * 2 1 3 32 32 H 1.08996 * 109.46945 * 300.00456 * 3 2 1 33 33 H 1.08999 * 109.46806 * 60.00269 * 3 2 1 34 34 H 1.08005 * 119.96794 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.96402 * 180.22878 * 7 6 5 36 36 H 0.96998 * 120.00095 * 213.28321 * 9 8 7 37 37 H 0.97006 * 119.99595 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47155 * 300.00173 * 13 12 10 39 39 H 1.09001 * 109.47005 * 59.99894 * 13 12 10 40 40 H 1.09001 * 109.47148 * 300.00210 * 14 13 12 41 41 H 1.09000 * 109.47001 * 60.00535 * 14 13 12 42 42 H 0.97003 * 119.99540 * 180.02562 * 18 17 15 43 43 H 1.07999 * 120.03677 * 180.02562 * 23 8 7 44 44 H 1.08996 * 109.47130 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.46386 * 299.99741 * 26 25 24 46 46 H 1.09002 * 109.47296 * 59.99647 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0867 2.6550 -0.0001 6 6 3.3321 3.8170 -0.0049 7 6 3.9580 5.0490 0.0004 8 6 5.3443 5.1251 -0.0001 9 7 5.9774 6.3754 0.0003 10 6 5.4116 7.4169 0.6417 11 8 4.4031 7.2503 1.3003 12 7 5.9636 8.6433 0.5532 13 6 5.3484 9.7756 1.2499 14 6 6.1665 11.0415 0.9875 15 6 5.5339 12.2062 1.7048 16 1 4.6381 12.0581 2.2897 17 6 6.0987 13.4608 1.6143 18 7 7.1898 13.6408 0.9024 19 14 5.3150 14.9042 2.5039 20 1 5.2843 14.6289 3.9629 21 1 6.1090 16.1329 2.2491 22 1 3.9288 15.0982 2.0075 23 6 6.1033 3.9630 -0.0007 24 6 5.4762 2.7280 -0.0002 25 8 6.2178 1.5880 -0.0003 26 6 7.6388 1.7384 -0.0015 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.2536 3.7599 -0.0086 35 1 3.3682 5.9537 0.0004 36 1 6.8228 6.4910 -0.4610 37 1 6.7683 8.7762 0.0281 38 1 4.3312 9.9177 0.8848 39 1 5.3250 9.5740 2.3209 40 1 7.1835 10.8991 1.3530 41 1 6.1901 11.2433 -0.0834 42 1 7.5873 14.5234 0.8390 43 1 7.1817 4.0216 -0.0007 44 1 8.1083 0.7548 -0.0009 45 1 7.9453 2.2873 -0.8920 46 1 7.9468 2.2881 0.8880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599930790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:32 Heat of formation + Delta-G solvation = -89.815067 kcal Electronic energy + Delta-G solvation = -26125.107271 eV Core-core repulsion = 22208.410915 eV Total energy + Delta-G solvation = -3916.696356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90499 -39.83169 -38.70510 -37.20706 -34.97541 -34.49437 -33.77699 -32.82782 -30.41524 -29.98622 -28.86541 -27.21655 -26.61720 -24.78751 -23.04675 -22.57445 -21.40941 -21.03231 -20.61518 -18.68690 -18.34123 -17.77900 -16.59862 -16.51511 -16.36777 -16.00567 -15.78523 -15.31151 -14.88987 -14.63296 -14.54267 -14.48974 -14.28349 -13.75699 -13.62441 -13.26713 -12.98506 -12.72887 -12.59448 -12.41790 -12.30636 -11.90978 -11.70380 -11.54633 -11.41086 -11.24291 -11.11711 -11.04316 -10.90311 -10.67836 -10.37505 -10.06192 -9.74543 -9.59675 -9.31595 -8.74374 -8.57083 -8.39109 -7.52269 -6.11906 -4.14834 1.15214 1.36999 2.77793 3.03373 3.12174 3.29752 3.30348 3.33769 3.37294 3.76478 4.34018 4.47849 4.53887 4.56328 4.70077 4.82270 4.89285 4.94184 4.95471 5.09728 5.11321 5.18858 5.24633 5.25275 5.28868 5.34594 5.39181 5.60047 5.66351 5.72284 5.84933 6.10666 6.25248 6.29885 6.32436 6.36606 6.69934 6.80202 6.85700 6.91447 7.10382 7.47038 7.51008 7.58043 7.86428 8.16086 8.28687 8.77910 8.91054 9.50041 10.99624 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.002018 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.893913 B =13873.906730 C =15124.845176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.057 3.943 4 O -0.308 6.308 5 C 0.078 3.922 6 C -0.150 4.150 7 C -0.115 4.115 8 C 0.181 3.819 9 N -0.691 5.691 10 C 0.697 3.303 11 O -0.579 6.579 12 N -0.732 5.732 13 C 0.139 3.861 14 C 0.013 3.987 15 C -0.522 4.522 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.205 4.205 24 C 0.117 3.883 25 O -0.306 6.306 26 C 0.026 3.974 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.136 0.864 35 H 0.143 0.857 36 H 0.405 0.595 37 H 0.395 0.605 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.137 0.863 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.766 -27.076 -5.532 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.019 4.019 4 O -0.222 6.222 5 C 0.032 3.968 6 C -0.170 4.170 7 C -0.136 4.136 8 C 0.085 3.915 9 N -0.339 5.339 10 C 0.397 3.603 11 O -0.456 6.456 12 N -0.385 5.385 13 C 0.016 3.984 14 C -0.025 4.025 15 C -0.561 4.561 16 H 0.078 0.922 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.726 3.274 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.227 4.227 24 C 0.071 3.929 25 O -0.219 6.219 26 C -0.069 4.069 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.154 0.846 35 H 0.161 0.839 36 H 0.240 0.760 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.155 0.845 44 H 0.117 0.883 45 H 0.073 0.927 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.545 -27.345 -4.959 28.160 hybrid contribution 0.642 1.425 0.006 1.563 sum -3.903 -25.920 -4.953 26.676 Atomic orbital electron populations 1.21695 0.94346 1.02418 1.02291 1.21459 0.95882 0.94978 1.03650 1.22857 0.78964 0.98656 1.01384 1.86124 1.20606 1.26005 1.89484 1.18100 0.88907 0.85097 1.04659 1.20943 0.99921 0.90885 1.05237 1.20968 0.93072 0.98225 1.01358 1.17097 0.91431 0.83438 0.99508 1.42717 1.26330 1.07942 1.56897 1.16050 0.83581 0.80615 0.80036 1.90915 1.25941 1.83704 1.45016 1.45584 1.31312 1.06988 1.54602 1.21671 0.97223 0.84101 0.95387 1.19333 0.95428 0.89894 0.97831 1.20999 1.11446 0.92708 1.30947 0.92234 1.24995 0.94931 0.99007 0.95348 1.69946 1.19995 1.23189 1.40145 0.86556 0.79318 0.81363 0.80197 1.20103 1.21248 1.20087 1.20663 1.00074 0.90062 1.11905 1.17818 0.88044 0.85365 1.01673 1.86170 1.18560 1.28069 1.89139 1.23057 0.78834 1.03724 1.01310 0.92307 0.92358 0.91832 0.90910 0.90878 0.92163 0.92083 0.84607 0.83895 0.75993 0.77144 0.92491 0.92530 0.95914 0.95885 0.92783 0.84528 0.88329 0.92728 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.86 6.30 -26.73 -0.17 -1.03 16 3 C 0.06 0.50 4.74 37.16 0.18 0.68 16 4 O -0.31 -3.80 9.92 -34.58 -0.34 -4.14 16 5 C 0.08 1.02 6.70 -39.13 -0.26 0.75 16 6 C -0.15 -1.88 9.03 -39.48 -0.36 -2.23 16 7 C -0.12 -1.65 8.65 -39.38 -0.34 -1.99 16 8 C 0.18 2.45 6.28 -83.63 -0.53 1.92 16 9 N -0.69 -9.00 5.36 -14.20 -0.08 -9.07 16 10 C 0.70 11.86 8.30 -86.92 -0.72 11.14 16 11 O -0.58 -11.93 14.03 5.28 0.07 -11.85 16 12 N -0.73 -12.39 5.56 -65.23 -0.36 -12.76 16 13 C 0.14 2.89 5.61 -4.05 -0.02 2.87 16 14 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 15 C -0.52 -14.29 9.11 -34.44 -0.31 -14.61 16 16 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 19 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 C -0.21 -2.39 8.95 -39.27 -0.35 -2.74 16 24 C 0.12 1.48 6.70 -39.14 -0.26 1.22 16 25 O -0.31 -3.64 10.28 -34.32 -0.35 -3.99 16 26 C 0.03 0.19 9.81 101.05 0.99 1.18 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.47 7.65 -51.93 -0.40 0.08 16 33 H 0.06 0.51 7.67 -51.93 -0.40 0.11 16 34 H 0.14 1.38 6.29 -52.48 -0.33 1.05 16 35 H 0.14 2.26 6.41 -52.49 -0.34 1.93 16 36 H 0.40 3.85 8.83 -40.82 -0.36 3.49 16 37 H 0.40 5.63 8.49 -40.82 -0.35 5.28 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.14 1.23 6.29 -52.49 -0.33 0.90 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 46 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 LS Contribution 384.36 15.07 5.79 5.79 Total: -1.00 -33.51 384.36 -8.64 -42.15 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.06 Total: 4.33 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.03 Total: -1.57 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.30 Total: -46.89 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: -0.62 Total: -19.98 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.51 -8.64 -42.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599930790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.665 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds