Wall clock time and date at job start Tue Mar 31 2020 15:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.46974 * 2 1 4 4 O 1.42897 * 109.46944 * 180.02562 * 3 2 1 5 5 C 1.36075 * 116.99835 * 180.02562 * 4 3 2 6 6 C 1.38547 * 120.00245 * 359.72274 * 5 4 3 7 7 C 1.38193 * 120.06743 * 179.76484 * 6 5 4 8 8 C 1.38833 * 120.07249 * 0.51329 * 7 6 5 9 9 N 1.40144 * 119.99817 * 179.76138 * 8 7 6 10 10 C 1.34773 * 119.99417 * 33.28816 * 9 8 7 11 11 O 1.21593 * 120.00715 * 5.31336 * 10 9 8 12 12 N 1.34780 * 120.00112 * 185.31536 * 10 9 8 13 13 C 1.46490 * 120.00566 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47372 * 179.97438 * 13 12 10 15 15 C 1.50705 * 109.47259 * 180.02562 * 14 13 12 16 16 H 1.08003 * 119.99594 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00145 * 180.02562 * 15 14 13 18 18 N 1.31515 * 119.99556 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 119.99965 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47161 * 59.99949 * 19 17 15 21 21 H 1.48500 * 109.46985 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.47164 * 299.99773 * 19 17 15 23 23 C 1.38800 * 120.00856 * 359.74522 * 8 7 6 24 24 C 1.38511 * 119.93234 * 359.97438 * 23 8 7 25 25 O 1.35995 * 120.03448 * 180.02562 * 24 23 8 26 26 C 1.42897 * 117.00407 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47135 * 299.99530 * 1 2 3 28 28 H 1.08999 * 109.47406 * 59.99521 * 1 2 3 29 29 H 1.08997 * 109.47003 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47135 * 240.00470 * 2 1 3 31 31 H 1.08996 * 109.47657 * 120.00021 * 2 1 3 32 32 H 1.08996 * 109.46945 * 300.00456 * 3 2 1 33 33 H 1.08999 * 109.46806 * 60.00269 * 3 2 1 34 34 H 1.08005 * 119.96794 * 0.02562 * 6 5 4 35 35 H 1.07995 * 119.96402 * 180.22878 * 7 6 5 36 36 H 0.96998 * 120.00095 * 213.28321 * 9 8 7 37 37 H 0.97006 * 119.99595 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.47155 * 300.00173 * 13 12 10 39 39 H 1.09001 * 109.47005 * 59.99894 * 13 12 10 40 40 H 1.09001 * 109.47148 * 300.00210 * 14 13 12 41 41 H 1.09000 * 109.47001 * 60.00535 * 14 13 12 42 42 H 0.97003 * 119.99540 * 180.02562 * 18 17 15 43 43 H 1.07999 * 120.03677 * 180.02562 * 23 8 7 44 44 H 1.08996 * 109.47130 * 179.97438 * 26 25 24 45 45 H 1.09004 * 109.46386 * 299.99741 * 26 25 24 46 46 H 1.09002 * 109.47296 * 59.99647 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0867 2.6550 -0.0001 6 6 3.3321 3.8170 -0.0049 7 6 3.9580 5.0490 0.0004 8 6 5.3443 5.1251 -0.0001 9 7 5.9774 6.3754 0.0003 10 6 5.4116 7.4169 0.6417 11 8 4.4031 7.2503 1.3003 12 7 5.9636 8.6433 0.5532 13 6 5.3484 9.7756 1.2499 14 6 6.1665 11.0415 0.9875 15 6 5.5339 12.2062 1.7048 16 1 4.6381 12.0581 2.2897 17 6 6.0987 13.4608 1.6143 18 7 7.1898 13.6408 0.9024 19 14 5.3150 14.9042 2.5039 20 1 5.2843 14.6289 3.9629 21 1 6.1090 16.1329 2.2491 22 1 3.9288 15.0982 2.0075 23 6 6.1033 3.9630 -0.0007 24 6 5.4762 2.7280 -0.0002 25 8 6.2178 1.5880 -0.0003 26 6 7.6388 1.7384 -0.0015 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 2.2536 3.7599 -0.0086 35 1 3.3682 5.9537 0.0004 36 1 6.8228 6.4910 -0.4610 37 1 6.7683 8.7762 0.0281 38 1 4.3312 9.9177 0.8848 39 1 5.3250 9.5740 2.3209 40 1 7.1835 10.8991 1.3530 41 1 6.1901 11.2433 -0.0834 42 1 7.5873 14.5234 0.8390 43 1 7.1817 4.0216 -0.0007 44 1 8.1083 0.7548 -0.0009 45 1 7.9453 2.2873 -0.8920 46 1 7.9468 2.2881 0.8880 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599930790.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:31 Heat of formation + Delta-G solvation = -111.651734 kcal Electronic energy + Delta-G solvation = -26126.054180 eV Core-core repulsion = 22208.410915 eV Total energy + Delta-G solvation = -3917.643265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94653 -41.01012 -39.54146 -38.28125 -36.56788 -35.52260 -34.85993 -34.47558 -31.67052 -31.31783 -29.96121 -27.95250 -27.39642 -26.59451 -24.06950 -23.59344 -22.74851 -22.13103 -21.87326 -19.67320 -19.58525 -18.76870 -18.40646 -17.52267 -17.31383 -17.10312 -16.66272 -16.48833 -16.47343 -15.95144 -15.82534 -15.35272 -15.22918 -15.07992 -14.90715 -14.29384 -14.23279 -13.85306 -13.64111 -13.40002 -13.22022 -12.98103 -12.93620 -12.64297 -12.53490 -12.44031 -12.27755 -12.22712 -12.12583 -11.84834 -11.66764 -11.57126 -11.49840 -11.24670 -10.81468 -10.59064 -10.06416 -9.62055 -8.53357 -8.23267 -6.33210 0.18558 0.34775 1.42501 1.44906 1.51430 1.56957 2.00825 2.22342 2.33720 2.41862 2.72014 3.11806 3.21444 3.73720 3.97147 3.97398 4.05249 4.14527 4.21155 4.29502 4.38236 4.44015 4.46620 4.51195 4.52074 4.54988 4.57002 4.71220 4.78513 4.83719 4.87058 5.12976 5.18608 5.19941 5.22885 5.28301 5.34445 5.37535 5.49549 5.60070 5.74162 5.79231 5.96224 6.11447 6.17351 6.59530 6.79585 6.98599 7.35835 7.45509 8.88211 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.002018 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.893913 B =13873.906730 C =15124.845176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.119 4.119 3 C 0.049 3.951 4 O -0.322 6.322 5 C 0.069 3.931 6 C -0.149 4.149 7 C -0.134 4.134 8 C 0.163 3.837 9 N -0.671 5.671 10 C 0.699 3.301 11 O -0.616 6.616 12 N -0.725 5.725 13 C 0.160 3.840 14 C 0.023 3.977 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.008 3.992 18 N -0.925 5.925 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.269 1.269 23 C -0.192 4.192 24 C 0.110 3.890 25 O -0.323 6.323 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.153 0.847 35 H 0.122 0.878 36 H 0.424 0.576 37 H 0.410 0.590 38 H 0.047 0.953 39 H 0.046 0.954 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.265 0.735 43 H 0.166 0.834 44 H 0.119 0.881 45 H 0.069 0.931 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.558 -28.047 -5.614 28.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.026 4.026 4 O -0.237 6.237 5 C 0.023 3.977 6 C -0.169 4.169 7 C -0.155 4.155 8 C 0.068 3.932 9 N -0.320 5.320 10 C 0.399 3.601 11 O -0.496 6.496 12 N -0.379 5.379 13 C 0.036 3.964 14 C -0.015 4.015 15 C -0.585 4.585 16 H 0.078 0.922 17 C -0.191 4.191 18 N -0.565 5.565 19 Si 0.788 3.212 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.194 1.194 23 C -0.214 4.214 24 C 0.064 3.936 25 O -0.237 6.237 26 C -0.079 4.079 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.170 0.830 35 H 0.140 0.860 36 H 0.262 0.738 37 H 0.246 0.754 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.029 0.971 41 H 0.029 0.971 42 H 0.074 0.926 43 H 0.183 0.817 44 H 0.137 0.863 45 H 0.088 0.912 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.297 -28.358 -5.077 29.127 hybrid contribution 0.603 1.575 -0.002 1.687 sum -3.694 -26.783 -5.078 27.509 Atomic orbital electron populations 1.21688 0.92902 1.03213 1.02626 1.21470 0.97012 0.93727 1.03418 1.23123 0.77416 1.00060 1.02008 1.86116 1.22397 1.25808 1.89368 1.18332 0.89513 0.85394 1.04436 1.21046 1.00836 0.90215 1.04755 1.20917 0.93633 0.98068 1.02909 1.17242 0.91437 0.83836 1.00696 1.42389 1.26692 1.06899 1.56049 1.16078 0.83106 0.81011 0.79893 1.90896 1.27665 1.84317 1.46717 1.45220 1.31780 1.06294 1.54635 1.21137 0.96250 0.84001 0.95040 1.19141 0.95002 0.90825 0.96514 1.21434 1.11726 0.94061 1.31306 0.92248 1.25848 0.95413 1.01796 0.96070 1.70048 1.21175 1.23959 1.41286 0.85517 0.78579 0.77943 0.79123 1.19422 1.20665 1.19370 1.20824 1.01333 0.88870 1.10342 1.18030 0.88307 0.86014 1.01293 1.86159 1.20725 1.27895 1.88949 1.23385 0.76612 1.05541 1.02354 0.92127 0.91881 0.90822 0.90985 0.91275 0.91216 0.91728 0.82981 0.86001 0.73772 0.75431 0.93423 0.93565 0.97145 0.97127 0.92584 0.81674 0.86293 0.91240 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.66 16 2 C -0.12 -1.57 6.30 30.60 0.19 -1.38 16 3 C 0.05 0.82 4.74 71.99 0.34 1.17 16 4 O -0.32 -7.77 9.92 -80.44 -0.80 -8.57 16 5 C 0.07 1.76 6.70 22.56 0.15 1.91 16 6 C -0.15 -3.70 9.03 22.33 0.20 -3.50 16 7 C -0.13 -3.86 8.65 22.40 0.19 -3.67 16 8 C 0.16 4.27 6.28 38.09 0.24 4.51 16 9 N -0.67 -16.72 5.36 -317.09 -1.70 -18.41 16 10 C 0.70 23.55 8.30 179.05 1.49 25.04 16 11 O -0.62 -25.72 14.03 -4.01 -0.06 -25.78 16 12 N -0.72 -24.30 5.56 -478.55 -2.66 -26.96 16 13 C 0.16 6.72 5.61 86.38 0.48 7.20 16 14 C 0.02 1.12 5.09 29.85 0.15 1.27 16 15 C -0.55 -30.11 9.11 25.60 0.23 -29.88 16 16 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 17 C 0.01 0.42 5.46 84.66 0.46 0.89 16 18 N -0.93 -53.53 13.29 21.45 0.28 -53.24 16 19 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 23 C -0.19 -4.15 8.95 22.47 0.20 -3.94 16 24 C 0.11 2.65 6.70 22.55 0.15 2.80 16 25 O -0.32 -7.17 10.28 -79.53 -0.82 -7.98 16 26 C 0.02 0.19 9.81 113.37 1.11 1.30 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 1.03 7.65 -2.39 -0.02 1.02 16 33 H 0.06 1.04 7.67 -2.39 -0.02 1.02 16 34 H 0.15 3.07 6.29 -2.91 -0.02 3.05 16 35 H 0.12 4.01 6.41 -2.91 -0.02 3.99 16 36 H 0.42 7.19 8.83 -92.71 -0.82 6.37 16 37 H 0.41 11.32 8.49 -92.70 -0.79 10.53 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.01 0.53 8.14 -2.39 -0.02 0.52 16 42 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.17 2.47 6.29 -2.91 -0.02 2.45 16 44 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 46 H 0.06 0.69 7.66 -2.39 -0.02 0.67 16 Total: -1.00 -72.06 384.36 2.00 -70.06 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -0.60 Total: 22.59 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 6.32 Total: 3.06 kcal Atomic # 7 Polarization: -94.54 SS G_CDS: -4.07 Total: -98.62 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -1.67 Total: -42.33 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -72.06 2.00 -70.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599930790.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.590 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds