Wall clock time and date at job start Tue Mar 31 2020 15:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00274 * 2 1 4 4 C 1.52998 * 109.47457 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47358 * 64.99619 * 4 3 2 6 6 C 1.46502 * 120.00095 * 270.00107 * 5 4 3 7 7 C 1.50696 * 109.47524 * 275.88645 * 6 5 4 8 8 H 1.08002 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00549 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00120 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99474 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46666 * 90.00499 * 11 9 7 13 13 H 1.48502 * 109.46654 * 210.00215 * 11 9 7 14 14 H 1.48490 * 109.47423 * 330.00411 * 11 9 7 15 15 C 1.34773 * 119.99930 * 90.00142 * 5 4 3 16 16 O 1.21512 * 120.00380 * 4.80689 * 15 5 4 17 17 C 1.48169 * 119.99980 * 184.80250 * 15 5 4 18 18 C 1.39965 * 120.88989 * 132.40272 * 17 15 5 19 19 C 1.37977 * 119.13527 * 180.02562 * 18 17 15 20 20 N 1.31904 * 120.97719 * 359.74537 * 19 18 17 21 21 C 1.32174 * 121.96879 * 0.52999 * 20 19 18 22 22 O 1.35686 * 119.62367 * 179.74644 * 21 20 19 23 23 C 1.42904 * 116.99866 * 359.72949 * 22 21 20 24 24 C 1.53002 * 109.46817 * 269.99730 * 23 22 21 25 25 C 1.53003 * 109.47021 * 149.99744 * 23 22 21 26 26 C 1.38889 * 120.75712 * 359.47002 * 21 20 19 27 27 H 1.08994 * 109.47175 * 300.00249 * 1 2 3 28 28 H 1.09004 * 109.46999 * 60.00245 * 1 2 3 29 29 H 1.09004 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47477 * 59.99597 * 3 2 1 31 31 H 1.09005 * 109.46642 * 299.99945 * 3 2 1 32 32 H 1.09003 * 109.46567 * 304.99909 * 4 3 2 33 33 H 1.09001 * 109.47315 * 184.99847 * 4 3 2 34 34 H 1.09004 * 109.47198 * 35.88619 * 6 5 4 35 35 H 1.09002 * 109.47309 * 155.88367 * 6 5 4 36 36 H 0.97006 * 119.99571 * 179.97438 * 10 9 7 37 37 H 1.08002 * 120.43369 * 0.02562 * 18 17 15 38 38 H 1.08005 * 119.51229 * 180.02562 * 19 18 17 39 39 H 1.08993 * 109.47304 * 29.99595 * 23 22 21 40 40 H 1.09000 * 109.47198 * 59.99903 * 24 23 22 41 41 H 1.09006 * 109.46838 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.47190 * 299.99698 * 24 23 22 43 43 H 1.08999 * 109.47042 * 60.00202 * 25 23 22 44 44 H 1.09009 * 109.46927 * 179.97438 * 25 23 22 45 45 H 1.08992 * 109.47103 * 299.99472 * 25 23 22 46 46 H 1.07999 * 120.53472 * 180.27700 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8922 -1.3426 7 6 5.4507 -1.3108 -0.8084 8 1 6.1405 -0.5664 -0.4392 9 6 5.8016 -2.6441 -0.7919 10 7 6.9760 -3.0094 -0.3261 11 14 4.6086 -3.9317 -1.4312 12 1 4.8410 -4.1445 -2.8824 13 1 4.8216 -5.2085 -0.7033 14 1 3.2152 -3.4657 -1.2161 15 6 4.2616 1.3336 -2.3217 16 8 4.2388 2.5444 -2.2226 17 6 4.6037 0.7028 -3.6181 18 6 4.0027 1.1323 -4.8070 19 6 4.3477 0.5190 -5.9938 20 7 5.2346 -0.4569 -6.0209 21 6 5.8233 -0.8983 -4.9229 22 8 6.7252 -1.9087 -5.0052 23 6 6.9810 -2.4457 -6.3045 24 6 6.0132 -3.5983 -6.5795 25 6 8.4200 -2.9616 -6.3689 26 6 5.5334 -0.3360 -3.6864 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 3.3180 -1.3640 -0.7546 35 1 4.0157 -1.2013 -2.3840 36 1 7.2226 -3.9475 -0.3142 37 1 3.2784 1.9333 -4.7955 38 1 3.8880 0.8458 -6.9149 39 1 6.8405 -1.6667 -7.0538 40 1 4.9880 -3.2308 -6.5336 41 1 6.2086 -4.0083 -7.5705 42 1 6.1537 -4.3774 -5.8302 43 1 8.5605 -3.7407 -5.6196 44 1 8.6150 -3.3717 -7.3599 45 1 9.1095 -2.1405 -6.1730 46 1 6.0198 -0.6965 -2.7921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610742665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:10 Heat of formation + Delta-G solvation = -74.922259 kcal Electronic energy + Delta-G solvation = -28692.318943 eV Core-core repulsion = 24776.268387 eV Total energy + Delta-G solvation = -3916.050556 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 8.04 seconds Orbital eigenvalues (eV) -40.52268 -39.25018 -37.81988 -37.33706 -35.19586 -33.04292 -32.75199 -32.26505 -30.07553 -29.55622 -27.75192 -27.12686 -26.18574 -24.54696 -23.06633 -22.55426 -22.41501 -21.03429 -19.21143 -17.62369 -17.11527 -16.62743 -16.47337 -15.90680 -15.77039 -15.54482 -15.33048 -15.13451 -14.68402 -14.26012 -14.20366 -14.02322 -13.68405 -13.42003 -13.02465 -12.92801 -12.57661 -12.24110 -12.16597 -12.11103 -11.92284 -11.83047 -11.75903 -11.62430 -11.30368 -11.02767 -10.85955 -10.75606 -10.62184 -10.55698 -10.24535 -9.79809 -9.61076 -9.49331 -9.40019 -8.99325 -8.68120 -8.06919 -7.84674 -6.21379 -4.22785 1.28829 1.55842 3.15239 3.23828 3.31098 3.34452 3.40260 3.66186 4.02139 4.18061 4.31444 4.55578 4.95789 5.03949 5.10472 5.13922 5.27095 5.32151 5.37027 5.38106 5.42801 5.53446 5.53751 5.58816 5.59761 5.64377 5.73206 5.85997 5.88769 5.94559 5.96211 6.16134 6.24192 6.29216 6.30448 6.33210 6.47478 6.60198 6.84449 6.93493 7.24375 7.35612 7.47251 7.68790 8.01093 8.16394 8.38109 8.67409 8.83900 9.38127 10.89999 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.005489 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.689533 B = 5100.150978 C = 6424.337278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.047 3.953 4 C 0.121 3.879 5 N -0.570 5.570 6 C 0.202 3.798 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.088 3.912 10 N -0.882 5.882 11 Si 0.860 3.140 12 H -0.268 1.268 13 H -0.283 1.283 14 H -0.261 1.261 15 C 0.561 3.439 16 O -0.560 6.560 17 C -0.046 4.046 18 C -0.173 4.173 19 C 0.120 3.880 20 N -0.537 5.537 21 C 0.315 3.685 22 O -0.290 6.290 23 C 0.081 3.919 24 C -0.168 4.168 25 C -0.151 4.151 26 C -0.145 4.145 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.048 0.952 35 H 0.032 0.968 36 H 0.267 0.733 37 H 0.136 0.864 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 2.956 -8.422 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.031 4.031 4 C -0.003 4.003 5 N -0.299 5.299 6 C 0.081 3.919 7 C -0.585 4.585 8 H 0.099 0.901 9 C -0.117 4.117 10 N -0.518 5.518 11 Si 0.686 3.314 12 H -0.194 1.194 13 H -0.209 1.209 14 H -0.185 1.185 15 C 0.348 3.652 16 O -0.441 6.441 17 C -0.056 4.056 18 C -0.194 4.194 19 C -0.035 4.035 20 N -0.261 5.261 21 C 0.136 3.864 22 O -0.197 6.197 23 C 0.024 3.976 24 C -0.226 4.226 25 C -0.208 4.208 26 C -0.165 4.165 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.113 0.887 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.154 0.846 38 H 0.175 0.825 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.682 2.689 -8.874 11.429 hybrid contribution -1.073 -0.326 0.265 1.152 sum -7.755 2.363 -8.609 11.825 Atomic orbital electron populations 1.22692 0.82047 1.02385 0.99364 1.88031 1.18792 1.27642 1.95248 1.23052 0.95091 0.84878 1.00031 1.21430 0.91010 1.00129 0.87703 1.47773 1.62885 1.09190 1.10010 1.20108 0.98633 0.75138 0.98025 1.21293 0.99891 0.93825 1.43465 0.90113 1.24773 0.94816 0.98098 0.94051 1.69879 1.20029 1.17335 1.44584 0.87057 0.82549 0.81759 0.80030 1.19364 1.20879 1.18519 1.18160 0.77089 0.86200 0.83755 1.90695 1.54767 1.13671 1.84924 1.20072 0.96331 0.94936 0.94267 1.21884 1.03037 1.02317 0.92131 1.22131 0.92970 0.91036 0.97396 1.67019 1.12052 1.16108 1.30968 1.19724 0.89100 0.88102 0.89493 1.86440 1.55226 1.46093 1.31902 1.22272 0.95333 0.95793 0.84168 1.22219 1.00016 0.98621 1.01741 1.21895 0.94373 1.02136 1.02370 1.22497 0.99348 0.95174 0.99527 0.94485 0.94569 0.89954 0.92732 0.93369 0.88651 0.88822 0.93357 0.95057 0.92270 0.84604 0.82522 0.89550 0.92118 0.91496 0.91940 0.91454 0.90919 0.91805 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.33 9.44 -35.23 -0.33 -6.67 16 3 C 0.05 0.72 6.28 37.16 0.23 0.96 16 4 C 0.12 2.14 5.87 -4.04 -0.02 2.12 16 5 N -0.57 -11.83 2.42 -176.05 -0.43 -12.26 16 6 C 0.20 4.61 3.60 -5.19 -0.02 4.59 16 7 C -0.55 -14.24 7.44 -34.44 -0.26 -14.50 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 10 N -0.88 -25.34 13.96 55.43 0.77 -24.56 16 11 Si 0.86 20.45 27.47 -169.99 -4.67 15.78 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -6.01 6.54 56.52 0.37 -5.64 16 15 C 0.56 11.74 7.31 -12.18 -0.09 11.65 16 16 O -0.56 -12.33 16.59 5.36 0.09 -12.24 16 17 C -0.05 -0.90 4.99 -104.67 -0.52 -1.42 16 18 C -0.17 -2.83 9.83 -39.03 -0.38 -3.21 16 19 C 0.12 1.79 11.17 -17.62 -0.20 1.59 16 20 N -0.54 -9.25 8.61 -13.38 -0.12 -9.36 16 21 C 0.31 6.20 7.45 -17.16 -0.13 6.07 16 22 O -0.29 -5.70 9.76 -18.76 -0.18 -5.88 16 23 C 0.08 1.23 3.11 -26.73 -0.08 1.15 16 24 C -0.17 -2.37 9.53 37.16 0.35 -2.02 16 25 C -0.15 -1.92 9.56 37.16 0.36 -1.56 16 26 C -0.15 -3.06 7.55 -38.84 -0.29 -3.36 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.10 1.73 8.07 -51.93 -0.42 1.31 16 33 H 0.09 1.59 7.36 -51.93 -0.38 1.21 16 34 H 0.05 1.14 6.09 -51.93 -0.32 0.82 16 35 H 0.03 0.73 4.81 -51.93 -0.25 0.48 16 36 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 37 H 0.14 1.95 8.06 -52.49 -0.42 1.52 16 38 H 0.16 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.09 1.27 6.97 -51.93 -0.36 0.91 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.19 4.56 4.81 -52.49 -0.25 4.31 16 LS Contribution 379.34 15.07 5.72 5.72 Total: -1.00 -31.11 379.34 -6.25 -37.37 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -7.07 Total: 6.28 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -0.04 Total: 5.84 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.23 Total: -46.19 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.43 Total: -24.79 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -4.67 Total: 15.78 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.11 -6.25 -37.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610742665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.556 kcal (2) G-P(sol) polarization free energy of solvation -31.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.04 seconds