Wall clock time and date at job start Tue Mar 31 2020 15:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00274 * 2 1 4 4 C 1.52998 * 109.47457 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47358 * 64.99619 * 4 3 2 6 6 C 1.46502 * 120.00095 * 270.00107 * 5 4 3 7 7 C 1.50696 * 109.47524 * 275.88645 * 6 5 4 8 8 H 1.08002 * 119.99562 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00549 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00120 * 179.97438 * 9 7 6 11 11 Si 1.86808 * 119.99474 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46666 * 90.00499 * 11 9 7 13 13 H 1.48502 * 109.46654 * 210.00215 * 11 9 7 14 14 H 1.48490 * 109.47423 * 330.00411 * 11 9 7 15 15 C 1.34773 * 119.99930 * 90.00142 * 5 4 3 16 16 O 1.21512 * 120.00380 * 4.80689 * 15 5 4 17 17 C 1.48169 * 119.99980 * 184.80250 * 15 5 4 18 18 C 1.39965 * 120.88989 * 132.40272 * 17 15 5 19 19 C 1.37977 * 119.13527 * 180.02562 * 18 17 15 20 20 N 1.31904 * 120.97719 * 359.74537 * 19 18 17 21 21 C 1.32174 * 121.96879 * 0.52999 * 20 19 18 22 22 O 1.35686 * 119.62367 * 179.74644 * 21 20 19 23 23 C 1.42904 * 116.99866 * 359.72949 * 22 21 20 24 24 C 1.53002 * 109.46817 * 269.99730 * 23 22 21 25 25 C 1.53003 * 109.47021 * 149.99744 * 23 22 21 26 26 C 1.38889 * 120.75712 * 359.47002 * 21 20 19 27 27 H 1.08994 * 109.47175 * 300.00249 * 1 2 3 28 28 H 1.09004 * 109.46999 * 60.00245 * 1 2 3 29 29 H 1.09004 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47477 * 59.99597 * 3 2 1 31 31 H 1.09005 * 109.46642 * 299.99945 * 3 2 1 32 32 H 1.09003 * 109.46567 * 304.99909 * 4 3 2 33 33 H 1.09001 * 109.47315 * 184.99847 * 4 3 2 34 34 H 1.09004 * 109.47198 * 35.88619 * 6 5 4 35 35 H 1.09002 * 109.47309 * 155.88367 * 6 5 4 36 36 H 0.97006 * 119.99571 * 179.97438 * 10 9 7 37 37 H 1.08002 * 120.43369 * 0.02562 * 18 17 15 38 38 H 1.08005 * 119.51229 * 180.02562 * 19 18 17 39 39 H 1.08993 * 109.47304 * 29.99595 * 23 22 21 40 40 H 1.09000 * 109.47198 * 59.99903 * 24 23 22 41 41 H 1.09006 * 109.46838 * 180.02562 * 24 23 22 42 42 H 1.09006 * 109.47190 * 299.99698 * 24 23 22 43 43 H 1.08999 * 109.47042 * 60.00202 * 25 23 22 44 44 H 1.09009 * 109.46927 * 179.97438 * 25 23 22 45 45 H 1.08992 * 109.47103 * 299.99472 * 25 23 22 46 46 H 1.07999 * 120.53472 * 180.27700 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.1053 -0.8922 -1.3426 7 6 5.4507 -1.3108 -0.8084 8 1 6.1405 -0.5664 -0.4392 9 6 5.8016 -2.6441 -0.7919 10 7 6.9760 -3.0094 -0.3261 11 14 4.6086 -3.9317 -1.4312 12 1 4.8410 -4.1445 -2.8824 13 1 4.8216 -5.2085 -0.7033 14 1 3.2152 -3.4657 -1.2161 15 6 4.2616 1.3336 -2.3217 16 8 4.2388 2.5444 -2.2226 17 6 4.6037 0.7028 -3.6181 18 6 4.0027 1.1323 -4.8070 19 6 4.3477 0.5190 -5.9938 20 7 5.2346 -0.4569 -6.0209 21 6 5.8233 -0.8983 -4.9229 22 8 6.7252 -1.9087 -5.0052 23 6 6.9810 -2.4457 -6.3045 24 6 6.0132 -3.5983 -6.5795 25 6 8.4200 -2.9616 -6.3689 26 6 5.5334 -0.3360 -3.6864 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6887 1.8464 0.8899 31 1 1.6886 1.8463 -0.8901 32 1 3.8514 0.5682 0.8410 33 1 3.9786 2.1765 0.0889 34 1 3.3180 -1.3640 -0.7546 35 1 4.0157 -1.2013 -2.3840 36 1 7.2226 -3.9475 -0.3142 37 1 3.2784 1.9333 -4.7955 38 1 3.8880 0.8458 -6.9149 39 1 6.8405 -1.6667 -7.0538 40 1 4.9880 -3.2308 -6.5336 41 1 6.2086 -4.0083 -7.5705 42 1 6.1537 -4.3774 -5.8302 43 1 8.5605 -3.7407 -5.6196 44 1 8.6150 -3.3717 -7.3599 45 1 9.1095 -2.1405 -6.1730 46 1 6.0198 -0.6965 -2.7921 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610742665.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:57 Heat of formation + Delta-G solvation = -96.428475 kcal Electronic energy + Delta-G solvation = -28693.251522 eV Core-core repulsion = 24776.268387 eV Total energy + Delta-G solvation = -3916.983135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = -2.59 seconds Orbital eigenvalues (eV) -41.97196 -40.77226 -39.11861 -38.63865 -36.89538 -34.66811 -34.22727 -33.81125 -31.53327 -30.95877 -29.55461 -28.18949 -27.27865 -25.96295 -24.45018 -24.43206 -23.77135 -22.33624 -20.65169 -19.15048 -19.12874 -18.13125 -17.84687 -17.27071 -17.09500 -16.95107 -16.72509 -16.57551 -16.06534 -15.94489 -15.55740 -15.34061 -15.06439 -14.76478 -14.70834 -14.29854 -14.17922 -13.78879 -13.47947 -13.29384 -13.23171 -13.20084 -12.90738 -12.82214 -12.81199 -12.73283 -12.56188 -12.13417 -11.98854 -11.92891 -11.79612 -11.72848 -11.32019 -10.92732 -10.72705 -10.63529 -10.45897 -9.56709 -9.44661 -8.33364 -6.37275 -0.18335 0.18358 1.32476 1.35251 1.43080 1.58821 1.99956 2.16594 2.30322 2.75757 2.90028 3.01510 3.27161 3.46683 3.90726 4.00730 4.02911 4.09385 4.13534 4.18229 4.18708 4.28339 4.37188 4.51393 4.53337 4.58121 4.66102 4.69341 4.75578 4.78047 4.81965 4.83676 4.86421 4.87150 4.90063 4.99889 5.18081 5.22773 5.24294 5.41530 5.46203 5.57972 6.09790 6.26302 6.34751 6.48295 6.64924 6.79579 7.02979 7.26871 8.81857 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011083 B = 0.005489 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.689533 B = 5100.150978 C = 6424.337278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.057 3.943 4 C 0.112 3.888 5 N -0.575 5.575 6 C 0.221 3.779 7 C -0.535 4.535 8 H 0.039 0.961 9 C 0.040 3.960 10 N -0.928 5.928 11 Si 0.917 3.083 12 H -0.268 1.268 13 H -0.279 1.279 14 H -0.245 1.245 15 C 0.557 3.443 16 O -0.574 6.574 17 C -0.060 4.060 18 C -0.165 4.165 19 C 0.139 3.861 20 N -0.531 5.531 21 C 0.306 3.694 22 O -0.321 6.321 23 C 0.071 3.929 24 C -0.163 4.163 25 C -0.147 4.147 26 C -0.176 4.176 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.033 0.967 36 H 0.269 0.731 37 H 0.163 0.837 38 H 0.212 0.788 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.784 3.262 -10.957 15.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.020 4.020 4 C -0.010 4.010 5 N -0.303 5.303 6 C 0.099 3.901 7 C -0.573 4.573 8 H 0.057 0.943 9 C -0.161 4.161 10 N -0.566 5.566 11 Si 0.741 3.259 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.168 1.168 15 C 0.345 3.655 16 O -0.456 6.456 17 C -0.071 4.071 18 C -0.186 4.186 19 C -0.016 4.016 20 N -0.255 5.255 21 C 0.129 3.871 22 O -0.229 6.229 23 C 0.015 3.985 24 C -0.221 4.221 25 C -0.204 4.204 26 C -0.197 4.197 27 H 0.076 0.924 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.078 0.922 37 H 0.180 0.820 38 H 0.228 0.772 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.120 0.880 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.127 0.873 45 H 0.077 0.923 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.192 3.000 -11.393 14.943 hybrid contribution -0.272 -0.304 1.003 1.083 sum -9.463 2.696 -10.390 14.310 Atomic orbital electron populations 1.22896 0.79781 1.03433 1.00843 1.87968 1.21337 1.28320 1.95544 1.22929 0.92710 0.84873 1.01498 1.21628 0.93475 0.99752 0.86149 1.47813 1.62970 1.08393 1.11137 1.19735 0.96229 0.76566 0.97550 1.21325 1.00652 0.92956 1.42359 0.94289 1.25466 0.96211 1.00093 0.94326 1.70004 1.22065 1.17800 1.46764 0.86147 0.81196 0.79322 0.79257 1.19353 1.20390 1.16830 1.18420 0.76634 0.86100 0.84303 1.90669 1.55556 1.14044 1.85318 1.20149 0.96898 0.95064 0.94963 1.22237 1.02698 1.02537 0.91136 1.23039 0.90930 0.88871 0.98807 1.67176 1.12249 1.16606 1.29484 1.19680 0.89532 0.88344 0.89579 1.86411 1.55415 1.46341 1.34688 1.22652 0.96939 0.96300 0.82599 1.22201 0.98909 0.97687 1.03269 1.21934 0.92811 1.01589 1.04063 1.22078 1.01301 0.97310 0.99059 0.92393 0.93637 0.89228 0.89509 0.93422 0.89769 0.88431 0.93486 0.94893 0.92219 0.81954 0.77157 0.88802 0.93363 0.87965 0.93419 0.92716 0.87314 0.92280 0.83134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.19 9.44 -148.98 -1.41 -14.60 16 3 C 0.06 1.67 6.28 71.98 0.45 2.12 16 4 C 0.11 4.04 5.87 86.38 0.51 4.55 16 5 N -0.58 -24.35 2.42 -829.21 -2.01 -26.36 16 6 C 0.22 10.33 3.60 85.63 0.31 10.64 16 7 C -0.53 -29.35 7.44 25.60 0.19 -29.16 16 8 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 9 C 0.04 2.24 5.47 84.65 0.46 2.70 16 10 N -0.93 -55.89 13.96 21.45 0.30 -55.59 16 11 Si 0.92 43.04 27.47 68.60 1.88 44.93 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 H -0.24 -10.77 6.54 99.48 0.65 -10.12 16 15 C 0.56 23.55 7.31 86.88 0.63 24.18 16 16 O -0.57 -25.18 16.59 -3.75 -0.06 -25.24 16 17 C -0.06 -2.37 4.99 -19.90 -0.10 -2.47 16 18 C -0.17 -4.98 9.83 22.63 0.22 -4.76 16 19 C 0.14 3.63 11.17 84.62 0.94 4.58 16 20 N -0.53 -17.13 8.61 -309.14 -2.66 -19.79 16 21 C 0.31 12.11 7.45 84.80 0.63 12.74 16 22 O -0.32 -12.89 9.76 -90.05 -0.88 -13.77 16 23 C 0.07 2.09 3.11 30.60 0.10 2.18 16 24 C -0.16 -4.34 9.53 71.98 0.69 -3.66 16 25 C -0.15 -3.60 9.56 71.98 0.69 -2.91 16 26 C -0.18 -7.69 7.55 22.75 0.17 -7.52 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.08 3.17 8.07 -2.39 -0.02 3.15 16 33 H 0.10 3.37 7.36 -2.39 -0.02 3.36 16 34 H 0.05 2.22 6.09 -2.38 -0.01 2.21 16 35 H 0.03 1.56 4.81 -2.39 -0.01 1.55 16 36 H 0.27 15.23 8.31 -92.70 -0.77 14.46 16 37 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 38 H 0.21 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.09 2.60 6.97 -2.39 -0.02 2.58 16 40 H 0.05 1.38 8.14 -2.39 -0.02 1.37 16 41 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 42 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 43 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.15 7.78 4.81 -2.91 -0.01 7.77 16 Total: -1.00 -71.51 379.34 3.23 -68.28 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.92 Total: 27.08 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: 7.15 Total: 15.06 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -4.37 Total: -101.74 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -2.35 Total: -53.62 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.93 kcal Total: -71.51 3.23 -68.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610742665.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.145 kcal (2) G-P(sol) polarization free energy of solvation -71.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.58 seconds