Wall clock time and date at job start Tue Mar 31 2020 15:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42901 * 114.00253 * 2 1 4 4 C 1.53000 * 109.47432 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.46835 * 65.00050 * 4 3 2 6 6 C 1.46492 * 120.00147 * 262.68742 * 5 4 3 7 7 C 1.50702 * 109.47437 * 270.00457 * 6 5 4 8 8 H 1.07994 * 119.99893 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99854 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00428 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99800 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46729 * 60.00427 * 11 9 7 13 13 H 1.48495 * 109.47193 * 180.02562 * 11 9 7 14 14 H 1.48493 * 109.47035 * 300.00339 * 11 9 7 15 15 C 1.34779 * 119.99541 * 82.69189 * 5 4 3 16 16 O 1.21515 * 119.99565 * 184.95064 * 15 5 4 17 17 C 1.48155 * 120.00252 * 4.95217 * 15 5 4 18 18 C 1.39159 * 119.68663 * 175.51376 * 17 15 5 19 19 C 1.38747 * 119.18638 * 180.02562 * 18 17 15 20 20 C 1.38366 * 118.55303 * 359.97438 * 19 18 17 21 21 C 1.39251 * 119.31305 * 359.97438 * 20 19 18 22 22 O 1.35665 * 119.61699 * 179.97438 * 21 20 19 23 23 C 1.42895 * 116.99697 * 180.02562 * 22 21 20 24 24 C 1.52999 * 109.47337 * 89.99978 * 23 22 21 25 25 C 1.52998 * 109.47339 * 210.00222 * 23 22 21 26 26 N 1.31920 * 120.76164 * 0.28061 * 21 20 19 27 27 H 1.09004 * 109.47150 * 299.99694 * 1 2 3 28 28 H 1.09005 * 109.47176 * 59.99673 * 1 2 3 29 29 H 1.09001 * 109.47709 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46853 * 60.00231 * 3 2 1 31 31 H 1.09000 * 109.47496 * 300.00530 * 3 2 1 32 32 H 1.08998 * 109.46998 * 305.00494 * 4 3 2 33 33 H 1.08999 * 109.46913 * 185.00034 * 4 3 2 34 34 H 1.09004 * 109.47191 * 30.00388 * 6 5 4 35 35 H 1.09002 * 109.47200 * 150.00026 * 6 5 4 36 36 H 0.96995 * 120.00026 * 179.97438 * 10 9 7 37 37 H 1.07998 * 120.40982 * 0.02562 * 18 17 15 38 38 H 1.08002 * 120.72201 * 179.97438 * 19 18 17 39 39 H 1.08013 * 120.34499 * 180.02562 * 20 19 18 40 40 H 1.09005 * 109.47501 * 330.00257 * 23 22 21 41 41 H 1.08998 * 109.47172 * 300.00270 * 24 23 22 42 42 H 1.09000 * 109.47278 * 59.99934 * 24 23 22 43 43 H 1.08996 * 109.47589 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47601 * 59.99640 * 25 23 22 45 45 H 1.09000 * 109.47700 * 180.02562 * 25 23 22 46 46 H 1.09010 * 109.47243 * 300.00229 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.2594 -0.8720 -1.2985 7 6 5.7100 -1.1084 -0.9654 8 1 6.3560 -0.2722 -0.7423 9 6 6.2124 -2.3922 -0.9453 10 7 5.4259 -3.4105 -1.2175 11 14 8.0107 -2.6851 -0.5330 12 1 8.2971 -2.1665 0.8287 13 1 8.2983 -4.1412 -0.5793 14 1 8.8662 -1.9804 -1.5212 15 6 4.1195 1.3155 -2.3626 16 8 4.3969 0.7879 -3.4215 17 6 3.9394 2.7843 -2.2916 18 6 4.1808 3.5636 -3.4190 19 6 4.0094 4.9382 -3.3407 20 6 3.6018 5.4864 -2.1374 21 6 3.3766 4.6487 -1.0481 22 8 2.9773 5.1796 0.1348 23 6 2.7631 4.2692 1.2151 24 6 4.0649 4.0928 1.9993 25 6 1.6802 4.8241 2.1426 26 7 3.5528 3.3454 -1.1514 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8465 -0.8899 32 1 3.8514 0.5681 0.8409 33 1 3.9785 2.1765 0.0889 34 1 3.6312 -1.3898 -0.5737 35 1 4.0496 -1.2522 -2.2983 36 1 5.7795 -4.3136 -1.2037 37 1 4.4977 3.1041 -4.3435 38 1 4.1902 5.5666 -4.2002 39 1 3.4589 6.5530 -2.0442 40 1 2.4436 3.3049 0.8198 41 1 4.8364 3.6975 1.3385 42 1 4.3844 5.0570 2.3946 43 1 3.9015 3.3987 2.8236 44 1 0.7527 4.9497 1.5841 45 1 1.5171 4.1298 2.9670 46 1 1.9996 5.7884 2.5380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611108446.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:12 Heat of formation + Delta-G solvation = -80.451902 kcal Electronic energy + Delta-G solvation = -29098.129063 eV Core-core repulsion = 25181.838724 eV Total energy + Delta-G solvation = -3916.290339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 7.52 seconds Orbital eigenvalues (eV) -42.16701 -40.48633 -39.18526 -38.66245 -36.71059 -34.98301 -34.22495 -33.56668 -31.36944 -31.10869 -29.12258 -28.15075 -27.18454 -26.22951 -24.82473 -24.25888 -23.84652 -22.08091 -21.08616 -19.09766 -18.72415 -18.51531 -17.54505 -17.32085 -17.07429 -16.87367 -16.64958 -16.53851 -16.21075 -16.04666 -15.47829 -15.34580 -15.01440 -14.69070 -14.45245 -14.32341 -13.91022 -13.74854 -13.39693 -13.19326 -13.16716 -13.12421 -13.02315 -12.91202 -12.79191 -12.72544 -12.57108 -12.21041 -12.05275 -11.86258 -11.77081 -11.54587 -11.29979 -10.96778 -10.63814 -10.57248 -10.18965 -9.66590 -9.37126 -8.21103 -6.37309 -0.36647 0.24834 1.35685 1.40773 1.48239 1.79700 1.97588 2.16342 2.40227 2.78761 2.89461 3.00118 3.07964 3.67874 3.89465 3.96767 4.01404 4.05219 4.10794 4.19321 4.22232 4.28871 4.40937 4.46843 4.49366 4.53396 4.68084 4.74326 4.79347 4.85715 4.88364 4.91204 4.98263 5.07824 5.08567 5.17016 5.22692 5.27865 5.31532 5.44012 5.55251 5.81459 6.05247 6.17960 6.29117 6.54631 6.70114 6.73197 7.19747 7.36513 8.86247 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.004684 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.259827 B = 5976.751317 C = 6580.175815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.418 6.418 3 C 0.065 3.935 4 C 0.096 3.904 5 N -0.571 5.571 6 C 0.269 3.731 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.010 3.990 10 N -0.926 5.926 11 Si 0.971 3.029 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.275 1.275 15 C 0.542 3.458 16 O -0.583 6.583 17 C 0.104 3.896 18 C -0.155 4.155 19 C -0.028 4.028 20 C -0.157 4.157 21 C 0.304 3.696 22 O -0.298 6.298 23 C 0.056 3.944 24 C -0.172 4.172 25 C -0.145 4.145 26 N -0.522 5.522 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.148 0.852 34 H 0.024 0.976 35 H -0.004 1.004 36 H 0.268 0.732 37 H 0.142 0.858 38 H 0.193 0.807 39 H 0.180 0.820 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.985 22.612 5.700 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.338 6.338 3 C -0.012 4.012 4 C -0.026 4.026 5 N -0.299 5.299 6 C 0.149 3.851 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.190 4.190 10 N -0.565 5.565 11 Si 0.794 3.206 12 H -0.186 1.186 13 H -0.200 1.200 14 H -0.201 1.201 15 C 0.330 3.670 16 O -0.464 6.464 17 C -0.031 4.031 18 C -0.177 4.177 19 C -0.053 4.053 20 C -0.178 4.178 21 C 0.123 3.877 22 O -0.205 6.205 23 C 0.000 4.000 24 C -0.229 4.229 25 C -0.202 4.202 26 N -0.250 5.250 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.042 0.958 35 H 0.014 0.986 36 H 0.077 0.923 37 H 0.160 0.840 38 H 0.210 0.790 39 H 0.198 0.802 40 H 0.103 0.897 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.105 0.895 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.956 21.657 5.989 24.189 hybrid contribution 0.789 -0.579 -0.631 1.164 sum -8.167 21.079 5.358 23.232 Atomic orbital electron populations 1.22882 0.79987 1.03356 1.00675 1.88029 1.21274 1.29035 1.95435 1.23019 0.93689 0.84073 1.00392 1.22564 0.93298 1.01564 0.85188 1.48010 1.62176 1.09784 1.09924 1.18751 0.95073 0.75761 0.95563 1.21646 0.95791 0.92886 1.48277 0.93016 1.25881 1.03029 0.95376 0.94668 1.70072 1.37777 0.99444 1.49254 0.85434 0.78656 0.77364 0.79138 1.18561 1.20020 1.20074 1.18571 0.78042 0.86595 0.83831 1.90698 1.51450 1.73857 1.30406 1.20615 0.99309 0.92595 0.90535 1.22106 1.01339 0.95459 0.98806 1.21865 0.92006 0.92898 0.98508 1.21705 1.02914 1.02524 0.90623 1.20345 0.91672 0.88021 0.87701 1.86307 1.80895 1.36288 1.17059 1.22939 0.97311 0.94126 0.85611 1.22278 0.96588 1.03381 1.00701 1.21911 0.96732 1.02952 0.98642 1.67461 1.19182 1.12393 1.25957 0.91748 0.94312 0.89469 0.89814 0.94345 0.91876 0.83526 0.95843 0.98623 0.92327 0.83986 0.79001 0.80247 0.89669 0.94044 0.90758 0.89530 0.91631 0.88901 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.42 -15.78 10.42 -148.98 -1.55 -17.34 16 3 C 0.07 2.13 4.43 71.98 0.32 2.45 16 4 C 0.10 3.71 5.12 86.38 0.44 4.16 16 5 N -0.57 -27.92 2.42 -829.22 -2.01 -29.93 16 6 C 0.27 15.99 5.17 85.64 0.44 16.43 16 7 C -0.55 -33.57 9.39 25.60 0.24 -33.33 16 8 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 9 C 0.01 0.58 5.46 84.65 0.46 1.04 16 10 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 11 Si 0.97 46.47 29.54 68.60 2.03 48.49 16 12 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 14 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 15 C 0.54 25.84 7.58 86.88 0.66 26.50 16 16 O -0.58 -32.37 15.88 -3.76 -0.06 -32.43 16 17 C 0.10 3.70 6.49 41.85 0.27 3.98 16 18 C -0.16 -4.37 9.63 22.61 0.22 -4.15 16 19 C -0.03 -0.49 10.16 22.42 0.23 -0.27 16 20 C -0.16 -2.75 10.04 22.54 0.23 -2.53 16 21 C 0.30 7.23 7.46 84.92 0.63 7.86 16 22 O -0.30 -6.31 9.76 -89.81 -0.88 -7.19 16 23 C 0.06 1.07 2.87 30.59 0.09 1.16 16 24 C -0.17 -3.27 9.12 71.98 0.66 -2.61 16 25 C -0.15 -1.91 9.56 71.98 0.69 -1.22 16 26 N -0.52 -15.66 3.43 -298.20 -1.02 -16.68 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 2.10 6.38 -2.39 -0.02 2.08 16 31 H 0.04 1.30 7.15 -2.39 -0.02 1.28 16 32 H 0.06 2.58 8.02 -2.39 -0.02 2.56 16 33 H 0.15 5.06 3.02 -13.24 -0.04 5.02 16 34 H 0.02 1.46 7.85 -2.38 -0.02 1.44 16 35 H 0.00 -0.29 7.36 -2.39 -0.02 -0.31 16 36 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.14 4.17 7.64 -2.91 -0.02 4.15 16 38 H 0.19 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.18 1.84 8.06 -2.90 -0.02 1.82 16 40 H 0.09 1.90 2.49 -2.38 -0.01 1.89 16 41 H 0.04 0.98 7.38 -2.39 -0.02 0.97 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -81.43 374.20 4.56 -76.86 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.95 Total: 14.92 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: 6.82 Total: 21.45 kcal Atomic # 7 Polarization: -102.02 SS G_CDS: -2.75 Total: -104.77 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -2.49 Total: -56.95 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.49 kcal Total: -81.43 4.56 -76.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611108446.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.590 kcal (2) G-P(sol) polarization free energy of solvation -81.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.52 seconds