Wall clock time and date at job start Tue Mar 31 2020 15:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.46974 * 2 1 4 4 O 1.20762 * 120.00009 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99872 * 179.97438 * 3 2 1 6 6 O 1.45205 * 109.47336 * 180.02562 * 5 3 2 7 7 C 1.34228 * 117.00187 * 180.02562 * 6 5 3 8 8 O 1.20820 * 120.00153 * 359.97438 * 7 6 5 9 9 C 1.50696 * 119.99885 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47116 * 179.97438 * 10 9 7 12 12 C 1.39862 * 126.04094 * 269.68901 * 11 10 9 13 13 C 1.50702 * 125.90180 * 0.02562 * 12 11 10 14 14 N 1.30842 * 108.19992 * 179.81747 * 12 11 10 15 15 N 1.40084 * 108.20663 * 0.44091 * 14 12 11 16 16 C 1.46495 * 126.04013 * 179.73793 * 15 14 12 17 17 C 1.50699 * 109.47131 * 269.98016 * 16 15 14 18 18 H 1.08002 * 119.99767 * 359.97438 * 17 16 15 19 19 C 1.37881 * 120.00208 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99755 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47257 * 89.99976 * 21 19 17 23 23 H 1.48501 * 109.46940 * 210.00122 * 21 19 17 24 24 H 1.48499 * 109.47462 * 329.99632 * 21 19 17 25 25 C 1.34950 * 107.92381 * 359.71898 * 15 14 12 26 26 C 1.50694 * 126.12576 * 179.97438 * 25 15 14 27 27 H 1.08994 * 109.47385 * 299.99933 * 1 2 3 28 28 H 1.09003 * 109.46756 * 59.99946 * 1 2 3 29 29 H 1.08994 * 109.46760 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47240 * 240.00351 * 2 1 3 31 31 H 1.08994 * 109.46915 * 120.00327 * 2 1 3 32 32 H 1.08995 * 109.47732 * 60.00181 * 5 3 2 33 33 H 1.09005 * 109.47197 * 299.99930 * 5 3 2 34 34 H 1.09000 * 109.47543 * 59.99651 * 9 7 6 35 35 H 1.09008 * 109.47338 * 300.00164 * 9 7 6 36 36 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 37 37 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 38 38 H 1.08998 * 109.47393 * 89.99256 * 13 12 11 39 39 H 1.09001 * 109.46747 * 209.99996 * 13 12 11 40 40 H 1.08998 * 109.46776 * 329.99757 * 13 12 11 41 41 H 1.09001 * 109.47188 * 29.97306 * 16 15 14 42 42 H 1.08997 * 109.47530 * 149.97532 * 16 15 14 43 43 H 0.96999 * 120.00262 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47170 * 270.02464 * 26 25 15 45 45 H 1.09004 * 109.47112 * 30.02444 * 26 25 15 46 46 H 1.09003 * 109.46820 * 150.02019 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2476 2.3387 0.0005 5 6 3.5139 1.6962 0.0006 6 8 3.7397 3.1306 0.0011 7 6 5.0159 3.5466 0.0011 8 8 5.9146 2.7391 0.0012 9 6 5.3277 5.0210 0.0010 10 6 6.8445 5.2215 0.0004 11 6 7.1563 6.6959 -0.0003 12 6 7.3322 7.4993 -1.1316 13 6 7.2421 7.0402 -2.5642 14 7 7.5840 8.7193 -0.7314 15 7 7.5864 8.7286 0.6694 16 6 7.8325 9.8934 1.5232 17 6 9.3070 9.9990 1.8160 18 1 9.9921 9.2710 1.4073 19 6 9.7813 11.0250 2.6056 20 7 8.9470 11.9118 3.1027 21 14 11.6089 11.1555 2.9691 22 1 12.2626 11.9876 1.9273 23 1 11.8052 11.7842 4.3000 24 1 12.2118 9.7984 2.9690 25 6 7.3214 7.4752 1.0936 26 6 7.2269 7.0241 2.5283 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.9655 1.2574 -0.8891 33 1 3.9647 1.2575 0.8909 34 1 4.9001 5.4829 0.8909 35 1 4.9001 5.4828 -0.8890 36 1 7.2716 4.7598 -0.8898 37 1 7.2723 4.7597 0.8902 38 1 6.2151 7.1423 -2.9146 39 1 7.8998 7.6504 -3.1832 40 1 7.5464 5.9957 -2.6307 41 1 7.4981 10.7960 1.0116 42 1 7.2835 9.7812 2.4581 43 1 9.2806 12.6334 3.6585 44 1 8.2096 6.7030 2.8737 45 1 6.8766 7.8506 3.1467 46 1 6.5261 6.1926 2.6023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727186745.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:38 Heat of formation + Delta-G solvation = -94.954139 kcal Electronic energy + Delta-G solvation = -26326.312720 eV Core-core repulsion = 22409.393517 eV Total energy + Delta-G solvation = -3916.919203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.19605 -41.62773 -40.38726 -37.56878 -36.11765 -34.96171 -34.20610 -33.84858 -31.96074 -30.63076 -30.24432 -28.22389 -27.62387 -25.78225 -24.77131 -23.88104 -21.73276 -20.66045 -20.33081 -20.17154 -18.84026 -18.69844 -17.90926 -17.78269 -17.28761 -16.65876 -16.53053 -16.28272 -15.97855 -15.47290 -15.35822 -14.71108 -14.58620 -14.47056 -14.16803 -13.97668 -13.81114 -13.71185 -13.53149 -13.34227 -13.26919 -13.23434 -13.20174 -12.85794 -12.77376 -12.65890 -12.60198 -12.59202 -12.23683 -12.04165 -11.95229 -11.78983 -11.71675 -11.61051 -11.15379 -10.76127 -10.68729 -9.84970 -9.06366 -8.35515 -6.53280 0.88214 1.15247 1.18205 1.35377 1.36560 1.46322 1.49101 1.93486 1.96968 2.32704 2.94068 2.95834 3.74224 3.86698 3.92751 3.94062 4.09436 4.16110 4.18310 4.22236 4.30575 4.31505 4.34500 4.54096 4.58497 4.65770 4.71897 4.80405 4.81585 4.87135 4.88776 4.92206 5.01224 5.03606 5.05647 5.14140 5.21074 5.33194 5.36582 5.39864 5.49395 5.55034 5.79413 6.04161 6.30648 6.44729 6.61341 6.73175 7.10622 7.18063 8.70722 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023876 B = 0.002103 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.427403 B =13311.694194 C =13648.232772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.160 4.160 3 C 0.356 3.644 4 O -0.478 6.478 5 C 0.001 3.999 6 O -0.358 6.358 7 C 0.473 3.527 8 O -0.527 6.527 9 C -0.104 4.104 10 C -0.006 4.006 11 C -0.261 4.261 12 C 0.055 3.945 13 C -0.064 4.064 14 N -0.351 5.351 15 N -0.355 5.355 16 C 0.274 3.726 17 C -0.552 4.552 18 H 0.048 0.952 19 C 0.021 3.979 20 N -0.919 5.919 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.270 1.270 24 H -0.269 1.269 25 C 0.080 3.920 26 C -0.084 4.084 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.095 0.905 41 H 0.018 0.982 42 H 0.047 0.953 43 H 0.273 0.727 44 H 0.079 0.921 45 H 0.062 0.938 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.632 -26.446 -5.526 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C 0.233 3.767 4 O -0.353 6.353 5 C -0.072 4.072 6 O -0.275 6.275 7 C 0.317 3.683 8 O -0.416 6.416 9 C -0.141 4.141 10 C -0.044 4.044 11 C -0.272 4.272 12 C -0.110 4.110 13 C -0.123 4.123 14 N -0.174 5.174 15 N -0.135 5.135 16 C 0.155 3.845 17 C -0.591 4.591 18 H 0.067 0.933 19 C -0.180 4.180 20 N -0.557 5.557 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.194 1.194 24 H -0.193 1.193 25 C -0.050 4.050 26 C -0.142 4.142 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.148 0.852 31 H 0.147 0.853 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.129 0.871 35 H 0.134 0.866 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.114 0.886 41 H 0.036 0.964 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.558 -24.704 -5.676 28.288 hybrid contribution 0.879 0.117 0.600 1.070 sum -11.679 -24.587 -5.076 27.689 Atomic orbital electron populations 1.21638 0.94197 1.02972 1.01849 1.22061 0.97738 0.92176 1.07699 1.25189 0.88882 0.92884 0.69776 1.90460 1.59350 1.49238 1.36206 1.23839 0.97331 0.79013 1.07063 1.86621 1.29792 1.27048 1.84040 1.24095 0.79877 0.93196 0.71111 1.90657 1.47469 1.56899 1.46592 1.21473 0.98493 0.87100 1.07047 1.19453 0.92557 0.88645 1.03780 1.19622 1.19877 0.97506 0.90227 1.22818 0.99279 0.90418 0.98450 1.20237 1.03506 1.02016 0.86506 1.77224 1.26974 1.22720 0.90517 1.49007 1.51699 1.08749 1.04018 1.19139 0.96818 0.80976 0.87599 1.21428 0.92407 1.12813 1.32411 0.93335 1.25765 1.03319 0.94296 0.94623 1.70004 1.36803 1.15058 1.33817 0.85342 0.78486 0.78584 0.78007 1.20048 1.19428 1.19311 1.21503 0.99712 0.85341 0.98412 1.20468 1.03835 1.02132 0.87809 0.93559 0.93485 0.89583 0.85179 0.85276 0.85840 0.86007 0.87076 0.86564 0.90012 0.90800 0.89217 0.91657 0.88603 0.96364 0.93515 0.91741 0.90242 0.91946 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.20 71.98 0.66 -0.61 16 2 C -0.16 -0.81 6.36 29.85 0.19 -0.62 16 3 C 0.36 4.87 7.24 29.10 0.21 5.08 16 4 O -0.48 -11.30 16.13 17.39 0.28 -11.02 16 5 C 0.00 0.02 5.88 71.23 0.42 0.44 16 6 O -0.36 -7.48 9.76 -45.04 -0.44 -7.92 16 7 C 0.47 10.09 7.96 71.23 0.57 10.65 16 8 O -0.53 -12.94 15.73 21.98 0.35 -12.59 16 9 C -0.10 -2.15 5.79 29.85 0.17 -1.98 16 10 C -0.01 -0.14 4.41 29.85 0.13 -0.01 16 11 C -0.26 -8.80 5.35 -20.14 -0.11 -8.90 16 12 C 0.06 2.03 7.22 43.10 0.31 2.34 16 13 C -0.06 -1.65 10.26 71.24 0.73 -0.92 16 14 N -0.35 -16.47 12.58 -47.38 -0.60 -17.06 16 15 N -0.35 -17.06 3.60 -338.42 -1.22 -18.28 16 16 C 0.27 14.78 6.00 85.63 0.51 15.29 16 17 C -0.55 -31.52 9.39 25.60 0.24 -31.28 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 19 C 0.02 1.16 5.46 84.66 0.46 1.62 16 20 N -0.92 -52.74 13.29 21.45 0.28 -52.46 16 21 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 22 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.08 3.15 6.93 41.40 0.29 3.44 16 26 C -0.08 -2.68 9.72 71.23 0.69 -1.98 16 27 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 28 H 0.05 0.54 8.10 -2.39 -0.02 0.52 16 29 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 32 H 0.12 1.13 8.13 -2.39 -0.02 1.11 16 33 H 0.12 1.16 8.13 -2.38 -0.02 1.14 16 34 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 36 H 0.08 1.90 7.20 -2.39 -0.02 1.89 16 37 H 0.07 1.82 7.73 -2.39 -0.02 1.80 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.10 1.96 7.25 -2.39 -0.02 1.94 16 41 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.05 2.50 7.05 -2.39 -0.02 2.49 16 43 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 44 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 45 H 0.06 2.11 7.08 -2.39 -0.02 2.09 16 46 H 0.11 2.54 7.77 -2.39 -0.02 2.53 16 Total: -1.00 -76.97 395.05 7.14 -69.83 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.97 Total: 11.27 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 5.48 Total: -7.45 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.53 Total: -87.80 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: 0.19 Total: -31.53 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -76.97 7.14 -69.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727186745.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.123 kcal (2) G-P(sol) polarization free energy of solvation -76.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds