Wall clock time and date at job start Tue Mar 31 2020 15:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35973 * 116.99428 * 2 1 4 4 C 1.38704 * 119.98131 * 0.02562 * 3 2 1 5 5 C 1.38265 * 120.12338 * 179.74594 * 4 3 2 6 6 C 1.38474 * 120.07141 * 0.50772 * 5 4 3 7 7 O 1.36094 * 120.02652 * 179.74445 * 6 5 4 8 8 C 1.42901 * 116.99954 * 5.41674 * 7 6 5 9 9 C 1.53001 * 109.47623 * 275.16201 * 8 7 6 10 10 C 1.52998 * 109.47188 * 155.15604 * 8 7 6 11 11 C 1.39296 * 119.94880 * 359.47260 * 6 5 4 12 12 N 1.39948 * 120.05959 * 180.30008 * 11 6 5 13 13 C 1.46502 * 119.99912 * 180.02562 * 12 11 6 14 14 C 1.50701 * 109.47307 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99684 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99924 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99471 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46606 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00193 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99937 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99924 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46856 * 59.99974 * 22 20 18 24 24 H 1.48507 * 109.46820 * 179.97438 * 22 20 18 25 25 H 1.48489 * 109.47329 * 299.99709 * 22 20 18 26 26 C 1.38650 * 119.97048 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47246 * 300.00014 * 1 2 3 29 29 H 1.08998 * 109.46967 * 60.00375 * 1 2 3 30 30 H 1.08001 * 119.93317 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.96835 * 180.27577 * 5 4 3 32 32 H 1.09009 * 109.46701 * 35.16193 * 8 7 6 33 33 H 1.08998 * 109.46468 * 300.00056 * 9 8 7 34 34 H 1.09001 * 109.47261 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47073 * 59.99674 * 9 8 7 36 36 H 1.08997 * 109.47538 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.47275 * 300.00738 * 10 8 7 38 38 H 1.09000 * 109.46744 * 60.00723 * 10 8 7 39 39 H 0.97002 * 120.00290 * 359.97438 * 12 11 6 40 40 H 1.09004 * 109.47062 * 299.99268 * 13 12 11 41 41 H 1.08995 * 109.47859 * 59.99434 * 13 12 11 42 42 H 0.96996 * 120.00104 * 359.97438 * 16 14 13 43 43 H 1.08999 * 109.47158 * 299.99618 * 17 16 14 44 44 H 1.08991 * 109.47126 * 60.00203 * 17 16 14 45 45 H 0.96996 * 120.00192 * 180.02562 * 21 20 18 46 46 H 1.07999 * 120.03520 * 0.02628 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3745 0.0005 5 6 1.9148 3.6081 0.0058 6 6 3.2974 3.6859 0.0000 7 8 3.9111 4.9006 0.0000 8 6 3.0729 6.0510 0.1263 9 6 2.5419 6.4491 -1.2523 10 6 3.8811 7.2088 0.7155 11 6 4.0595 2.5199 -0.0001 12 7 5.4569 2.5959 0.0004 13 6 6.2572 1.3687 -0.0003 14 6 7.7217 1.7240 -0.0003 15 8 8.0633 2.8878 -0.0002 16 7 8.6518 0.7486 -0.0003 17 6 10.0755 1.0941 -0.0008 18 6 10.8986 -0.1683 -0.0014 19 1 10.4101 -1.1315 -0.0010 20 6 12.2754 -0.0935 -0.0014 21 7 12.8702 1.0794 -0.0014 22 14 13.2957 -1.6582 -0.0014 23 1 12.9797 -2.4552 -1.2140 24 1 14.7389 -1.3080 -0.0020 25 1 12.9799 -2.4552 1.2110 26 6 3.4309 1.2836 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2119 2.3163 0.0014 31 1 1.3238 4.5120 0.0108 32 1 2.2358 5.8199 0.7853 33 1 3.3790 6.6801 -1.9111 34 1 1.9021 7.3264 -1.1558 35 1 1.9660 5.6243 -1.6720 36 1 3.2417 8.0861 0.8123 37 1 4.2594 6.9251 1.6975 38 1 4.7181 7.4398 0.0566 39 1 5.8957 3.4610 0.0004 40 1 6.0251 0.7831 0.8893 41 1 6.0255 0.7842 -0.8907 42 1 8.3785 -0.1821 0.0000 43 1 10.3071 1.6788 -0.8910 44 1 10.3076 1.6793 0.8889 45 1 13.8387 1.1321 -0.0018 46 1 4.0193 0.3779 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759776376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:35 Heat of formation + Delta-G solvation = -90.144494 kcal Electronic energy + Delta-G solvation = -26623.711937 eV Core-core repulsion = 22707.001296 eV Total energy + Delta-G solvation = -3916.710641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64650 -39.19871 -39.03288 -37.13797 -34.83113 -34.17563 -33.16558 -32.38975 -30.41244 -29.44243 -27.71530 -27.51944 -27.07043 -25.86955 -23.47548 -22.43964 -21.56516 -20.86500 -19.81684 -18.78680 -17.80285 -17.42183 -16.58609 -15.90342 -15.87526 -15.54517 -15.50535 -15.22544 -15.04143 -14.82230 -14.73630 -14.38294 -13.95300 -13.60245 -13.30721 -13.13260 -12.81006 -12.71262 -12.57591 -12.47839 -12.37265 -12.20617 -11.99082 -11.95348 -11.74020 -11.38182 -11.19509 -11.02803 -10.88912 -10.72064 -10.51232 -10.34764 -9.98212 -9.44929 -9.22432 -8.77089 -8.20766 -7.97346 -7.10846 -6.18727 -4.26144 1.34951 1.55407 3.07014 3.12568 3.21501 3.24766 3.29460 3.30829 3.48954 3.76613 4.12575 4.35622 4.57587 4.64294 4.73612 4.86925 4.92190 4.95273 4.95539 5.13299 5.17431 5.25954 5.30097 5.31779 5.40827 5.42619 5.47731 5.50915 5.53275 5.57640 5.67845 5.79905 5.93102 5.96000 6.22097 6.27374 6.46984 7.05293 7.24416 7.28246 7.33430 7.47032 7.57387 7.63324 7.90480 7.94643 8.52831 8.71475 8.97882 9.40253 10.91427 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002564 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.663528 B =10918.584084 C =12898.385390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.318 6.318 3 C 0.142 3.858 4 C -0.236 4.236 5 C -0.126 4.126 6 C 0.026 3.974 7 O -0.311 6.311 8 C 0.082 3.918 9 C -0.180 4.180 10 C -0.150 4.150 11 C 0.242 3.758 12 N -0.720 5.720 13 C 0.102 3.898 14 C 0.493 3.507 15 O -0.551 6.551 16 N -0.706 5.706 17 C 0.250 3.750 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.064 3.936 21 N -0.885 5.885 22 Si 0.905 3.095 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C -0.208 4.208 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.129 0.871 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.419 0.581 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.393 0.607 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.267 0.733 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.416 4.543 0.136 27.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.232 6.232 3 C 0.096 3.904 4 C -0.258 4.258 5 C -0.146 4.146 6 C -0.022 4.022 7 O -0.226 6.226 8 C 0.026 3.974 9 C -0.238 4.238 10 C -0.207 4.207 11 C 0.136 3.864 12 N -0.352 5.352 13 C -0.027 4.027 14 C 0.277 3.723 15 O -0.430 6.430 16 N -0.355 5.355 17 C 0.129 3.871 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.140 4.140 21 N -0.523 5.523 22 Si 0.732 3.268 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.232 4.232 27 H 0.114 0.886 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.147 0.853 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.259 0.741 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.226 0.774 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.077 0.923 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.505 5.160 0.120 27.003 hybrid contribution 0.152 -0.787 -0.023 0.802 sum -26.353 4.373 0.097 26.714 Atomic orbital electron populations 1.22992 0.78756 1.03552 1.01193 1.86060 1.21022 1.27090 1.89001 1.18502 0.91447 0.83891 0.96572 1.20673 0.99412 0.91518 1.14150 1.20728 0.92432 0.98105 1.03342 1.18247 0.90721 0.84400 1.08848 1.86107 1.35664 1.11540 1.89258 1.22314 0.93397 0.84913 0.96797 1.22388 1.02006 1.01949 0.97410 1.21853 1.00907 0.96060 1.01888 1.16797 0.83422 0.90488 0.95692 1.44353 1.01275 1.09025 1.80567 1.21149 0.89924 0.88441 1.03157 1.20327 0.87464 0.86564 0.77940 1.90666 1.82015 1.19184 1.51129 1.46404 1.08896 1.08354 1.71804 1.19143 0.73271 0.96754 0.97883 1.21180 0.91476 0.92178 1.53531 0.91832 1.24955 0.97742 0.96671 0.94620 1.69960 1.10153 1.23479 1.48673 0.86457 0.78958 0.82667 0.78731 1.20024 1.21062 1.20022 1.19577 0.91790 0.96180 1.15638 0.88552 0.92835 0.92838 0.85891 0.85320 0.91341 0.91357 0.91364 0.91921 0.90822 0.91597 0.91300 0.74074 0.89499 0.89504 0.77393 0.95386 0.95383 0.92338 0.84537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.56 10.50 -19.65 -0.21 -3.77 16 3 C 0.14 1.71 6.68 -39.26 -0.26 1.45 16 4 C -0.24 -2.52 9.03 -39.40 -0.36 -2.88 16 5 C -0.13 -1.39 8.24 -39.48 -0.33 -1.72 16 6 C 0.03 0.34 6.62 -39.10 -0.26 0.08 16 7 O -0.31 -4.12 9.04 -20.04 -0.18 -4.30 16 8 C 0.08 0.79 2.85 -26.73 -0.08 0.71 16 9 C -0.18 -1.49 9.17 37.16 0.34 -1.14 16 10 C -0.15 -1.29 9.56 37.16 0.36 -0.93 16 11 C 0.24 3.42 6.67 -83.59 -0.56 2.86 16 12 N -0.72 -11.06 5.70 -59.68 -0.34 -11.40 16 13 C 0.10 1.47 5.40 -5.19 -0.03 1.45 16 14 C 0.49 9.62 7.90 -10.99 -0.09 9.54 16 15 O -0.55 -12.98 15.67 5.55 0.09 -12.90 16 16 N -0.71 -14.46 5.55 -61.47 -0.34 -14.80 16 17 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 18 C -0.55 -14.65 9.28 -34.44 -0.32 -14.97 16 19 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 22 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C -0.21 -2.71 9.25 -39.26 -0.36 -3.07 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.12 1.01 6.28 -52.49 -0.33 0.68 16 31 H 0.13 1.12 5.41 -52.49 -0.28 0.84 16 32 H 0.07 0.58 6.32 -51.92 -0.33 0.25 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.53 6.90 -51.93 -0.36 0.17 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.42 7.23 6.79 -40.82 -0.28 6.95 16 40 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 41 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 42 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 46 H 0.14 1.65 6.74 -52.49 -0.35 1.29 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -32.95 380.96 -7.40 -40.36 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -6.81 Total: 9.84 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -1.07 Total: 0.77 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.05 Total: -51.47 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.30 Total: -20.97 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.95 -7.40 -40.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759776376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.788 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds