Wall clock time and date at job start Tue Mar 31 2020 15:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35973 * 116.99428 * 2 1 4 4 C 1.38704 * 119.98131 * 0.02562 * 3 2 1 5 5 C 1.38265 * 120.12338 * 179.74594 * 4 3 2 6 6 C 1.38474 * 120.07141 * 0.50772 * 5 4 3 7 7 O 1.36094 * 120.02652 * 179.74445 * 6 5 4 8 8 C 1.42901 * 116.99954 * 5.41674 * 7 6 5 9 9 C 1.53001 * 109.47623 * 275.16201 * 8 7 6 10 10 C 1.52998 * 109.47188 * 155.15604 * 8 7 6 11 11 C 1.39296 * 119.94880 * 359.47260 * 6 5 4 12 12 N 1.39948 * 120.05959 * 180.30008 * 11 6 5 13 13 C 1.46502 * 119.99912 * 180.02562 * 12 11 6 14 14 C 1.50701 * 109.47307 * 179.97438 * 13 12 11 15 15 O 1.21286 * 119.99684 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99924 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99471 * 179.97438 * 16 14 13 18 18 C 1.50700 * 109.46606 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00193 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99847 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99937 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99924 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46856 * 59.99974 * 22 20 18 24 24 H 1.48507 * 109.46820 * 179.97438 * 22 20 18 25 25 H 1.48489 * 109.47329 * 299.99709 * 22 20 18 26 26 C 1.38650 * 119.97048 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46673 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47246 * 300.00014 * 1 2 3 29 29 H 1.08998 * 109.46967 * 60.00375 * 1 2 3 30 30 H 1.08001 * 119.93317 * 0.02562 * 4 3 2 31 31 H 1.07998 * 119.96835 * 180.27577 * 5 4 3 32 32 H 1.09009 * 109.46701 * 35.16193 * 8 7 6 33 33 H 1.08998 * 109.46468 * 300.00056 * 9 8 7 34 34 H 1.09001 * 109.47261 * 179.97438 * 9 8 7 35 35 H 1.09003 * 109.47073 * 59.99674 * 9 8 7 36 36 H 1.08997 * 109.47538 * 180.02562 * 10 8 7 37 37 H 1.08995 * 109.47275 * 300.00738 * 10 8 7 38 38 H 1.09000 * 109.46744 * 60.00723 * 10 8 7 39 39 H 0.97002 * 120.00290 * 359.97438 * 12 11 6 40 40 H 1.09004 * 109.47062 * 299.99268 * 13 12 11 41 41 H 1.08995 * 109.47859 * 59.99434 * 13 12 11 42 42 H 0.96996 * 120.00104 * 359.97438 * 16 14 13 43 43 H 1.08999 * 109.47158 * 299.99618 * 17 16 14 44 44 H 1.08991 * 109.47126 * 60.00203 * 17 16 14 45 45 H 0.96996 * 120.00192 * 180.02562 * 21 20 18 46 46 H 1.07999 * 120.03520 * 0.02628 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2116 0.0000 4 6 1.2903 2.3745 0.0005 5 6 1.9148 3.6081 0.0058 6 6 3.2974 3.6859 0.0000 7 8 3.9111 4.9006 0.0000 8 6 3.0729 6.0510 0.1263 9 6 2.5419 6.4491 -1.2523 10 6 3.8811 7.2088 0.7155 11 6 4.0595 2.5199 -0.0001 12 7 5.4569 2.5959 0.0004 13 6 6.2572 1.3687 -0.0003 14 6 7.7217 1.7240 -0.0003 15 8 8.0633 2.8878 -0.0002 16 7 8.6518 0.7486 -0.0003 17 6 10.0755 1.0941 -0.0008 18 6 10.8986 -0.1683 -0.0014 19 1 10.4101 -1.1315 -0.0010 20 6 12.2754 -0.0935 -0.0014 21 7 12.8702 1.0794 -0.0014 22 14 13.2957 -1.6582 -0.0014 23 1 12.9797 -2.4552 -1.2140 24 1 14.7389 -1.3080 -0.0020 25 1 12.9799 -2.4552 1.2110 26 6 3.4309 1.2836 0.0005 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 0.2119 2.3163 0.0014 31 1 1.3238 4.5120 0.0108 32 1 2.2358 5.8199 0.7853 33 1 3.3790 6.6801 -1.9111 34 1 1.9021 7.3264 -1.1558 35 1 1.9660 5.6243 -1.6720 36 1 3.2417 8.0861 0.8123 37 1 4.2594 6.9251 1.6975 38 1 4.7181 7.4398 0.0566 39 1 5.8957 3.4610 0.0004 40 1 6.0251 0.7831 0.8893 41 1 6.0255 0.7842 -0.8907 42 1 8.3785 -0.1821 0.0000 43 1 10.3071 1.6788 -0.8910 44 1 10.3076 1.6793 0.8889 45 1 13.8387 1.1321 -0.0018 46 1 4.0193 0.3779 0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759776376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:34 Heat of formation + Delta-G solvation = -114.022594 kcal Electronic energy + Delta-G solvation = -26624.747369 eV Core-core repulsion = 22707.001296 eV Total energy + Delta-G solvation = -3917.746073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.55144 -40.64071 -39.98809 -38.10754 -36.29927 -35.66481 -34.40358 -33.92215 -31.38746 -30.57983 -29.26974 -28.27822 -27.71670 -27.22112 -24.77712 -23.96886 -22.47171 -21.84639 -21.33873 -19.84320 -18.91465 -18.58446 -17.95453 -17.33231 -17.07821 -16.81731 -16.52824 -16.34514 -16.27250 -16.11609 -15.61508 -15.43124 -15.27436 -14.86768 -14.46976 -14.26201 -14.07877 -13.88188 -13.74034 -13.49347 -13.32767 -13.27049 -13.09585 -12.96672 -12.88076 -12.68230 -12.64326 -12.24938 -12.11883 -11.93564 -11.53366 -11.50595 -11.34878 -10.94030 -10.87470 -10.80585 -9.90726 -9.12785 -8.29848 -8.09128 -6.46623 0.44813 0.63837 1.43410 1.47465 1.55541 1.61514 2.00190 2.33192 2.35625 2.49816 2.83891 2.85902 3.05241 3.80849 3.84211 3.88405 4.02789 4.14552 4.19828 4.26489 4.31721 4.37957 4.43141 4.50056 4.57847 4.64562 4.71126 4.77051 4.83410 4.85516 4.87957 5.00158 5.08131 5.21718 5.22943 5.27702 5.37918 5.39629 5.43788 5.59069 5.64328 5.82296 6.09373 6.46715 6.60611 6.64440 6.78022 6.83552 7.21153 7.38588 8.82180 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.002564 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.663528 B =10918.584084 C =12898.385390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.133 3.867 4 C -0.228 4.228 5 C -0.122 4.122 6 C 0.010 3.990 7 O -0.337 6.337 8 C 0.073 3.927 9 C -0.175 4.175 10 C -0.149 4.149 11 C 0.218 3.782 12 N -0.734 5.734 13 C 0.119 3.881 14 C 0.492 3.508 15 O -0.596 6.596 16 N -0.700 5.700 17 C 0.266 3.734 18 C -0.557 4.557 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.985 3.015 23 H -0.262 1.262 24 H -0.286 1.286 25 H -0.261 1.261 26 C -0.216 4.216 27 H 0.115 0.885 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.084 0.916 33 H 0.052 0.948 34 H 0.094 0.906 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.407 0.593 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.412 0.588 43 H -0.011 1.011 44 H -0.011 1.011 45 H 0.269 0.731 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.261 2.720 0.192 30.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.249 6.249 3 C 0.087 3.913 4 C -0.248 4.248 5 C -0.142 4.142 6 C -0.038 4.038 7 O -0.253 6.253 8 C 0.017 3.983 9 C -0.232 4.232 10 C -0.206 4.206 11 C 0.114 3.886 12 N -0.367 5.367 13 C -0.008 4.008 14 C 0.279 3.721 15 O -0.478 6.478 16 N -0.350 5.350 17 C 0.144 3.856 18 C -0.595 4.595 19 H 0.104 0.896 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.808 3.192 23 H -0.186 1.186 24 H -0.212 1.212 25 H -0.186 1.186 26 C -0.240 4.240 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.112 0.888 35 H 0.079 0.921 36 H 0.120 0.880 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.244 0.756 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.249 0.751 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.078 0.922 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -29.436 3.289 0.176 29.620 hybrid contribution 0.874 -0.148 -0.036 0.888 sum -28.562 3.141 0.140 28.734 Atomic orbital electron populations 1.23310 0.76564 1.05313 1.02250 1.86040 1.23326 1.26684 1.88850 1.18634 0.91364 0.84825 0.96489 1.21025 1.00849 0.90787 1.12170 1.21010 0.91665 0.99332 1.02166 1.18503 0.91654 0.84291 1.09368 1.86094 1.37335 1.12385 1.89460 1.22604 0.93651 0.84055 0.97968 1.22354 1.01751 1.02931 0.96177 1.21889 1.00989 0.96903 1.00816 1.17010 0.82730 0.91509 0.97317 1.44335 1.02000 1.08322 1.82051 1.21103 0.85517 0.88711 1.05516 1.21214 0.89451 0.85490 0.75967 1.90645 1.83169 1.21235 1.52712 1.46088 1.06899 1.09784 1.72181 1.18573 0.76690 0.96121 0.94249 1.21598 0.91979 0.92901 1.53012 0.89570 1.26074 0.99305 1.00408 0.93827 1.70129 1.10576 1.26397 1.49903 0.85204 0.76556 0.77898 0.79552 1.18608 1.21188 1.18589 1.19720 0.92671 0.95928 1.15658 0.86653 0.91699 0.91729 0.83030 0.82959 0.89826 0.92852 0.88757 0.92076 0.87977 0.92647 0.92722 0.75593 0.86888 0.86940 0.75121 0.99320 0.99297 0.92237 0.84006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -6.72 10.50 -93.24 -0.98 -7.70 16 3 C 0.13 2.96 6.68 22.48 0.15 3.11 16 4 C -0.23 -4.24 9.03 22.39 0.20 -4.04 16 5 C -0.12 -2.45 8.24 22.33 0.18 -2.26 16 6 C 0.01 0.25 6.62 22.58 0.15 0.40 16 7 O -0.34 -9.09 9.04 -94.62 -0.86 -9.95 16 8 C 0.07 1.34 2.85 30.59 0.09 1.43 16 9 C -0.17 -2.65 9.17 71.98 0.66 -1.99 16 10 C -0.15 -2.51 9.56 71.98 0.69 -1.82 16 11 C 0.22 6.13 6.67 38.21 0.25 6.39 16 12 N -0.73 -23.01 5.70 -342.74 -1.95 -24.97 16 13 C 0.12 3.39 5.40 85.63 0.46 3.86 16 14 C 0.49 19.73 7.90 87.66 0.69 20.42 16 15 O -0.60 -29.69 15.67 -3.05 -0.05 -29.74 16 16 N -0.70 -29.15 5.55 -466.79 -2.59 -31.74 16 17 C 0.27 14.61 5.43 85.63 0.46 15.07 16 18 C -0.56 -30.17 9.28 25.60 0.24 -29.93 16 19 H 0.09 4.17 7.60 -2.91 -0.02 4.15 16 20 C 0.00 0.19 5.46 84.66 0.46 0.66 16 21 N -0.93 -56.40 13.29 21.45 0.28 -56.12 16 22 Si 0.98 42.26 29.54 68.60 2.03 44.29 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 26 C -0.22 -5.39 9.25 22.48 0.21 -5.18 16 27 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 29 H 0.06 0.55 7.66 -2.39 -0.02 0.54 16 30 H 0.15 1.88 6.28 -2.91 -0.02 1.86 16 31 H 0.15 2.21 5.41 -2.91 -0.02 2.20 16 32 H 0.08 1.25 6.32 -2.38 -0.02 1.24 16 33 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.06 0.94 6.90 -2.39 -0.02 0.92 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.41 14.81 6.79 -92.71 -0.63 14.18 16 40 H 0.11 2.65 7.95 -2.38 -0.02 2.63 16 41 H 0.11 2.65 7.95 -2.39 -0.02 2.63 16 42 H 0.41 13.83 8.32 -92.71 -0.77 13.06 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 45 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.14 3.22 6.74 -2.91 -0.02 3.20 16 Total: -1.00 -75.42 380.96 1.51 -73.90 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: -0.39 Total: 34.60 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: 6.02 Total: 7.42 kcal Atomic # 7 Polarization: -108.57 SS G_CDS: -4.26 Total: -112.83 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -1.88 Total: -47.39 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -75.42 1.51 -73.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759776376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.118 kcal (2) G-P(sol) polarization free energy of solvation -75.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds