Wall clock time and date at job start Tue Mar 31 2020 15:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.43407 * 2 1 4 4 C 1.54895 * 110.48706 * 237.31776 * 2 1 3 5 5 C 1.54967 * 102.77801 * 203.40563 * 4 2 1 6 6 C 1.54266 * 104.15866 * 37.88763 * 5 4 2 7 7 H 1.09004 * 110.03076 * 95.75926 * 6 5 4 8 8 C 1.50697 * 110.03021 * 217.13623 * 6 5 4 9 9 O 1.20828 * 120.00136 * 117.90948 * 8 6 5 10 10 O 1.34231 * 120.00499 * 297.90733 * 8 6 5 11 11 C 1.45200 * 117.00542 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.47207 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99803 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.28017 * 12 11 10 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 11 16 16 C 1.50709 * 109.47273 * 89.99834 * 15 14 12 17 17 H 1.07999 * 119.99476 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00074 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47015 * 120.00082 * 20 18 16 23 23 H 1.48507 * 109.47126 * 239.99903 * 20 18 16 24 24 C 1.46496 * 120.00345 * 359.72090 * 14 12 11 25 25 C 1.53005 * 109.46942 * 90.00092 * 24 14 12 26 26 C 1.47196 * 109.47093 * 179.97438 * 25 24 14 27 27 N 9.80093 * 129.20601 * 300.82923 * 3 1 2 28 28 C 1.53868 * 106.64114 * 336.44362 * 6 5 4 29 29 H 1.08995 * 109.47702 * 297.45571 * 1 2 3 30 30 H 1.09003 * 109.47489 * 57.45877 * 1 2 3 31 31 H 1.09000 * 109.47369 * 177.45537 * 1 2 3 32 32 H 1.08997 * 110.75794 * 321.69323 * 4 2 1 33 33 H 1.09004 * 110.75599 * 84.88343 * 4 2 1 34 34 H 1.08999 * 110.47607 * 279.23518 * 5 4 2 35 35 H 1.09004 * 110.53240 * 156.56892 * 5 4 2 36 36 H 1.09009 * 109.46588 * 60.00092 * 11 10 8 37 37 H 1.08998 * 109.46989 * 300.00636 * 11 10 8 38 38 H 1.09000 * 109.46889 * 209.99487 * 15 14 12 39 39 H 1.09001 * 109.47460 * 330.00097 * 15 14 12 40 40 H 0.97000 * 120.00447 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47364 * 210.00706 * 24 14 12 42 42 H 1.09002 * 109.47090 * 330.00257 * 24 14 12 43 43 H 1.08998 * 109.46999 * 300.00039 * 25 24 14 44 44 H 1.08997 * 109.46656 * 60.00331 * 25 24 14 45 45 H 1.09008 * 110.03051 * 119.25995 * 28 6 5 46 46 H 1.09002 * 110.03645 * 240.63917 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0720 -0.7835 -1.2213 5 6 3.4912 -1.2000 -0.7588 6 6 3.3165 -1.5396 0.7359 7 1 3.1696 -2.6126 0.8603 8 6 4.5280 -1.0915 1.5121 9 8 4.4159 -0.2557 2.3774 10 8 5.7316 -1.6209 1.2422 11 6 6.8540 -1.1416 2.0289 12 6 8.1127 -1.8432 1.5878 13 8 8.0682 -2.6658 0.6977 14 7 9.2868 -1.5602 2.1860 15 6 10.5093 -2.2467 1.7612 16 6 11.1698 -1.4600 0.6584 17 1 10.7233 -0.5409 0.3087 18 6 12.3441 -1.9136 0.0960 19 7 12.8875 -3.0331 0.5216 20 14 13.1624 -0.9390 -1.2714 21 1 12.3562 0.2726 -1.5664 22 1 14.5259 -0.5349 -0.8435 23 1 13.2554 -1.7803 -2.4916 24 6 9.3406 -0.5663 3.2608 25 6 9.1142 -1.2579 4.6068 26 6 9.1689 -0.2593 5.6868 27 7 9.2090 0.5103 6.5214 28 6 2.0699 -0.7774 1.2181 29 1 -0.3634 0.4738 0.9118 30 1 -0.3634 0.5528 -0.8663 31 1 -0.3634 -1.0266 -0.0456 32 1 1.4580 -1.6618 -1.4203 33 1 2.1221 -0.1416 -2.1008 34 1 4.1907 -0.3734 -0.8829 35 1 3.8319 -2.0755 -1.3116 36 1 6.6729 -1.3484 3.0838 37 1 6.9672 -0.0673 1.8836 38 1 11.1918 -2.3300 2.6070 39 1 10.2588 -3.2430 1.3969 40 1 13.7134 -3.3525 0.1257 41 1 10.3175 -0.0830 3.2603 42 1 8.5647 0.1827 3.1022 43 1 8.1372 -1.7410 4.6072 44 1 9.8901 -2.0068 4.7653 45 1 1.3175 -1.4804 1.5758 46 1 2.3410 -0.0840 2.0143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776420971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:49 Heat of formation + Delta-G solvation = -111.816184 kcal Electronic energy + Delta-G solvation = -27002.020644 eV Core-core repulsion = 23084.370248 eV Total energy + Delta-G solvation = -3917.650396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 8.61 seconds Orbital eigenvalues (eV) -40.88115 -39.34728 -38.19531 -36.91727 -36.30935 -35.28566 -32.96508 -31.98741 -30.92807 -29.52086 -29.04078 -26.87666 -25.61765 -24.11001 -23.08396 -22.22732 -20.66498 -19.68772 -18.85516 -18.03455 -17.73203 -16.82396 -16.62852 -16.43887 -16.31553 -15.56544 -15.22785 -14.91814 -14.75080 -14.42924 -14.23660 -13.90450 -13.73010 -13.28313 -13.23352 -13.00238 -12.70092 -12.49121 -12.32258 -12.29319 -12.11519 -11.88809 -11.79577 -11.58312 -11.34975 -11.18156 -11.06875 -11.03486 -10.97706 -10.92847 -10.76234 -10.70702 -10.65108 -10.40034 -10.23974 -9.75437 -9.15363 -8.52072 -7.97631 -6.13643 -4.18504 2.11016 2.39110 2.70472 2.79657 3.10395 3.25805 3.34212 3.37617 3.59584 4.08688 4.16289 4.24536 4.37750 4.48148 4.76139 4.80338 4.92582 4.96842 4.99727 5.05302 5.13241 5.14498 5.17541 5.21121 5.22403 5.29075 5.32391 5.42263 5.53267 5.60485 5.68606 5.74883 5.77367 5.85911 5.90391 5.99696 6.05176 6.12841 6.33688 6.82016 7.24932 7.32923 7.55416 7.66153 7.82299 8.08103 8.11320 8.70472 8.87923 9.47313 10.94602 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003115 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.731934 B = 8987.375760 C =10904.354098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.076 0.924 4 C -0.120 4.120 5 C -0.113 4.113 6 C -0.084 4.084 7 H 0.112 0.888 8 C 0.466 3.534 9 O -0.511 6.511 10 O -0.326 6.326 11 C 0.044 3.956 12 C 0.509 3.491 13 O -0.509 6.509 14 N -0.592 5.592 15 C 0.246 3.754 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.113 3.887 25 C -0.051 4.051 26 C 0.216 3.784 27 N -0.442 5.442 28 C -0.118 4.118 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.074 0.926 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.530 2.972 1.552 20.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.104 4.104 7 H 0.130 0.870 8 C 0.309 3.691 9 O -0.400 6.400 10 O -0.240 6.240 11 C -0.033 4.033 12 C 0.294 3.706 13 O -0.383 6.383 14 N -0.325 5.325 15 C 0.127 3.873 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.725 3.275 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.014 4.014 25 C -0.092 4.092 26 C -0.102 4.102 27 N -0.119 5.119 28 C -0.156 4.156 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.310 3.777 2.539 20.814 hybrid contribution 0.723 0.311 -0.812 1.131 sum -19.587 4.088 1.727 20.083 Atomic orbital electron populations 1.21792 0.94756 1.01843 1.01700 1.21993 0.95644 0.99558 0.94518 0.90564 1.22622 0.95454 1.00046 0.97641 1.22346 0.97884 1.02690 0.92148 1.21703 0.89886 1.02858 0.95913 0.87028 1.23794 0.84798 0.78891 0.81634 1.90631 1.86002 1.31451 1.31884 1.86588 1.15981 1.62421 1.59038 1.22990 0.84519 0.99992 0.95800 1.19744 0.83798 0.83663 0.83416 1.90741 1.85439 1.33223 1.28908 1.48159 1.09030 1.40913 1.34441 1.19428 0.78632 0.93619 0.95580 1.21439 1.07419 1.08718 1.19348 0.92238 1.24914 0.96983 0.95067 0.96982 1.69924 1.19989 1.20797 1.42432 0.86446 0.79070 0.80042 0.81896 1.19769 1.20952 1.20835 1.21396 1.04817 0.90865 0.84287 1.19889 1.05998 0.94396 0.88964 1.29031 0.92910 0.94128 0.94138 1.81209 1.09211 1.10411 1.11106 1.22348 0.94584 0.99575 0.99055 0.92633 0.92631 0.92525 0.90946 0.91065 0.90889 0.89793 0.88760 0.88583 0.94298 0.93331 0.92645 0.88190 0.90662 0.87670 0.86203 0.90699 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.12 37.15 0.34 -0.54 16 2 C -0.10 -0.74 3.46 -88.96 -0.31 -1.05 16 3 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.12 -0.87 6.33 -24.69 -0.16 -1.03 16 5 C -0.11 -1.03 6.34 -25.03 -0.16 -1.19 16 6 C -0.08 -0.82 3.40 -90.66 -0.31 -1.13 16 7 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 8 C 0.47 6.08 7.10 36.00 0.26 6.34 16 9 O -0.51 -7.48 14.96 -18.75 -0.28 -7.76 16 10 O -0.33 -4.93 9.73 -45.91 -0.45 -5.37 16 11 C 0.04 0.64 4.50 36.01 0.16 0.80 16 12 C 0.51 9.44 7.75 -10.98 -0.09 9.35 16 13 O -0.51 -11.88 16.08 -14.11 -0.23 -12.11 16 14 N -0.59 -10.61 2.46 -175.06 -0.43 -11.04 16 15 C 0.25 5.67 5.16 -5.19 -0.03 5.64 16 16 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.07 13.29 55.43 0.74 -24.34 16 20 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 21 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.11 1.47 5.16 -4.04 -0.02 1.45 16 25 C -0.05 -0.53 6.02 -29.52 -0.18 -0.70 16 26 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 27 N -0.44 -6.60 18.54 42.15 0.78 -5.82 16 28 C -0.12 -1.01 5.97 -25.62 -0.15 -1.17 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.07 0.46 8.04 -51.93 -0.42 0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.10 7.15 -51.92 -0.37 0.73 16 37 H 0.10 1.25 7.40 -51.93 -0.38 0.87 16 38 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 42 H 0.08 0.83 6.45 -51.93 -0.33 0.50 16 43 H 0.11 0.89 7.20 -51.93 -0.37 0.52 16 44 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.07 0.53 7.84 -51.92 -0.41 0.13 16 46 H 0.09 0.93 6.40 -51.93 -0.33 0.60 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -33.40 389.63 -7.57 -40.97 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.18 Total: -2.81 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -1.38 Total: 6.45 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 1.09 Total: -41.19 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.95 Total: -25.25 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.40 -7.57 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776420971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.842 kcal (2) G-P(sol) polarization free energy of solvation -33.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.61 seconds