Wall clock time and date at job start Tue Mar 31 2020 15:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.43407 * 2 1 4 4 C 1.54895 * 110.48706 * 237.31776 * 2 1 3 5 5 C 1.54967 * 102.77801 * 203.40563 * 4 2 1 6 6 C 1.54266 * 104.15866 * 37.88763 * 5 4 2 7 7 H 1.09004 * 110.03076 * 95.75926 * 6 5 4 8 8 C 1.50697 * 110.03021 * 217.13623 * 6 5 4 9 9 O 1.20828 * 120.00136 * 117.90948 * 8 6 5 10 10 O 1.34231 * 120.00499 * 297.90733 * 8 6 5 11 11 C 1.45200 * 117.00542 * 179.97438 * 10 8 6 12 12 C 1.50700 * 109.47207 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99803 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99675 * 180.28017 * 12 11 10 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 11 16 16 C 1.50709 * 109.47273 * 89.99834 * 15 14 12 17 17 H 1.07999 * 119.99476 * 359.97438 * 16 15 14 18 18 C 1.37873 * 120.00210 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99914 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00074 * 179.97438 * 18 16 15 21 21 H 1.48490 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48508 * 109.47015 * 120.00082 * 20 18 16 23 23 H 1.48507 * 109.47126 * 239.99903 * 20 18 16 24 24 C 1.46496 * 120.00345 * 359.72090 * 14 12 11 25 25 C 1.53005 * 109.46942 * 90.00092 * 24 14 12 26 26 C 1.47196 * 109.47093 * 179.97438 * 25 24 14 27 27 N 9.80093 * 129.20601 * 300.82923 * 3 1 2 28 28 C 1.53868 * 106.64114 * 336.44362 * 6 5 4 29 29 H 1.08995 * 109.47702 * 297.45571 * 1 2 3 30 30 H 1.09003 * 109.47489 * 57.45877 * 1 2 3 31 31 H 1.09000 * 109.47369 * 177.45537 * 1 2 3 32 32 H 1.08997 * 110.75794 * 321.69323 * 4 2 1 33 33 H 1.09004 * 110.75599 * 84.88343 * 4 2 1 34 34 H 1.08999 * 110.47607 * 279.23518 * 5 4 2 35 35 H 1.09004 * 110.53240 * 156.56892 * 5 4 2 36 36 H 1.09009 * 109.46588 * 60.00092 * 11 10 8 37 37 H 1.08998 * 109.46989 * 300.00636 * 11 10 8 38 38 H 1.09000 * 109.46889 * 209.99487 * 15 14 12 39 39 H 1.09001 * 109.47460 * 330.00097 * 15 14 12 40 40 H 0.97000 * 120.00447 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47364 * 210.00706 * 24 14 12 42 42 H 1.09002 * 109.47090 * 330.00257 * 24 14 12 43 43 H 1.08998 * 109.46999 * 300.00039 * 25 24 14 44 44 H 1.08997 * 109.46656 * 60.00331 * 25 24 14 45 45 H 1.09008 * 110.03051 * 119.25995 * 28 6 5 46 46 H 1.09002 * 110.03645 * 240.63917 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0720 -0.7835 -1.2213 5 6 3.4912 -1.2000 -0.7588 6 6 3.3165 -1.5396 0.7359 7 1 3.1696 -2.6126 0.8603 8 6 4.5280 -1.0915 1.5121 9 8 4.4159 -0.2557 2.3774 10 8 5.7316 -1.6209 1.2422 11 6 6.8540 -1.1416 2.0289 12 6 8.1127 -1.8432 1.5878 13 8 8.0682 -2.6658 0.6977 14 7 9.2868 -1.5602 2.1860 15 6 10.5093 -2.2467 1.7612 16 6 11.1698 -1.4600 0.6584 17 1 10.7233 -0.5409 0.3087 18 6 12.3441 -1.9136 0.0960 19 7 12.8875 -3.0331 0.5216 20 14 13.1624 -0.9390 -1.2714 21 1 12.3562 0.2726 -1.5664 22 1 14.5259 -0.5349 -0.8435 23 1 13.2554 -1.7803 -2.4916 24 6 9.3406 -0.5663 3.2608 25 6 9.1142 -1.2579 4.6068 26 6 9.1689 -0.2593 5.6868 27 7 9.2090 0.5103 6.5214 28 6 2.0699 -0.7774 1.2181 29 1 -0.3634 0.4738 0.9118 30 1 -0.3634 0.5528 -0.8663 31 1 -0.3634 -1.0266 -0.0456 32 1 1.4580 -1.6618 -1.4203 33 1 2.1221 -0.1416 -2.1008 34 1 4.1907 -0.3734 -0.8829 35 1 3.8319 -2.0755 -1.3116 36 1 6.6729 -1.3484 3.0838 37 1 6.9672 -0.0673 1.8836 38 1 11.1918 -2.3300 2.6070 39 1 10.2588 -3.2430 1.3969 40 1 13.7134 -3.3525 0.1257 41 1 10.3175 -0.0830 3.2603 42 1 8.5647 0.1827 3.1022 43 1 8.1372 -1.7410 4.6072 44 1 9.8901 -2.0068 4.7653 45 1 1.3175 -1.4804 1.5758 46 1 2.3410 -0.0840 2.0143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776420971.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:29 Heat of formation + Delta-G solvation = -129.542502 kcal Electronic energy + Delta-G solvation = -27002.789315 eV Core-core repulsion = 23084.370248 eV Total energy + Delta-G solvation = -3918.419067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 7.73 seconds Orbital eigenvalues (eV) -41.93292 -40.71776 -39.01105 -38.05460 -37.41256 -36.71424 -34.88893 -32.66947 -32.23412 -30.76265 -29.86105 -28.47085 -26.36248 -25.38425 -24.63279 -23.26231 -21.38193 -20.52582 -20.20406 -19.03159 -18.90146 -18.39162 -17.92277 -17.67009 -17.57840 -16.91875 -16.29734 -16.08860 -15.77713 -15.63477 -15.49918 -14.88864 -14.54985 -14.46005 -14.43777 -13.93888 -13.83844 -13.74107 -13.60790 -13.57333 -13.19338 -12.97580 -12.82808 -12.74181 -12.68422 -12.54567 -12.29305 -12.20248 -12.06107 -11.80417 -11.75939 -11.71961 -11.65343 -11.53157 -11.42000 -11.27099 -10.70063 -10.59051 -9.58558 -8.18816 -6.30538 1.09951 1.28759 1.39998 1.42949 1.52878 1.57928 1.78586 1.81652 2.31830 2.45261 3.03268 3.13998 3.43756 3.54595 3.55694 3.71313 3.89131 3.98012 4.06906 4.09720 4.14081 4.33496 4.40381 4.48322 4.51273 4.55233 4.68994 4.74041 4.78543 4.97689 5.00318 5.02347 5.04431 5.10106 5.15112 5.24175 5.29186 5.32735 5.38397 5.43759 5.56169 5.56940 5.83069 6.10805 6.52892 6.58551 6.67453 6.78596 7.24920 7.42003 8.88419 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.003115 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.731934 B = 8987.375760 C =10904.354098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.084 4.084 7 H 0.129 0.871 8 C 0.466 3.534 9 O -0.528 6.528 10 O -0.345 6.345 11 C 0.052 3.948 12 C 0.507 3.493 13 O -0.567 6.567 14 N -0.590 5.590 15 C 0.259 3.741 16 C -0.541 4.541 17 H 0.054 0.946 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.957 3.043 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.284 1.284 24 C 0.108 3.892 25 C -0.039 4.039 26 C 0.245 3.755 27 N -0.487 5.487 28 C -0.114 4.114 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.113 0.887 38 H 0.043 0.957 39 H 0.009 0.991 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.093 0.907 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.195 3.730 1.674 22.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.103 4.103 7 H 0.147 0.853 8 C 0.311 3.689 9 O -0.418 6.418 10 O -0.261 6.261 11 C -0.025 4.025 12 C 0.294 3.706 13 O -0.445 6.445 14 N -0.322 5.322 15 C 0.139 3.861 16 C -0.580 4.580 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.211 1.211 24 C -0.017 4.017 25 C -0.080 4.080 26 C -0.073 4.073 27 N -0.165 5.165 28 C -0.152 4.152 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.095 0.905 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.111 0.889 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.988 4.577 2.701 22.621 hybrid contribution 1.229 0.070 -0.847 1.494 sum -20.759 4.647 1.854 21.353 Atomic orbital electron populations 1.21769 0.93424 1.02566 1.02020 1.21986 0.96711 0.98837 0.94155 0.91659 1.22610 0.94179 1.00658 0.97609 1.22365 0.98882 1.02130 0.91954 1.21907 0.88711 1.04023 0.95684 0.85275 1.24419 0.84688 0.78348 0.81481 1.90619 1.86109 1.32236 1.32803 1.86597 1.16775 1.63062 1.59630 1.22937 0.82465 0.99941 0.97166 1.20449 0.85001 0.82856 0.82317 1.90711 1.86429 1.35876 1.31525 1.47995 1.07535 1.41232 1.35396 1.18918 0.80412 0.91869 0.94896 1.21762 1.07531 1.08621 1.20072 0.92807 1.25695 0.97814 0.95992 0.99168 1.70018 1.20503 1.22143 1.43742 0.85517 0.78465 0.78710 0.79017 1.19311 1.19897 1.21055 1.21625 1.05674 0.90359 0.84010 1.19846 1.07929 0.93682 0.86581 1.29112 0.91385 0.93253 0.93512 1.81252 1.10950 1.11741 1.12602 1.22348 0.94409 0.99539 0.98875 0.92599 0.92067 0.91605 0.89450 0.90538 0.92558 0.89759 0.85456 0.86903 0.93917 0.97326 0.92511 0.88803 0.87991 0.84879 0.85422 0.88877 0.91006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.12 71.98 0.66 -0.75 16 2 C -0.10 -1.32 3.46 -9.72 -0.03 -1.35 16 3 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 4 C -0.11 -1.43 6.33 31.91 0.20 -1.23 16 5 C -0.12 -2.00 6.34 31.70 0.20 -1.80 16 6 C -0.08 -1.52 3.40 -10.82 -0.04 -1.55 16 7 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 8 C 0.47 11.61 7.10 71.24 0.51 12.12 16 9 O -0.53 -14.69 14.96 21.96 0.33 -14.36 16 10 O -0.35 -10.13 9.73 -45.07 -0.44 -10.57 16 11 C 0.05 1.39 4.50 71.24 0.32 1.71 16 12 C 0.51 18.61 7.75 87.66 0.68 19.29 16 13 O -0.57 -27.19 16.08 15.76 0.25 -26.94 16 14 N -0.59 -20.80 2.46 -826.15 -2.03 -22.83 16 15 C 0.26 12.20 5.16 85.64 0.44 12.64 16 16 C -0.54 -28.69 9.39 25.60 0.24 -28.45 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 18 C 0.01 0.69 5.46 84.65 0.46 1.15 16 19 N -0.92 -52.68 13.29 21.45 0.28 -52.40 16 20 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 C 0.11 2.59 5.16 86.38 0.45 3.04 16 25 C -0.04 -0.71 6.02 28.79 0.17 -0.54 16 26 C 0.24 5.43 15.43 89.44 1.38 6.81 16 27 N -0.49 -13.83 18.54 20.00 0.37 -13.46 16 28 C -0.11 -1.76 5.97 31.32 0.19 -1.57 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.55 8.12 -2.39 -0.02 0.53 16 32 H 0.09 0.87 8.04 -2.39 -0.02 0.85 16 33 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.06 1.15 7.85 -2.39 -0.02 1.13 16 35 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.13 2.56 7.15 -2.38 -0.02 2.54 16 37 H 0.11 2.67 7.40 -2.39 -0.02 2.65 16 38 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 39 H 0.01 0.47 7.42 -2.39 -0.02 0.46 16 40 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 41 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 42 H 0.10 1.95 6.45 -2.39 -0.02 1.93 16 43 H 0.13 1.75 7.20 -2.39 -0.02 1.74 16 44 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.09 1.09 7.84 -2.38 -0.02 1.07 16 46 H 0.07 1.40 6.40 -2.39 -0.02 1.39 16 Total: -1.00 -74.37 389.63 7.60 -66.77 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.98 Total: 9.12 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 5.83 Total: 19.52 kcal Atomic # 7 Polarization: -87.32 SS G_CDS: -1.37 Total: -88.69 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: 0.14 Total: -51.87 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.37 7.60 -66.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776420971.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.771 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.73 seconds