Wall clock time and date at job start Tue Mar 31 2020 15:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54265 * 110.48514 * 237.39010 * 2 1 3 5 5 C 1.53877 * 106.59605 * 217.71057 * 4 2 1 6 6 C 1.54463 * 106.68421 * 0.15594 * 5 4 2 7 7 H 1.09003 * 110.40626 * 264.75463 * 6 5 4 8 8 C 1.50709 * 110.65945 * 142.05352 * 6 5 4 9 9 O 1.20826 * 119.99986 * 245.23989 * 8 6 5 10 10 O 1.34225 * 119.99667 * 65.24146 * 8 6 5 11 11 C 1.45208 * 116.99716 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.46972 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00488 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99844 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99943 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47602 * 90.00119 * 15 14 12 17 17 H 1.08002 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00177 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47223 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47209 * 119.99906 * 20 18 16 23 23 H 1.48502 * 109.47133 * 239.99682 * 20 18 16 24 24 C 1.46500 * 119.99981 * 0.02562 * 14 12 11 25 25 C 1.53004 * 109.46901 * 90.00242 * 24 14 12 26 26 C 1.47193 * 109.46854 * 180.02562 * 25 24 14 27 27 N 9.01828 * 110.33172 * 112.12805 * 5 1 2 28 28 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 29 29 H 1.09003 * 109.46875 * 297.38667 * 1 2 3 30 30 H 1.09002 * 109.47508 * 57.38536 * 1 2 3 31 31 H 1.09000 * 109.47112 * 177.38719 * 1 2 3 32 32 H 1.08995 * 110.03137 * 336.98981 * 4 2 1 33 33 H 1.08993 * 110.03408 * 98.42715 * 4 2 1 34 34 H 1.08999 * 110.03493 * 119.28247 * 5 4 2 35 35 H 1.09003 * 110.03187 * 240.66884 * 5 4 2 36 36 H 1.09006 * 109.46799 * 299.99736 * 11 10 8 37 37 H 1.08993 * 109.46908 * 59.99479 * 11 10 8 38 38 H 1.09008 * 109.47367 * 210.00130 * 15 14 12 39 39 H 1.09005 * 109.47397 * 329.99840 * 15 14 12 40 40 H 0.97000 * 119.99862 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.46853 * 209.99989 * 24 14 12 42 42 H 1.09000 * 109.47390 * 329.99839 * 24 14 12 43 43 H 1.09007 * 109.46756 * 299.99755 * 25 24 14 44 44 H 1.08993 * 109.47116 * 59.99811 * 25 24 14 45 45 H 1.09002 * 110.75856 * 274.93753 * 28 2 1 46 46 H 1.09006 * 110.75640 * 38.12739 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0699 -0.7788 -1.2173 5 6 3.3165 -1.5405 -0.7341 6 6 3.4905 -1.2020 0.7629 7 1 4.1917 -0.3767 0.8870 8 6 3.9568 -2.4119 1.5310 9 8 3.2417 -2.9079 2.3692 10 8 5.1664 -2.9385 1.2838 11 6 5.5493 -4.1038 2.0609 12 6 6.9277 -4.5520 1.6482 13 8 7.5284 -3.9485 0.7846 14 7 7.4933 -5.6229 2.2396 15 6 8.8334 -6.0582 1.8389 16 6 9.8636 -5.3607 2.6893 17 1 9.5512 -4.6625 3.4519 18 6 11.2049 -5.6130 2.4933 19 7 11.5852 -6.4628 1.5644 20 14 12.4817 -4.7478 3.5470 21 1 11.8000 -3.8479 4.5117 22 1 13.2778 -5.7579 4.2893 23 1 13.3825 -3.9493 2.6774 24 6 6.7679 -6.3516 3.2832 25 6 5.9362 -7.4651 2.6434 26 6 5.2069 -8.1969 3.6919 27 7 4.6455 -8.7614 4.5024 28 6 2.0721 -0.7819 1.2222 29 1 -0.3633 0.4727 0.9125 30 1 -0.3634 0.5539 -0.8656 31 1 -0.3633 -1.0266 -0.0468 32 1 1.3176 -1.4822 -1.5740 33 1 2.3411 -0.0857 -2.0136 34 1 3.1693 -2.6135 -0.8564 35 1 4.1927 -1.2176 -1.2965 36 1 5.5519 -3.8489 3.1207 37 1 4.8371 -4.9094 1.8826 38 1 8.9207 -7.1364 1.9736 39 1 8.9983 -5.8086 0.7906 40 1 12.5288 -6.6400 1.4262 41 1 7.4800 -6.7870 3.9841 42 1 6.1087 -5.6651 3.8144 43 1 5.2241 -7.0296 1.9424 44 1 6.5955 -8.1516 2.1122 45 1 2.1251 -0.1381 2.1002 46 1 1.4562 -1.6583 1.4243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776420972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:53 Heat of formation + Delta-G solvation = -112.777094 kcal Electronic energy + Delta-G solvation = -26950.494257 eV Core-core repulsion = 23032.802193 eV Total energy + Delta-G solvation = -3917.692064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83275 -39.33515 -38.24189 -36.91426 -36.30293 -35.28142 -32.96332 -31.99335 -30.92650 -29.54840 -29.06026 -26.88163 -25.65489 -24.10905 -23.11325 -22.27936 -20.22687 -20.15128 -18.86665 -17.83483 -17.65836 -16.87886 -16.69232 -16.47416 -16.03963 -16.01904 -15.40351 -14.77159 -14.61363 -14.39061 -14.01616 -13.86885 -13.67254 -13.63191 -13.32879 -12.83917 -12.79275 -12.48993 -12.45630 -12.21779 -12.15299 -11.92201 -11.78226 -11.54254 -11.34716 -11.21438 -11.12062 -11.06895 -10.97723 -10.93629 -10.78194 -10.70438 -10.64248 -10.40768 -10.23831 -9.75309 -9.15127 -8.51957 -7.97478 -6.13585 -4.18369 2.10919 2.39321 2.70273 2.79542 3.10542 3.25913 3.34320 3.37756 3.59611 4.07523 4.13058 4.21853 4.37813 4.46417 4.77242 4.81031 4.91167 4.95485 5.00299 5.01685 5.07494 5.13410 5.18558 5.19386 5.22497 5.25673 5.29563 5.42194 5.48624 5.54523 5.68448 5.74991 5.76164 5.82922 5.92890 5.96233 5.99832 6.11499 6.32527 6.82083 7.25075 7.33058 7.55470 7.66674 7.82424 8.08280 8.11482 8.70664 8.88075 9.47404 10.94655 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.002951 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.217525 B = 9487.112838 C =11088.927757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.078 0.922 4 C -0.120 4.120 5 C -0.112 4.112 6 C -0.087 4.087 7 H 0.114 0.886 8 C 0.467 3.533 9 O -0.511 6.511 10 O -0.327 6.327 11 C 0.045 3.955 12 C 0.509 3.491 13 O -0.509 6.509 14 N -0.592 5.592 15 C 0.246 3.754 16 C -0.530 4.530 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.898 3.102 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.113 3.887 25 C -0.051 4.051 26 C 0.216 3.784 27 N -0.442 5.442 28 C -0.104 4.104 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.039 0.961 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.100 0.900 42 H 0.075 0.925 43 H 0.105 0.895 44 H 0.120 0.880 45 H 0.073 0.927 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.079 8.912 -3.696 21.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.096 0.904 4 C -0.158 4.158 5 C -0.150 4.150 6 C -0.106 4.106 7 H 0.132 0.868 8 C 0.310 3.690 9 O -0.399 6.399 10 O -0.241 6.241 11 C -0.033 4.033 12 C 0.294 3.706 13 O -0.383 6.383 14 N -0.325 5.325 15 C 0.127 3.873 16 C -0.569 4.569 17 H 0.078 0.922 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.726 3.274 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.014 4.014 25 C -0.092 4.092 26 C -0.102 4.102 27 N -0.119 5.119 28 C -0.142 4.142 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.093 0.907 43 H 0.123 0.877 44 H 0.138 0.862 45 H 0.092 0.908 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.585 8.132 -2.802 21.391 hybrid contribution 1.062 0.419 0.491 1.243 sum -18.524 8.552 -2.311 20.533 Atomic orbital electron populations 1.21793 0.94629 1.02008 1.01702 1.21983 0.95850 0.99360 0.94466 0.90384 1.22240 0.96881 0.98956 0.97702 1.22123 0.99234 1.01216 0.92429 1.21962 0.99019 0.93767 0.95866 0.86801 1.23728 0.79120 0.84833 0.81278 1.90654 1.55345 1.61166 1.32750 1.86593 1.34453 1.42938 1.60145 1.22983 0.96519 0.87346 0.96441 1.19747 0.86179 0.81566 0.83134 1.90741 1.63377 1.53330 1.30867 1.48160 1.19077 1.27924 1.37384 1.19427 0.74913 0.95348 0.97567 1.21440 0.90931 1.25713 1.18839 0.92240 1.24917 0.98459 0.95157 0.95422 1.69925 1.16525 1.34535 1.32149 0.86444 0.81342 0.79455 0.80204 1.19770 1.20952 1.20841 1.21397 0.95881 0.93085 0.91006 1.19887 0.98445 0.97864 0.93038 1.29043 0.93378 0.93556 0.94242 1.81221 1.10252 1.09962 1.10499 1.22559 0.93095 1.00793 0.97743 0.92557 0.92586 0.92470 0.91327 0.91282 0.91197 0.89999 0.88546 0.88796 0.94303 0.93333 0.92647 0.88189 0.90653 0.87687 0.86200 0.90799 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 9.14 37.16 0.34 -0.53 16 2 C -0.10 -0.66 3.46 -88.96 -0.31 -0.97 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.12 -0.83 6.37 -25.61 -0.16 -0.99 16 5 C -0.11 -0.98 6.38 -25.51 -0.16 -1.14 16 6 C -0.09 -0.85 3.37 -90.00 -0.30 -1.15 16 7 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 8 C 0.47 6.12 7.12 36.01 0.26 6.38 16 9 O -0.51 -7.53 15.46 -18.75 -0.29 -7.82 16 10 O -0.33 -4.96 9.76 -45.89 -0.45 -5.41 16 11 C 0.04 0.64 4.50 36.00 0.16 0.80 16 12 C 0.51 9.45 7.75 -10.99 -0.09 9.37 16 13 O -0.51 -11.90 16.08 -14.11 -0.23 -12.13 16 14 N -0.59 -10.62 2.46 -175.06 -0.43 -11.05 16 15 C 0.25 5.67 5.16 -5.20 -0.03 5.65 16 16 C -0.53 -13.92 9.39 -34.44 -0.32 -14.24 16 17 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 20 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.11 1.47 5.17 -4.04 -0.02 1.45 16 25 C -0.05 -0.53 6.03 -29.52 -0.18 -0.70 16 26 C 0.22 2.64 15.43 -20.76 -0.32 2.32 16 27 N -0.44 -6.60 18.54 42.16 0.78 -5.82 16 28 C -0.10 -0.88 5.36 -24.74 -0.13 -1.02 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.66 7.83 -51.93 -0.41 0.25 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.26 7.39 -51.93 -0.38 0.88 16 37 H 0.09 1.10 7.18 -51.93 -0.37 0.73 16 38 H 0.04 0.88 8.07 -51.92 -0.42 0.46 16 39 H 0.05 1.28 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.10 1.37 8.07 -51.93 -0.42 0.95 16 42 H 0.08 0.84 6.44 -51.93 -0.33 0.50 16 43 H 0.11 0.89 7.22 -51.93 -0.38 0.52 16 44 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.81 7.37 -51.93 -0.38 0.43 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -33.51 390.66 -7.60 -41.12 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -7.23 Total: -3.23 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.36 Total: 6.82 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: 1.09 Total: -41.22 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.96 Total: -25.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.51 -7.60 -41.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776420972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.658 kcal (2) G-P(sol) polarization free energy of solvation -33.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds