Wall clock time and date at job start Tue Mar 31 2020 15:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 110.53807 * 2 1 4 4 C 1.54265 * 110.48514 * 237.39010 * 2 1 3 5 5 C 1.53877 * 106.59605 * 217.71057 * 4 2 1 6 6 C 1.54463 * 106.68421 * 0.15594 * 5 4 2 7 7 H 1.09003 * 110.40626 * 264.75463 * 6 5 4 8 8 C 1.50709 * 110.65945 * 142.05352 * 6 5 4 9 9 O 1.20826 * 119.99986 * 245.23989 * 8 6 5 10 10 O 1.34225 * 119.99667 * 65.24146 * 8 6 5 11 11 C 1.45208 * 116.99716 * 180.02562 * 10 8 6 12 12 C 1.50696 * 109.46972 * 179.97438 * 11 10 8 13 13 O 1.21284 * 120.00488 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99844 * 179.97438 * 12 11 10 15 15 C 1.46495 * 119.99943 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47602 * 90.00119 * 15 14 12 17 17 H 1.08002 * 119.99817 * 359.97438 * 16 15 14 18 18 C 1.37882 * 120.00177 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99932 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99854 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47223 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47209 * 119.99906 * 20 18 16 23 23 H 1.48502 * 109.47133 * 239.99682 * 20 18 16 24 24 C 1.46500 * 119.99981 * 0.02562 * 14 12 11 25 25 C 1.53004 * 109.46901 * 90.00242 * 24 14 12 26 26 C 1.47193 * 109.46854 * 180.02562 * 25 24 14 27 27 N 9.01828 * 110.33172 * 112.12805 * 5 1 2 28 28 C 1.54887 * 110.48663 * 122.60992 * 2 1 3 29 29 H 1.09003 * 109.46875 * 297.38667 * 1 2 3 30 30 H 1.09002 * 109.47508 * 57.38536 * 1 2 3 31 31 H 1.09000 * 109.47112 * 177.38719 * 1 2 3 32 32 H 1.08995 * 110.03137 * 336.98981 * 4 2 1 33 33 H 1.08993 * 110.03408 * 98.42715 * 4 2 1 34 34 H 1.08999 * 110.03493 * 119.28247 * 5 4 2 35 35 H 1.09003 * 110.03187 * 240.66884 * 5 4 2 36 36 H 1.09006 * 109.46799 * 299.99736 * 11 10 8 37 37 H 1.08993 * 109.46908 * 59.99479 * 11 10 8 38 38 H 1.09008 * 109.47367 * 210.00130 * 15 14 12 39 39 H 1.09005 * 109.47397 * 329.99840 * 15 14 12 40 40 H 0.97000 * 119.99862 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.46853 * 209.99989 * 24 14 12 42 42 H 1.09000 * 109.47390 * 329.99839 * 24 14 12 43 43 H 1.09007 * 109.46756 * 299.99755 * 25 24 14 44 44 H 1.08993 * 109.47116 * 59.99811 * 25 24 14 45 45 H 1.09002 * 110.75856 * 274.93753 * 28 2 1 46 46 H 1.09006 * 110.75640 * 38.12739 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0208 0.0000 4 6 2.0699 -0.7788 -1.2173 5 6 3.3165 -1.5405 -0.7341 6 6 3.4905 -1.2020 0.7629 7 1 4.1917 -0.3767 0.8870 8 6 3.9568 -2.4119 1.5310 9 8 3.2417 -2.9079 2.3692 10 8 5.1664 -2.9385 1.2838 11 6 5.5493 -4.1038 2.0609 12 6 6.9277 -4.5520 1.6482 13 8 7.5284 -3.9485 0.7846 14 7 7.4933 -5.6229 2.2396 15 6 8.8334 -6.0582 1.8389 16 6 9.8636 -5.3607 2.6893 17 1 9.5512 -4.6625 3.4519 18 6 11.2049 -5.6130 2.4933 19 7 11.5852 -6.4628 1.5644 20 14 12.4817 -4.7478 3.5470 21 1 11.8000 -3.8479 4.5117 22 1 13.2778 -5.7579 4.2893 23 1 13.3825 -3.9493 2.6774 24 6 6.7679 -6.3516 3.2832 25 6 5.9362 -7.4651 2.6434 26 6 5.2069 -8.1969 3.6919 27 7 4.6455 -8.7614 4.5024 28 6 2.0721 -0.7819 1.2222 29 1 -0.3633 0.4727 0.9125 30 1 -0.3634 0.5539 -0.8656 31 1 -0.3633 -1.0266 -0.0468 32 1 1.3176 -1.4822 -1.5740 33 1 2.3411 -0.0857 -2.0136 34 1 3.1693 -2.6135 -0.8564 35 1 4.1927 -1.2176 -1.2965 36 1 5.5519 -3.8489 3.1207 37 1 4.8371 -4.9094 1.8826 38 1 8.9207 -7.1364 1.9736 39 1 8.9983 -5.8086 0.7906 40 1 12.5288 -6.6400 1.4262 41 1 7.4800 -6.7870 3.9841 42 1 6.1087 -5.6651 3.8144 43 1 5.2241 -7.0296 1.9424 44 1 6.5955 -8.1516 2.1122 45 1 2.1251 -0.1381 2.1002 46 1 1.4562 -1.6583 1.4243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776420972.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:52 Heat of formation + Delta-G solvation = -130.534781 kcal Electronic energy + Delta-G solvation = -26951.264288 eV Core-core repulsion = 23032.802193 eV Total energy + Delta-G solvation = -3918.462095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.89405 -40.70197 -39.02606 -38.05342 -37.41385 -36.71121 -34.88817 -32.65597 -32.23372 -30.76955 -29.87934 -28.47274 -26.39521 -25.38414 -24.63696 -23.31417 -21.05374 -20.80328 -20.27991 -18.96712 -18.71883 -18.39600 -17.92195 -17.81971 -17.31677 -16.88237 -16.71387 -16.14871 -15.84613 -15.70941 -14.97418 -14.74456 -14.70918 -14.50195 -14.34754 -14.07665 -13.85552 -13.73638 -13.60834 -13.56561 -13.22902 -13.05860 -12.97056 -12.73294 -12.59882 -12.54522 -12.23887 -12.19983 -12.05897 -11.80417 -11.77371 -11.74595 -11.65218 -11.54243 -11.47121 -11.19431 -10.69971 -10.59048 -9.58541 -8.18839 -6.30493 1.09525 1.28823 1.40032 1.42972 1.52908 1.57731 1.78533 1.81421 2.31938 2.45271 3.03270 3.13965 3.40775 3.53518 3.55660 3.72712 3.89193 3.98180 4.07422 4.10432 4.16760 4.31483 4.37566 4.45967 4.51130 4.53003 4.68765 4.76732 4.78498 4.89506 5.00263 5.02531 5.03785 5.11511 5.17017 5.27413 5.29517 5.33069 5.36730 5.38548 5.56186 5.59310 5.83080 6.10866 6.52871 6.58510 6.67493 6.78645 7.24964 7.42007 8.88393 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.002951 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.217525 B = 9487.112838 C =11088.927757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.113 4.113 6 C -0.088 4.088 7 H 0.126 0.874 8 C 0.468 3.532 9 O -0.528 6.528 10 O -0.346 6.346 11 C 0.052 3.948 12 C 0.507 3.493 13 O -0.567 6.567 14 N -0.590 5.590 15 C 0.259 3.741 16 C -0.541 4.541 17 H 0.054 0.946 18 C 0.012 3.988 19 N -0.924 5.924 20 Si 0.958 3.042 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.285 1.285 24 C 0.108 3.892 25 C -0.039 4.039 26 C 0.245 3.755 27 N -0.487 5.487 28 C -0.102 4.102 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.127 0.873 38 H 0.043 0.957 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.078 0.922 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 9.886 -3.161 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.107 0.893 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.107 4.107 7 H 0.144 0.856 8 C 0.313 3.687 9 O -0.417 6.417 10 O -0.262 6.262 11 C -0.025 4.025 12 C 0.294 3.706 13 O -0.446 6.446 14 N -0.322 5.322 15 C 0.139 3.861 16 C -0.580 4.580 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.199 1.199 23 H -0.211 1.211 24 C -0.017 4.017 25 C -0.080 4.080 26 C -0.073 4.073 27 N -0.165 5.165 28 C -0.139 4.139 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.144 0.856 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.097 0.903 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.071 9.087 -2.230 23.055 hybrid contribution 1.497 0.116 0.311 1.533 sum -19.574 9.203 -1.918 21.714 Atomic orbital electron populations 1.21788 0.93998 1.01938 1.02330 1.21982 0.96330 0.99552 0.93276 0.89256 1.22236 0.95980 0.99077 0.98102 1.22146 1.00237 1.00887 0.91776 1.22157 0.99892 0.92606 0.96086 0.85572 1.24352 0.78120 0.85171 0.81079 1.90639 1.55543 1.61890 1.33665 1.86604 1.35647 1.43299 1.60632 1.22934 0.94108 0.88450 0.97019 1.20453 0.87468 0.80712 0.81996 1.90711 1.65235 1.55139 1.33475 1.47996 1.17707 1.28287 1.38169 1.18917 0.77171 0.95133 0.94873 1.21762 0.91949 1.25475 1.18786 0.92793 1.25701 1.00513 0.95890 0.96594 1.70020 1.16974 1.35849 1.33557 0.85513 0.78934 0.78556 0.78684 1.19298 1.19898 1.21074 1.21628 0.96115 0.94097 0.89832 1.19843 0.98615 0.96987 0.92590 1.29121 0.92227 0.92500 0.93425 1.81264 1.11984 1.11469 1.11811 1.22560 0.92025 1.00544 0.98818 0.92295 0.91582 0.92950 0.91080 0.90030 0.92254 0.90019 0.86746 0.85571 0.93925 0.97339 0.92514 0.88790 0.87954 0.84928 0.85429 0.90323 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.14 71.98 0.66 -0.77 16 2 C -0.09 -1.05 3.46 -9.72 -0.03 -1.09 16 3 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -1.39 6.37 31.32 0.20 -1.19 16 5 C -0.11 -1.83 6.38 31.39 0.20 -1.63 16 6 C -0.09 -1.60 3.37 -10.39 -0.04 -1.64 16 7 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 8 C 0.47 11.70 7.12 71.24 0.51 12.21 16 9 O -0.53 -14.72 15.46 21.96 0.34 -14.38 16 10 O -0.35 -10.19 9.76 -45.02 -0.44 -10.63 16 11 C 0.05 1.39 4.50 71.23 0.32 1.71 16 12 C 0.51 18.63 7.75 87.66 0.68 19.31 16 13 O -0.57 -27.23 16.08 15.75 0.25 -26.98 16 14 N -0.59 -20.81 2.46 -826.15 -2.03 -22.84 16 15 C 0.26 12.20 5.16 85.63 0.44 12.64 16 16 C -0.54 -28.68 9.39 25.60 0.24 -28.44 16 17 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 18 C 0.01 0.67 5.46 84.66 0.46 1.14 16 19 N -0.92 -52.70 13.29 21.45 0.28 -52.41 16 20 Si 0.96 43.14 29.54 68.60 2.03 45.17 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 C 0.11 2.59 5.17 86.38 0.45 3.04 16 25 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 26 C 0.24 5.43 15.43 89.44 1.38 6.81 16 27 N -0.49 -13.83 18.54 20.01 0.37 -13.46 16 28 C -0.10 -1.57 5.36 31.88 0.17 -1.40 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.57 8.08 -2.39 -0.02 0.55 16 32 H 0.07 0.82 7.79 -2.39 -0.02 0.80 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 1.08 7.83 -2.39 -0.02 1.06 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.11 2.69 7.39 -2.38 -0.02 2.67 16 37 H 0.13 2.55 7.18 -2.39 -0.02 2.54 16 38 H 0.04 1.96 8.07 -2.38 -0.02 1.94 16 39 H 0.01 0.47 7.42 -2.38 -0.02 0.45 16 40 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 41 H 0.09 2.42 8.07 -2.39 -0.02 2.41 16 42 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 43 H 0.13 1.76 7.22 -2.38 -0.02 1.74 16 44 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 1.28 7.37 -2.38 -0.02 1.27 16 Total: -1.00 -74.33 390.66 7.59 -66.73 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.97 Total: 8.66 kcal Atomic # 6 Polarization: 14.34 SS G_CDS: 5.81 Total: 20.15 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -1.37 Total: -88.71 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: 0.15 Total: -51.99 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -74.33 7.59 -66.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776420972.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.800 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds