Wall clock time and date at job start Tue Mar 31 2020 15:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 110.43125 * 2 1 4 4 C 1.54263 * 110.48551 * 122.53677 * 2 1 3 5 5 C 1.53876 * 106.63651 * 142.26709 * 4 2 1 6 6 C 1.54367 * 106.54765 * 0.04097 * 5 4 2 7 7 H 1.09000 * 110.51365 * 95.04354 * 6 5 4 8 8 C 1.50703 * 110.46322 * 217.68762 * 6 5 4 9 9 O 1.20823 * 120.00196 * 114.76321 * 8 6 5 10 10 O 1.34230 * 119.99296 * 294.75787 * 8 6 5 11 11 C 1.45205 * 116.99327 * 179.97438 * 10 8 6 12 12 C 1.50702 * 109.46925 * 179.97438 * 11 10 8 13 13 O 1.21290 * 120.00061 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00237 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00126 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47443 * 90.00273 * 15 14 12 17 17 H 1.08005 * 119.99600 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00338 * 180.02562 * 16 15 14 19 19 N 1.31521 * 119.99852 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 120.00239 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47492 * 89.99745 * 20 18 16 22 22 H 1.48503 * 109.47226 * 210.00264 * 20 18 16 23 23 H 1.48509 * 109.46983 * 329.99734 * 20 18 16 24 24 C 1.46498 * 119.99825 * 0.02562 * 14 12 11 25 25 C 1.53002 * 109.46939 * 89.99854 * 24 14 12 26 26 C 1.47204 * 109.47084 * 180.02562 * 25 24 14 27 27 N 9.42409 * 109.08201 * 266.87308 * 5 1 2 28 28 C 1.54884 * 110.48991 * 237.31819 * 2 1 3 29 29 H 1.08994 * 109.47551 * 298.91114 * 1 2 3 30 30 H 1.09004 * 109.47167 * 58.91405 * 1 2 3 31 31 H 1.08997 * 109.47155 * 178.91159 * 1 2 3 32 32 H 1.09002 * 110.03499 * 261.57771 * 4 2 1 33 33 H 1.08995 * 110.03388 * 22.96226 * 4 2 1 34 34 H 1.09002 * 110.03233 * 119.31598 * 5 4 2 35 35 H 1.09003 * 110.02920 * 240.74130 * 5 4 2 36 36 H 1.08990 * 109.47573 * 300.00011 * 11 10 8 37 37 H 1.09001 * 109.46902 * 60.00978 * 11 10 8 38 38 H 1.09000 * 109.47168 * 210.00327 * 15 14 12 39 39 H 1.09003 * 109.47360 * 329.99830 * 15 14 12 40 40 H 0.96997 * 119.99653 * 179.97438 * 19 18 16 41 41 H 1.08995 * 109.47312 * 209.99552 * 24 14 12 42 42 H 1.09000 * 109.47260 * 329.99915 * 24 14 12 43 43 H 1.08993 * 109.47597 * 299.99875 * 25 24 14 44 44 H 1.08999 * 109.47300 * 60.00470 * 25 24 14 45 45 H 1.09007 * 110.75453 * 321.69362 * 28 2 1 46 46 H 1.08998 * 110.75749 * 84.87700 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0699 -0.7772 1.2183 5 6 3.3163 -1.5404 0.7369 6 6 3.4907 -1.1988 -0.7584 7 1 4.1898 -0.3717 -0.8822 8 6 3.9620 -2.4084 -1.5237 9 8 3.2502 -2.9076 -2.3627 10 8 5.1727 -2.9312 -1.2732 11 6 5.5605 -4.0965 -2.0478 12 6 6.9398 -4.5394 -1.6325 13 8 7.5370 -3.9330 -0.7684 14 7 7.5094 -5.6100 -2.2205 15 6 8.8501 -6.0409 -1.8164 16 6 8.7398 -7.0350 -0.6892 17 1 7.7682 -7.3173 -0.3113 18 6 9.8792 -7.5833 -0.1396 19 7 11.0623 -7.2392 -0.5994 20 14 9.7424 -8.8161 1.2571 21 1 9.6506 -10.1890 0.6986 22 1 10.9422 -8.7145 2.1263 23 1 8.5256 -8.5248 2.0571 24 6 6.7879 -6.3429 -3.2638 25 6 7.1155 -5.7388 -4.6308 26 6 6.3901 -6.4747 -5.6791 27 7 5.8331 -7.0400 -6.4904 28 6 2.0721 -0.7834 -1.2212 29 1 -0.3634 0.4968 0.8995 30 1 -0.3634 0.5306 -0.8801 31 1 -0.3633 -1.0274 -0.0195 32 1 2.3411 -0.0831 2.0138 33 1 1.3173 -1.4796 1.5765 34 1 4.1925 -1.2167 1.2988 35 1 3.1682 -2.6132 0.8607 36 1 4.8504 -4.9039 -1.8699 37 1 5.5646 -3.8432 -3.1079 38 1 9.3528 -6.5069 -2.6639 39 1 9.4247 -5.1765 -1.4836 40 1 11.8639 -7.6247 -0.2125 41 1 7.0902 -7.3900 -3.2476 42 1 5.7155 -6.2715 -3.0826 43 1 6.8133 -4.6917 -4.6472 44 1 8.1879 -5.8103 -4.8121 45 1 1.4581 -1.6618 -1.4202 46 1 2.1221 -0.1416 -2.1007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776420973.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:14 Heat of formation + Delta-G solvation = -130.382228 kcal Electronic energy + Delta-G solvation = -26958.388432 eV Core-core repulsion = 23039.932951 eV Total energy + Delta-G solvation = -3918.455480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 13.17 seconds Orbital eigenvalues (eV) -41.89570 -40.70266 -39.03508 -38.06855 -37.41637 -36.71909 -34.88839 -32.66331 -32.23405 -30.77053 -29.88421 -28.47195 -26.39950 -25.38185 -24.63713 -23.31689 -21.05826 -20.80754 -20.28379 -18.91292 -18.77417 -18.38596 -17.97638 -17.72722 -17.37528 -16.87533 -16.69708 -16.14731 -15.84597 -15.71302 -14.94428 -14.92812 -14.57345 -14.45459 -14.37423 -14.11293 -13.85811 -13.74593 -13.60902 -13.56484 -13.19714 -13.07466 -12.97433 -12.75159 -12.60528 -12.52038 -12.24565 -12.19923 -12.05984 -11.82204 -11.78228 -11.74210 -11.67683 -11.53963 -11.47331 -11.20296 -10.69950 -10.58146 -9.58593 -8.18664 -6.30465 1.09628 1.29029 1.40695 1.43117 1.52171 1.58111 1.79142 1.82391 2.31903 2.45380 3.03459 3.14072 3.40768 3.53210 3.55703 3.72358 3.89064 3.98250 4.07359 4.10736 4.16583 4.30899 4.36728 4.45179 4.51400 4.52046 4.68058 4.76541 4.78686 4.89076 5.00450 5.02060 5.03776 5.11178 5.15861 5.26720 5.29416 5.32873 5.36233 5.37922 5.56027 5.58921 5.83088 6.10915 6.52948 6.58684 6.67555 6.78422 7.24987 7.42036 8.88374 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.011049 B = 0.003086 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.507792 B = 9071.491740 C =10992.838296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.092 0.908 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.086 4.086 7 H 0.131 0.869 8 C 0.468 3.532 9 O -0.528 6.528 10 O -0.346 6.346 11 C 0.052 3.948 12 C 0.506 3.494 13 O -0.567 6.567 14 N -0.590 5.590 15 C 0.260 3.740 16 C -0.542 4.542 17 H 0.054 0.946 18 C 0.013 3.987 19 N -0.924 5.924 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.108 3.892 25 C -0.040 4.040 26 C 0.245 3.755 27 N -0.487 5.487 28 C -0.101 4.101 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.054 0.946 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.043 0.957 39 H 0.008 0.992 40 H 0.266 0.734 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.133 0.867 44 H 0.128 0.872 45 H 0.067 0.933 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.844 13.882 -1.609 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.110 0.890 4 C -0.155 4.155 5 C -0.153 4.153 6 C -0.105 4.105 7 H 0.149 0.851 8 C 0.312 3.688 9 O -0.417 6.417 10 O -0.262 6.262 11 C -0.025 4.025 12 C 0.294 3.706 13 O -0.446 6.446 14 N -0.322 5.322 15 C 0.139 3.861 16 C -0.581 4.581 17 H 0.072 0.928 18 C -0.187 4.187 19 N -0.564 5.564 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.017 4.017 25 C -0.081 4.081 26 C -0.072 4.072 27 N -0.165 5.165 28 C -0.139 4.139 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.145 0.855 38 H 0.061 0.939 39 H 0.027 0.973 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.086 0.914 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.347 13.133 -2.596 22.712 hybrid contribution 0.802 -0.923 0.888 1.511 sum -17.545 12.211 -1.708 21.444 Atomic orbital electron populations 1.21791 0.94070 1.01833 1.02404 1.21982 0.96290 0.99614 0.93189 0.89006 1.22238 0.95907 0.99067 0.98264 1.22137 1.00295 1.00627 0.92206 1.22150 0.99949 0.92706 0.95736 0.85127 1.24373 0.78141 0.85224 0.81034 1.90638 1.55695 1.61731 1.33676 1.86605 1.35557 1.43202 1.60831 1.22933 0.93861 0.88118 0.97592 1.20458 0.87545 0.80674 0.81964 1.90713 1.65233 1.56043 1.32592 1.47996 1.18822 1.27955 1.37384 1.18910 0.78268 0.93852 0.95025 1.21734 0.92761 1.24768 1.18844 0.92807 1.25697 0.94931 0.98698 0.99327 1.70016 0.98099 1.44749 1.43524 0.85564 0.77468 0.79453 0.79221 1.19279 1.20981 1.19928 1.21627 0.97871 0.97647 0.84525 1.19847 1.01358 0.99637 0.87215 1.29068 0.92275 0.92485 0.93417 1.81206 1.11717 1.11151 1.12454 1.22561 0.91961 1.00509 0.98867 0.91631 0.92095 0.93158 0.89989 0.91352 0.90020 0.92728 0.86871 0.85452 0.93931 0.97346 0.92508 0.88801 0.87970 0.84888 0.85431 0.91406 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.11 71.98 0.66 -0.82 16 2 C -0.09 -1.06 3.46 -9.72 -0.03 -1.09 16 3 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.12 -1.50 6.37 31.32 0.20 -1.30 16 5 C -0.11 -1.99 6.37 31.35 0.20 -1.79 16 6 C -0.09 -1.56 3.37 -10.43 -0.04 -1.60 16 7 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 8 C 0.47 11.68 7.11 71.24 0.51 12.19 16 9 O -0.53 -14.72 15.47 21.97 0.34 -14.38 16 10 O -0.35 -10.21 9.76 -45.06 -0.44 -10.65 16 11 C 0.05 1.39 4.50 71.24 0.32 1.71 16 12 C 0.51 18.65 7.75 87.66 0.68 19.33 16 13 O -0.57 -27.29 16.08 15.74 0.25 -27.04 16 14 N -0.59 -20.83 2.46 -826.15 -2.03 -22.86 16 15 C 0.26 12.23 5.16 85.63 0.44 12.67 16 16 C -0.54 -28.78 9.39 25.60 0.24 -28.54 16 17 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 18 C 0.01 0.70 5.46 84.65 0.46 1.16 16 19 N -0.92 -52.72 13.29 21.45 0.28 -52.44 16 20 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 C 0.11 2.59 5.17 86.38 0.45 3.04 16 25 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 26 C 0.24 5.43 15.43 89.46 1.38 6.81 16 27 N -0.49 -13.82 18.53 19.99 0.37 -13.45 16 28 C -0.10 -1.55 5.37 31.88 0.17 -1.38 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.57 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.07 0.88 7.84 -2.39 -0.02 0.86 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.11 7.83 -2.39 -0.02 1.09 16 36 H 0.11 2.68 7.39 -2.39 -0.02 2.66 16 37 H 0.13 2.56 7.18 -2.39 -0.02 2.55 16 38 H 0.04 1.96 8.07 -2.39 -0.02 1.94 16 39 H 0.01 0.46 7.42 -2.39 -0.02 0.45 16 40 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 41 H 0.09 2.42 8.07 -2.39 -0.02 2.40 16 42 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 43 H 0.13 1.75 7.22 -2.39 -0.02 1.74 16 44 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.07 1.27 7.38 -2.38 -0.02 1.25 16 46 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -74.47 390.71 7.59 -66.88 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.97 Total: 8.93 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: 5.81 Total: 19.86 kcal Atomic # 7 Polarization: -87.38 SS G_CDS: -1.37 Total: -88.75 kcal Atomic # 8 Polarization: -52.22 SS G_CDS: 0.15 Total: -52.07 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.47 7.59 -66.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776420973.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.502 kcal (2) G-P(sol) polarization free energy of solvation -74.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 13.18 seconds