Wall clock time and date at job start Tue Mar 31 2020 15:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 110.43362 * 2 1 4 4 C 1.54887 * 110.48341 * 122.54039 * 2 1 3 5 5 C 1.54891 * 102.74631 * 156.62451 * 4 2 1 6 6 C 1.54265 * 104.19427 * 322.05440 * 5 4 2 7 7 H 1.09001 * 110.03337 * 264.27775 * 6 5 4 8 8 C 1.50700 * 110.03380 * 142.89665 * 6 5 4 9 9 O 1.20823 * 120.00036 * 241.45422 * 8 6 5 10 10 O 1.34227 * 120.00267 * 61.44951 * 8 6 5 11 11 C 1.45201 * 117.00649 * 180.02562 * 10 8 6 12 12 C 1.50694 * 109.47356 * 180.02562 * 11 10 8 13 13 O 1.21287 * 120.00276 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99813 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99995 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.46888 * 89.99765 * 15 14 12 17 17 H 1.08002 * 120.00516 * 359.97438 * 16 15 14 18 18 C 1.37884 * 119.99783 * 179.97438 * 16 15 14 19 19 N 1.31514 * 119.99707 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99956 * 180.27458 * 18 16 15 21 21 H 1.48503 * 109.47407 * 269.72718 * 20 18 16 22 22 H 1.48505 * 109.47281 * 29.72474 * 20 18 16 23 23 H 1.48501 * 109.47274 * 149.72572 * 20 18 16 24 24 C 1.46497 * 120.00171 * 359.97438 * 14 12 11 25 25 C 1.53007 * 109.47145 * 270.00281 * 24 14 12 26 26 C 1.47194 * 109.47241 * 179.97438 * 25 24 14 27 27 N 9.81215 * 129.14463 * 58.92807 * 3 1 2 28 28 C 1.53880 * 106.59924 * 23.61315 * 6 5 4 29 29 H 1.09005 * 109.47432 * 298.91060 * 1 2 3 30 30 H 1.09000 * 109.47300 * 58.91480 * 1 2 3 31 31 H 1.09007 * 109.47135 * 178.91257 * 1 2 3 32 32 H 1.09002 * 110.75938 * 38.30809 * 4 2 1 33 33 H 1.09002 * 110.75944 * 274.93483 * 4 2 1 34 34 H 1.08999 * 110.48815 * 203.37662 * 5 4 2 35 35 H 1.08996 * 110.59897 * 80.78768 * 5 4 2 36 36 H 1.09003 * 109.46708 * 60.00075 * 11 10 8 37 37 H 1.09006 * 109.46597 * 300.00543 * 11 10 8 38 38 H 1.09001 * 109.46452 * 330.00023 * 15 14 12 39 39 H 1.08997 * 109.46855 * 209.99941 * 15 14 12 40 40 H 0.97005 * 119.99656 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.46973 * 29.99711 * 24 14 12 42 42 H 1.08999 * 109.47469 * 150.00354 * 24 14 12 43 43 H 1.09000 * 109.46585 * 300.00120 * 25 24 14 44 44 H 1.08999 * 109.46878 * 59.99710 * 25 24 14 45 45 H 1.08993 * 110.03054 * 119.28391 * 28 6 5 46 46 H 1.08998 * 110.02986 * 240.71707 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0720 -0.7805 1.2232 5 6 3.4907 -1.1969 0.7615 6 6 3.3166 -1.5414 -0.7320 7 1 3.1701 -2.6147 -0.8531 8 6 4.5280 -1.0952 -1.5094 9 8 4.4139 -0.2707 -2.3852 10 8 5.7339 -1.6136 -1.2288 11 6 6.8562 -1.1370 -2.0173 12 6 8.1173 -1.8262 -1.5640 13 8 8.0747 -2.6387 -0.6645 14 7 9.2928 -1.5389 -2.1574 15 6 10.5190 -2.2084 -1.7164 16 6 10.7145 -3.4734 -2.5118 17 1 9.9970 -3.7511 -3.2697 18 6 11.8096 -4.2762 -2.2719 19 7 12.6830 -3.9383 -1.3486 20 14 12.0560 -5.8402 -3.2631 21 1 11.3920 -6.9744 -2.5717 22 1 11.4634 -5.6688 -4.6140 23 1 13.5086 -6.1210 -3.3918 24 6 9.3445 -0.5571 -3.2435 25 6 9.1341 -1.2665 -4.5828 26 6 9.1853 -0.2799 -5.6740 27 7 9.2249 0.4781 -6.5180 28 6 2.0699 -0.7803 -1.2163 29 1 -0.3634 0.4968 0.8996 30 1 -0.3634 0.5306 -0.8801 31 1 -0.3634 -1.0275 -0.0195 32 1 1.4580 -1.6583 1.4244 33 1 2.1251 -0.1356 2.1003 34 1 3.8316 -2.0704 1.3173 35 1 4.1915 -0.3710 0.8834 36 1 6.9622 -0.0603 -1.8846 37 1 6.6802 -1.3578 -3.0702 38 1 10.4381 -2.4539 -0.6574 39 1 11.3706 -1.5461 -1.8718 40 1 13.4532 -4.5033 -1.1796 41 1 8.5603 0.1861 -3.0990 42 1 10.3168 -0.0644 -3.2421 43 1 9.9182 -2.0097 -4.7272 44 1 8.1618 -1.7591 -4.5841 45 1 2.3412 -0.0883 -2.0134 46 1 1.3176 -1.4842 -1.5722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776420974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:56 Heat of formation + Delta-G solvation = -128.595061 kcal Electronic energy + Delta-G solvation = -27084.308194 eV Core-core repulsion = 23165.930211 eV Total energy + Delta-G solvation = -3918.377983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 15.26 seconds Orbital eigenvalues (eV) -41.93037 -40.71848 -39.00991 -38.05503 -37.40963 -36.71761 -34.81732 -32.66358 -32.18553 -30.77588 -29.86257 -28.51653 -26.36468 -25.23744 -24.68243 -23.26231 -21.37426 -20.52430 -20.20357 -19.07026 -19.01825 -18.11487 -17.93332 -17.67344 -17.54786 -16.90663 -16.22679 -16.18338 -15.74338 -15.69697 -15.37969 -14.89809 -14.55334 -14.47350 -14.32427 -13.96929 -13.81516 -13.71161 -13.62759 -13.58903 -13.19550 -12.92181 -12.83061 -12.75780 -12.68020 -12.54151 -12.28772 -12.19447 -11.97053 -11.79810 -11.73695 -11.70823 -11.57893 -11.52634 -11.42293 -11.26066 -10.69319 -10.55429 -9.59232 -8.14831 -6.26341 1.10483 1.28768 1.44887 1.47406 1.54983 1.58647 1.81669 1.82726 2.31921 2.47885 3.04902 3.18178 3.44018 3.54945 3.56074 3.71608 3.89878 4.00290 4.07996 4.13500 4.14805 4.33966 4.40971 4.49143 4.50571 4.55727 4.69717 4.74482 4.80841 4.98004 5.01546 5.03803 5.09398 5.10950 5.15844 5.24600 5.29567 5.34176 5.38763 5.44117 5.57447 5.59839 5.85105 6.12633 6.53254 6.58785 6.67726 6.83137 7.25978 7.45505 8.92919 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.002912 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.715298 B = 9614.427940 C =10898.010853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.067 0.933 4 C -0.113 4.113 5 C -0.114 4.114 6 C -0.085 4.085 7 H 0.127 0.873 8 C 0.466 3.534 9 O -0.528 6.528 10 O -0.345 6.345 11 C 0.051 3.949 12 C 0.507 3.493 13 O -0.567 6.567 14 N -0.590 5.590 15 C 0.259 3.741 16 C -0.532 4.532 17 H 0.070 0.930 18 C 0.010 3.990 19 N -0.929 5.929 20 Si 0.956 3.044 21 H -0.285 1.285 22 H -0.256 1.256 23 H -0.286 1.286 24 C 0.113 3.887 25 C -0.044 4.044 26 C 0.246 3.754 27 N -0.487 5.487 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.003 0.997 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.109 0.891 42 H 0.099 0.901 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.593 7.240 1.317 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.085 0.915 4 C -0.151 4.151 5 C -0.152 4.152 6 C -0.104 4.104 7 H 0.145 0.855 8 C 0.311 3.689 9 O -0.418 6.418 10 O -0.261 6.261 11 C -0.025 4.025 12 C 0.294 3.706 13 O -0.445 6.445 14 N -0.322 5.322 15 C 0.138 3.862 16 C -0.571 4.571 17 H 0.088 0.912 18 C -0.189 4.189 19 N -0.569 5.569 20 Si 0.782 3.218 21 H -0.212 1.212 22 H -0.179 1.179 23 H -0.211 1.211 24 C -0.012 4.012 25 C -0.086 4.086 26 C -0.071 4.071 27 N -0.165 5.165 28 C -0.152 4.152 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.021 0.979 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.127 0.873 42 H 0.117 0.883 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.090 0.910 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.368 8.148 0.335 22.871 hybrid contribution 1.023 -1.177 -0.162 1.568 sum -20.345 6.971 0.173 21.507 Atomic orbital electron populations 1.21777 0.93510 1.02481 1.02055 1.21984 0.96649 0.98892 0.94097 0.91467 1.22599 0.94182 1.00652 0.97628 1.22348 0.98909 1.02194 0.91766 1.21912 0.88741 1.03899 0.95880 0.85537 1.24403 0.84691 0.78158 0.81658 1.90618 1.86159 1.32678 1.32295 1.86596 1.16649 1.63713 1.59110 1.22944 0.82415 1.00336 0.96850 1.20440 0.85027 0.82504 0.82590 1.90715 1.86240 1.35688 1.31887 1.48022 1.07581 1.41763 1.34865 1.18933 0.80631 0.92017 0.94591 1.21766 1.07870 1.07320 1.20150 0.91192 1.25741 0.95836 1.01007 0.96304 1.70043 1.13482 1.39736 1.33658 0.85581 0.77068 0.79568 0.79616 1.21164 1.17939 1.21134 1.21648 1.05806 0.90065 0.83650 1.19897 1.07530 0.93965 0.87164 1.29099 0.91333 0.93098 0.93570 1.81198 1.11016 1.11983 1.12308 1.22349 0.94399 0.99507 0.98954 0.91938 0.92669 0.91746 0.89593 0.90362 0.89835 0.92242 0.86149 0.86112 0.97911 0.94677 0.92728 0.87335 0.88314 0.86031 0.85656 0.90993 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.12 71.98 0.66 -0.72 16 2 C -0.10 -1.26 3.46 -9.72 -0.03 -1.30 16 3 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.36 6.33 31.88 0.20 -1.16 16 5 C -0.11 -1.90 6.33 31.67 0.20 -1.70 16 6 C -0.09 -1.53 3.41 -10.81 -0.04 -1.57 16 7 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 8 C 0.47 11.56 7.11 71.24 0.51 12.07 16 9 O -0.53 -14.62 14.96 21.97 0.33 -14.29 16 10 O -0.35 -10.07 9.72 -45.03 -0.44 -10.51 16 11 C 0.05 1.36 4.50 71.23 0.32 1.68 16 12 C 0.51 18.49 7.75 87.66 0.68 19.17 16 13 O -0.57 -27.07 16.08 15.74 0.25 -26.82 16 14 N -0.59 -20.66 2.46 -826.14 -2.03 -22.69 16 15 C 0.26 12.11 5.20 85.63 0.45 12.56 16 16 C -0.53 -26.73 8.92 25.60 0.23 -26.51 16 17 H 0.07 3.31 7.42 -2.91 -0.02 3.29 16 18 C 0.01 0.54 5.46 84.66 0.46 1.00 16 19 N -0.93 -52.80 13.29 21.45 0.28 -52.51 16 20 Si 0.96 41.77 29.54 68.60 2.03 43.79 16 21 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 23 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 24 C 0.11 2.67 5.21 86.38 0.45 3.12 16 25 C -0.04 -0.98 6.03 28.79 0.17 -0.80 16 26 C 0.25 6.01 15.43 89.45 1.38 7.39 16 27 N -0.49 -14.48 18.53 19.99 0.37 -14.11 16 28 C -0.11 -1.77 5.97 31.32 0.19 -1.58 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.54 8.11 -2.38 -0.02 0.52 16 32 H 0.09 0.83 8.06 -2.39 -0.02 0.81 16 33 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.06 1.13 7.85 -2.39 -0.02 1.11 16 36 H 0.12 2.60 7.39 -2.39 -0.02 2.58 16 37 H 0.12 2.61 7.18 -2.38 -0.02 2.59 16 38 H 0.00 0.15 7.42 -2.39 -0.02 0.14 16 39 H 0.04 1.66 7.89 -2.39 -0.02 1.64 16 40 H 0.26 14.30 8.31 -92.70 -0.77 13.53 16 41 H 0.11 1.87 6.44 -2.39 -0.02 1.85 16 42 H 0.10 2.28 7.89 -2.39 -0.02 2.26 16 43 H 0.12 3.10 7.26 -2.39 -0.02 3.08 16 44 H 0.13 2.27 7.22 -2.39 -0.02 2.25 16 45 H 0.07 1.40 6.40 -2.39 -0.02 1.39 16 46 H 0.09 1.10 7.81 -2.39 -0.02 1.08 16 Total: -1.00 -72.11 387.63 7.60 -64.51 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.98 Total: 10.96 kcal Atomic # 6 Polarization: 15.84 SS G_CDS: 5.82 Total: 21.66 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -1.37 Total: -89.31 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: 0.14 Total: -51.61 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -72.11 7.60 -64.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776420974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.082 kcal (2) G-P(sol) polarization free energy of solvation -72.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.26 seconds