Wall clock time and date at job start Tue Mar 31 2020 15:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00242 * 2 1 4 4 C 1.38565 * 120.06700 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99953 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92893 * 179.97438 * 5 4 3 7 7 N 1.46505 * 109.47079 * 89.99900 * 6 5 4 8 8 C 1.34775 * 120.00296 * 179.72025 * 7 6 5 9 9 O 1.21586 * 119.99599 * 0.28309 * 8 7 6 10 10 N 1.34776 * 120.00218 * 180.27516 * 8 7 6 11 11 C 1.46500 * 120.00070 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47305 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99664 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00001 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99769 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47375 * 89.99765 * 16 14 12 18 18 H 1.48497 * 109.47046 * 209.99700 * 16 14 12 19 19 H 1.48497 * 109.47203 * 329.99653 * 16 14 12 20 20 C 1.38257 * 120.14334 * 0.27229 * 5 4 3 21 21 C 1.38242 * 120.14262 * 359.45135 * 20 5 4 22 22 C 1.38559 * 120.00354 * 0.55080 * 21 20 5 23 23 O 1.35995 * 120.07475 * 179.70586 * 22 21 20 24 24 C 1.42902 * 117.00299 * 5.48644 * 23 22 21 25 25 C 1.52998 * 109.47189 * 154.99240 * 24 23 22 26 26 C 1.52999 * 109.46866 * 274.99314 * 24 23 22 27 27 H 1.09002 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47254 * 300.00004 * 1 2 3 29 29 H 1.08997 * 109.47115 * 60.00287 * 1 2 3 30 30 H 1.07999 * 120.00857 * 359.97438 * 4 3 2 31 31 H 1.08994 * 109.47371 * 330.00522 * 6 5 4 32 32 H 1.08999 * 109.47132 * 209.99231 * 6 5 4 33 33 H 0.97009 * 119.99967 * 0.02562 * 7 6 5 34 34 H 0.96998 * 120.00042 * 359.97438 * 10 8 7 35 35 H 1.09009 * 109.46778 * 300.00132 * 11 10 8 36 36 H 1.08999 * 109.47364 * 59.99582 * 11 10 8 37 37 H 0.97007 * 120.00095 * 180.02562 * 15 14 12 38 38 H 1.07997 * 119.92886 * 179.70994 * 20 5 4 39 39 H 1.08003 * 119.99705 * 180.25616 * 21 20 5 40 40 H 1.08997 * 109.46597 * 34.99070 * 24 23 22 41 41 H 1.08990 * 109.47390 * 60.00005 * 25 24 23 42 42 H 1.08997 * 109.47026 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.47106 * 299.99990 * 25 24 23 44 44 H 1.09000 * 109.47116 * 60.00193 * 26 24 23 45 45 H 1.09006 * 109.46615 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47314 * 299.99318 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9223 3.6058 0.0000 6 6 1.1015 4.8696 -0.0012 7 7 0.8339 5.2794 1.3797 8 6 0.1167 6.3937 1.6251 9 8 -0.3126 7.0562 0.7003 10 7 -0.1248 6.7737 2.8954 11 6 -0.9049 7.9848 3.1620 12 6 -1.0290 8.1848 4.6505 13 1 -0.5727 7.4800 5.3299 14 6 -1.7258 9.2669 5.1449 15 7 -2.2817 10.1247 4.3175 16 14 -1.8802 9.5145 6.9900 17 1 -0.7447 10.3391 7.4756 18 1 -3.1590 10.2066 7.2912 19 1 -1.8597 8.1945 7.6700 20 6 3.3029 3.6799 -0.0046 21 6 4.0602 2.5234 0.0017 22 6 3.4359 1.2864 0.0011 23 8 4.1795 0.1477 0.0012 24 6 5.5954 0.2975 0.1237 25 6 6.1938 -0.9793 0.7174 26 6 6.2027 0.5510 -1.2575 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2146 2.3197 -0.0014 31 1 0.1578 4.6895 -0.5160 32 1 1.6506 5.6590 -0.5144 33 1 1.1767 4.7510 2.1176 34 1 0.2173 6.2450 3.6331 35 1 -0.4019 8.8454 2.7208 36 1 -1.8980 7.8809 2.7249 37 1 -2.7716 10.8863 4.6654 38 1 3.7907 4.6434 -0.0089 39 1 5.1385 2.5841 0.0022 40 1 5.8162 1.1407 0.7781 41 1 5.9729 -1.8225 0.0631 42 1 7.2737 -0.8649 0.8113 43 1 5.7610 -1.1600 1.7014 44 1 5.7764 1.4607 -1.6804 45 1 7.2827 0.6657 -1.1639 46 1 5.9819 -0.2922 -1.9119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:47 Heat of formation + Delta-G solvation = -87.792469 kcal Electronic energy + Delta-G solvation = -26390.325457 eV Core-core repulsion = 22473.716808 eV Total energy + Delta-G solvation = -3916.608650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94437 -39.24266 -38.95270 -37.51284 -34.58862 -33.95979 -33.38047 -32.27980 -30.75445 -30.20112 -27.85405 -27.73364 -27.05262 -25.34185 -23.37700 -22.52985 -21.79122 -20.91158 -20.14295 -18.87469 -18.13135 -17.31223 -16.85481 -16.18658 -16.06969 -15.63587 -15.51889 -15.12545 -14.95583 -14.80504 -14.62001 -14.28588 -13.84324 -13.68801 -13.40114 -13.18114 -13.01351 -12.88310 -12.67203 -12.45178 -12.25718 -12.10489 -11.93832 -11.80998 -11.59266 -11.33495 -11.27751 -11.08373 -10.99933 -10.93654 -10.86504 -10.28430 -9.43862 -9.34812 -8.94465 -8.75944 -8.65116 -8.01803 -7.72727 -6.13446 -4.19811 0.99207 1.15198 2.86156 3.03740 3.24835 3.26009 3.32327 3.34999 3.74518 3.98302 4.35108 4.35208 4.46577 4.50109 4.55754 4.68656 4.75647 4.87184 4.96391 5.04287 5.10910 5.12543 5.18788 5.22563 5.25362 5.29856 5.30717 5.36105 5.43949 5.61708 5.68177 5.74577 5.82485 5.92133 6.02003 6.38814 6.43386 6.83251 6.86971 7.15368 7.34624 7.54544 7.58214 7.59851 7.93732 8.07242 8.79096 8.97460 9.36060 9.50733 10.96778 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.002125 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.773511 B =13175.034314 C =13392.752000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.095 3.905 4 C -0.152 4.152 5 C -0.099 4.099 6 C 0.186 3.814 7 N -0.754 5.754 8 C 0.693 3.307 9 O -0.602 6.602 10 N -0.730 5.730 11 C 0.267 3.733 12 C -0.541 4.541 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.885 5.885 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 C -0.095 4.095 21 C -0.178 4.178 22 C 0.107 3.893 23 O -0.300 6.300 24 C 0.075 3.925 25 C -0.148 4.148 26 C -0.181 4.181 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.138 0.862 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.392 0.608 34 H 0.386 0.614 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.762 -23.442 -9.495 29.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.221 6.221 3 C 0.049 3.951 4 C -0.171 4.171 5 C -0.099 4.099 6 C 0.061 3.939 7 N -0.412 5.412 8 C 0.392 3.608 9 O -0.481 6.481 10 N -0.382 5.382 11 C 0.146 3.854 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.114 4.114 21 C -0.196 4.196 22 C 0.062 3.938 23 O -0.214 6.214 24 C 0.019 3.981 25 C -0.205 4.205 26 C -0.238 4.238 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.155 0.845 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.225 0.775 34 H 0.218 0.782 35 H 0.042 0.958 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.225 -22.993 -10.371 29.463 hybrid contribution 0.105 0.050 1.644 1.648 sum 15.330 -22.943 -8.727 28.940 Atomic orbital electron populations 1.23088 0.78409 1.03969 1.01541 1.86158 1.21100 1.25766 1.89112 1.18216 0.89094 0.85231 1.02547 1.21044 1.00218 0.90802 1.05048 1.19673 0.93801 0.94113 1.02357 1.19843 0.98270 0.92078 0.83685 1.45212 1.59949 1.28421 1.07596 1.16155 0.79374 0.80673 0.84560 1.90872 1.57517 1.56022 1.43680 1.45718 1.57856 1.30468 1.04124 1.18976 0.90411 0.80279 0.95755 1.21230 1.35267 1.10368 0.91098 0.91970 1.24947 0.95079 0.95516 0.98542 1.69979 1.34246 1.13509 1.34548 0.86413 0.77600 0.78337 0.84521 1.20491 1.21031 1.19803 1.20853 0.92889 0.98167 0.99474 1.21100 1.00465 0.90985 1.07088 1.18231 0.88141 0.86187 1.01283 1.86222 1.18693 1.28478 1.88053 1.22454 0.78719 0.99747 0.97221 1.21840 1.00453 0.96529 1.01688 1.22396 1.01280 1.03128 0.97020 0.88238 0.92485 0.92598 0.84453 0.91215 0.90967 0.77490 0.78174 0.95751 0.95758 0.92485 0.85164 0.84539 0.90868 0.91454 0.90552 0.91597 0.91731 0.91013 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.53 10.28 -34.23 -0.35 -3.89 16 3 C 0.09 1.10 6.70 -39.12 -0.26 0.84 16 4 C -0.15 -1.65 8.69 -39.46 -0.34 -1.99 16 5 C -0.10 -1.09 5.25 -104.61 -0.55 -1.64 16 6 C 0.19 2.47 5.80 -5.19 -0.03 2.44 16 7 N -0.75 -11.49 5.55 -66.42 -0.37 -11.86 16 8 C 0.69 14.48 8.57 -86.92 -0.74 13.74 16 9 O -0.60 -15.20 16.34 5.29 0.09 -15.11 16 10 N -0.73 -15.85 5.55 -66.41 -0.37 -16.22 16 11 C 0.27 7.23 5.43 -5.19 -0.03 7.20 16 12 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 13 H 0.06 1.60 7.60 -52.48 -0.40 1.20 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 16 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.09 -0.96 9.69 -39.57 -0.38 -1.34 16 21 C -0.18 -1.70 8.25 -39.46 -0.33 -2.02 16 22 C 0.11 1.20 6.61 -39.12 -0.26 0.94 16 23 O -0.30 -3.27 9.59 -34.22 -0.33 -3.60 16 24 C 0.07 0.55 2.85 -26.73 -0.08 0.48 16 25 C -0.15 -0.87 9.56 37.16 0.36 -0.51 16 26 C -0.18 -1.11 9.17 37.16 0.34 -0.77 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.14 1.33 6.30 -52.49 -0.33 1.00 16 31 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 32 H 0.07 0.99 8.08 -51.93 -0.42 0.58 16 33 H 0.39 5.02 8.48 -40.82 -0.35 4.68 16 34 H 0.39 7.20 8.34 -40.82 -0.34 6.86 16 35 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 36 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.14 1.01 5.43 -52.48 -0.28 0.72 16 40 H 0.07 0.48 6.31 -51.93 -0.33 0.16 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.43 6.92 -51.93 -0.36 0.07 16 45 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 384.93 15.07 5.80 5.80 Total: -1.00 -34.75 384.93 -8.51 -43.26 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.96 Total: 6.19 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: -1.73 Total: 5.02 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: 0.00 Total: -53.65 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.59 Total: -22.60 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.75 -8.51 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.532 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds