Wall clock time and date at job start Tue Mar 31 2020 15:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35997 * 117.00242 * 2 1 4 4 C 1.38565 * 120.06700 * 359.97438 * 3 2 1 5 5 C 1.38247 * 119.99953 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.92893 * 179.97438 * 5 4 3 7 7 N 1.46505 * 109.47079 * 89.99900 * 6 5 4 8 8 C 1.34775 * 120.00296 * 179.72025 * 7 6 5 9 9 O 1.21586 * 119.99599 * 0.28309 * 8 7 6 10 10 N 1.34776 * 120.00218 * 180.27516 * 8 7 6 11 11 C 1.46500 * 120.00070 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47305 * 180.02562 * 11 10 8 13 13 H 1.08003 * 119.99664 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99950 * 180.02562 * 12 11 10 15 15 N 1.31508 * 120.00001 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99769 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47375 * 89.99765 * 16 14 12 18 18 H 1.48497 * 109.47046 * 209.99700 * 16 14 12 19 19 H 1.48497 * 109.47203 * 329.99653 * 16 14 12 20 20 C 1.38257 * 120.14334 * 0.27229 * 5 4 3 21 21 C 1.38242 * 120.14262 * 359.45135 * 20 5 4 22 22 C 1.38559 * 120.00354 * 0.55080 * 21 20 5 23 23 O 1.35995 * 120.07475 * 179.70586 * 22 21 20 24 24 C 1.42902 * 117.00299 * 5.48644 * 23 22 21 25 25 C 1.52998 * 109.47189 * 154.99240 * 24 23 22 26 26 C 1.52999 * 109.46866 * 274.99314 * 24 23 22 27 27 H 1.09002 * 109.47020 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47254 * 300.00004 * 1 2 3 29 29 H 1.08997 * 109.47115 * 60.00287 * 1 2 3 30 30 H 1.07999 * 120.00857 * 359.97438 * 4 3 2 31 31 H 1.08994 * 109.47371 * 330.00522 * 6 5 4 32 32 H 1.08999 * 109.47132 * 209.99231 * 6 5 4 33 33 H 0.97009 * 119.99967 * 0.02562 * 7 6 5 34 34 H 0.96998 * 120.00042 * 359.97438 * 10 8 7 35 35 H 1.09009 * 109.46778 * 300.00132 * 11 10 8 36 36 H 1.08999 * 109.47364 * 59.99582 * 11 10 8 37 37 H 0.97007 * 120.00095 * 180.02562 * 15 14 12 38 38 H 1.07997 * 119.92886 * 179.70994 * 20 5 4 39 39 H 1.08003 * 119.99705 * 180.25616 * 21 20 5 40 40 H 1.08997 * 109.46597 * 34.99070 * 24 23 22 41 41 H 1.08990 * 109.47390 * 60.00005 * 25 24 23 42 42 H 1.08997 * 109.47026 * 180.02562 * 25 24 23 43 43 H 1.09004 * 109.47106 * 299.99990 * 25 24 23 44 44 H 1.09000 * 109.47116 * 60.00193 * 26 24 23 45 45 H 1.09006 * 109.46615 * 179.97438 * 26 24 23 46 46 H 1.08997 * 109.47314 * 299.99318 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9223 3.6058 0.0000 6 6 1.1015 4.8696 -0.0012 7 7 0.8339 5.2794 1.3797 8 6 0.1167 6.3937 1.6251 9 8 -0.3126 7.0562 0.7003 10 7 -0.1248 6.7737 2.8954 11 6 -0.9049 7.9848 3.1620 12 6 -1.0290 8.1848 4.6505 13 1 -0.5727 7.4800 5.3299 14 6 -1.7258 9.2669 5.1449 15 7 -2.2817 10.1247 4.3175 16 14 -1.8802 9.5145 6.9900 17 1 -0.7447 10.3391 7.4756 18 1 -3.1590 10.2066 7.2912 19 1 -1.8597 8.1945 7.6700 20 6 3.3029 3.6799 -0.0046 21 6 4.0602 2.5234 0.0017 22 6 3.4359 1.2864 0.0011 23 8 4.1795 0.1477 0.0012 24 6 5.5954 0.2975 0.1237 25 6 6.1938 -0.9793 0.7174 26 6 6.2027 0.5510 -1.2575 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.2146 2.3197 -0.0014 31 1 0.1578 4.6895 -0.5160 32 1 1.6506 5.6590 -0.5144 33 1 1.1767 4.7510 2.1176 34 1 0.2173 6.2450 3.6331 35 1 -0.4019 8.8454 2.7208 36 1 -1.8980 7.8809 2.7249 37 1 -2.7716 10.8863 4.6654 38 1 3.7907 4.6434 -0.0089 39 1 5.1385 2.5841 0.0022 40 1 5.8162 1.1407 0.7781 41 1 5.9729 -1.8225 0.0631 42 1 7.2737 -0.8649 0.8113 43 1 5.7610 -1.1600 1.7014 44 1 5.7764 1.4607 -1.6804 45 1 7.2827 0.6657 -1.1639 46 1 5.9819 -0.2922 -1.9119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787357775.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:46 Heat of formation + Delta-G solvation = -112.119605 kcal Electronic energy + Delta-G solvation = -26391.380361 eV Core-core repulsion = 22473.716808 eV Total energy + Delta-G solvation = -3917.663554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73832 -40.82147 -39.73306 -38.43529 -36.22848 -35.54907 -34.35408 -34.01982 -31.72858 -31.07423 -29.28745 -28.35443 -28.12418 -26.50543 -24.53883 -24.00969 -22.69972 -21.85789 -21.60718 -19.92854 -19.51337 -18.31042 -17.88565 -17.64011 -17.30599 -16.89857 -16.45553 -16.43449 -16.16157 -15.81609 -15.60350 -15.49499 -14.97358 -14.78746 -14.66427 -14.31736 -14.09826 -14.00837 -13.66270 -13.52352 -13.16718 -13.11087 -12.93740 -12.86722 -12.77696 -12.69440 -12.43264 -12.21210 -12.07562 -12.01903 -11.75843 -11.59095 -11.45902 -11.24027 -10.79031 -10.27237 -9.75136 -9.56987 -8.83867 -8.26860 -6.43062 0.15540 0.33114 1.44393 1.47090 1.58059 1.94411 2.20838 2.26346 2.33593 2.40481 2.70814 3.07966 3.57628 3.63001 3.76096 3.84111 3.97217 4.04241 4.15696 4.18217 4.31299 4.32810 4.38190 4.54402 4.63857 4.71084 4.72835 4.74409 4.83207 4.87422 4.90978 5.05046 5.10940 5.19452 5.26367 5.29576 5.31009 5.49029 5.51313 5.54040 5.63853 5.69849 5.87032 6.12641 6.27385 6.60612 6.68689 7.25981 7.32281 7.73749 8.85370 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.017913 B = 0.002125 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.773511 B =13175.034314 C =13392.752000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.327 6.327 3 C 0.078 3.922 4 C -0.151 4.151 5 C -0.104 4.104 6 C 0.188 3.812 7 N -0.728 5.728 8 C 0.692 3.308 9 O -0.648 6.648 10 N -0.724 5.724 11 C 0.285 3.715 12 C -0.554 4.554 13 H 0.083 0.917 14 C 0.003 3.997 15 N -0.930 5.930 16 Si 0.986 3.014 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.256 1.256 20 C -0.092 4.092 21 C -0.172 4.172 22 C 0.099 3.901 23 O -0.320 6.320 24 C 0.065 3.935 25 C -0.146 4.146 26 C -0.177 4.177 27 H 0.118 0.882 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.144 0.856 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.408 0.592 34 H 0.404 0.596 35 H -0.014 1.014 36 H -0.014 1.014 37 H 0.269 0.731 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.093 0.907 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.519 -24.850 -8.007 31.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.242 6.242 3 C 0.032 3.968 4 C -0.170 4.170 5 C -0.105 4.105 6 C 0.064 3.936 7 N -0.386 5.386 8 C 0.392 3.608 9 O -0.531 6.531 10 N -0.377 5.377 11 C 0.162 3.838 12 C -0.592 4.592 13 H 0.101 0.899 14 C -0.197 4.197 15 N -0.569 5.569 16 Si 0.809 3.191 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.180 1.180 20 C -0.111 4.111 21 C -0.190 4.190 22 C 0.053 3.947 23 O -0.235 6.235 24 C 0.010 3.990 25 C -0.203 4.203 26 C -0.235 4.235 27 H 0.136 0.864 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.162 0.838 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.244 0.756 34 H 0.239 0.761 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.077 0.923 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.112 0.888 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 17.036 -24.487 -8.876 31.123 hybrid contribution -0.382 0.382 1.081 1.209 sum 16.654 -24.105 -7.795 30.318 Atomic orbital electron populations 1.23308 0.76850 1.05430 1.02004 1.86130 1.22840 1.25966 1.89234 1.18429 0.89653 0.85450 1.03248 1.21087 1.00632 0.90557 1.04710 1.19426 0.94034 0.92930 1.04110 1.19898 0.98463 0.93115 0.82095 1.44997 1.57912 1.26355 1.09296 1.16288 0.79452 0.81529 0.83524 1.90842 1.59415 1.57900 1.44930 1.45310 1.57669 1.29414 1.05339 1.18411 0.88620 0.81034 0.95733 1.21597 1.35420 1.10998 0.91195 0.89904 1.26063 0.94344 0.94986 1.04274 1.70142 1.35123 1.14268 1.37324 0.85143 0.77579 0.78926 0.77460 1.19586 1.20962 1.18020 1.21024 0.92446 0.99028 0.98587 1.21301 1.01567 0.90091 1.06079 1.18499 0.88322 0.86886 1.00965 1.86211 1.20481 1.28783 1.87982 1.22763 0.77168 1.00864 0.98239 1.21872 1.01763 0.95696 1.00996 1.22379 1.02548 1.02499 0.96045 0.86389 0.92148 0.91950 0.83788 0.91779 0.91221 0.75589 0.76070 0.99580 0.99610 0.92255 0.83834 0.82284 0.89908 0.91946 0.88205 0.92275 0.92285 0.88809 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.33 -7.36 10.28 -79.65 -0.82 -8.18 16 3 C 0.08 1.74 6.70 22.57 0.15 1.89 16 4 C -0.15 -3.13 8.69 22.35 0.19 -2.93 16 5 C -0.10 -2.18 5.25 -19.86 -0.10 -2.28 16 6 C 0.19 4.87 5.80 85.63 0.50 5.37 16 7 N -0.73 -21.53 5.55 -482.30 -2.68 -24.21 16 8 C 0.69 29.14 8.57 179.06 1.53 30.67 16 9 O -0.65 -33.70 16.34 -3.99 -0.07 -33.77 16 10 N -0.72 -31.59 5.55 -482.29 -2.68 -34.27 16 11 C 0.29 15.97 5.43 85.63 0.46 16.43 16 12 C -0.55 -30.41 9.28 25.60 0.24 -30.17 16 13 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 14 C 0.00 0.16 5.46 84.66 0.46 0.62 16 15 N -0.93 -56.39 13.29 21.45 0.28 -56.10 16 16 Si 0.99 42.47 29.54 68.60 2.03 44.50 16 17 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 18 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 19 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 20 C -0.09 -1.68 9.69 22.28 0.22 -1.46 16 21 C -0.17 -2.94 8.25 22.35 0.18 -2.76 16 22 C 0.10 2.10 6.61 22.57 0.15 2.25 16 23 O -0.32 -6.66 9.59 -79.63 -0.76 -7.43 16 24 C 0.07 0.85 2.85 30.59 0.09 0.93 16 25 C -0.15 -1.47 9.56 71.98 0.69 -0.79 16 26 C -0.18 -1.84 9.17 71.98 0.66 -1.18 16 27 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 29 H 0.06 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.14 2.68 6.30 -2.91 -0.02 2.66 16 31 H 0.06 1.76 8.08 -2.39 -0.02 1.74 16 32 H 0.07 1.88 8.08 -2.39 -0.02 1.86 16 33 H 0.41 9.69 8.48 -92.70 -0.79 8.91 16 34 H 0.40 14.58 8.34 -92.71 -0.77 13.81 16 35 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 36 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 37 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 38 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.16 1.91 5.43 -2.91 -0.02 1.89 16 40 H 0.08 0.90 6.31 -2.39 -0.02 0.88 16 41 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 44 H 0.06 0.68 6.92 -2.39 -0.02 0.66 16 45 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 46 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -77.10 384.93 1.29 -75.80 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: -0.55 Total: 25.66 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: 6.53 Total: 17.99 kcal Atomic # 7 Polarization: -109.51 SS G_CDS: -5.07 Total: -114.58 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: -1.65 Total: -49.38 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -77.10 1.29 -75.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357775.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.315 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds