Wall clock time and date at job start Tue Mar 31 2020 15:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47319 * 2 1 4 4 O 1.42898 * 109.47202 * 119.99963 * 2 1 3 5 5 C 1.35899 * 117.00024 * 84.69506 * 4 2 1 6 6 C 1.38759 * 120.05237 * 174.64231 * 5 4 2 7 7 C 1.38123 * 119.93835 * 180.02562 * 6 5 4 8 8 C 1.38286 * 120.06082 * 0.02562 * 7 6 5 9 9 C 1.38243 * 120.11119 * 359.95281 * 8 7 6 10 10 C 1.50700 * 119.97673 * 180.02562 * 9 8 7 11 11 H 1.09001 * 109.47611 * 205.00480 * 10 9 8 12 12 O 1.42901 * 109.46921 * 325.00222 * 10 9 8 13 13 C 1.52993 * 109.47206 * 84.99949 * 10 9 8 14 14 N 1.46499 * 109.47265 * 179.97438 * 13 10 9 15 15 C 1.34785 * 119.99906 * 179.97438 * 14 13 10 16 16 O 1.21583 * 119.99905 * 359.73066 * 15 14 13 17 17 N 1.34772 * 119.99678 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00031 * 180.02562 * 17 15 14 19 19 C 1.50701 * 109.47407 * 179.97438 * 18 17 15 20 20 H 1.07993 * 119.99881 * 0.02562 * 19 18 17 21 21 C 1.37879 * 119.99834 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00392 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99533 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47458 * 90.00182 * 23 21 19 25 25 H 1.48500 * 109.47020 * 209.99666 * 23 21 19 26 26 H 1.48494 * 109.47523 * 329.99667 * 23 21 19 27 27 C 1.38174 * 120.05177 * 0.28209 * 9 8 7 28 28 H 1.09005 * 109.46850 * 60.00488 * 1 2 3 29 29 H 1.08997 * 109.46892 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47363 * 300.00081 * 1 2 3 31 31 H 1.09004 * 109.47345 * 240.00063 * 2 1 3 32 32 H 1.09000 * 109.47338 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46934 * 299.99995 * 3 2 1 34 34 H 1.09004 * 109.46861 * 59.99767 * 3 2 1 35 35 H 1.07994 * 120.02877 * 359.97438 * 6 5 4 36 36 H 1.08006 * 119.96967 * 179.97438 * 7 6 5 37 37 H 1.07997 * 119.94923 * 179.97438 * 8 7 6 38 38 H 0.96704 * 113.99510 * 59.99735 * 12 10 9 39 39 H 1.09005 * 109.47055 * 60.00281 * 13 10 9 40 40 H 1.09001 * 109.47269 * 300.00740 * 13 10 9 41 41 H 0.96995 * 120.00073 * 0.02562 * 14 13 10 42 42 H 0.97004 * 120.00554 * 359.97438 * 17 15 14 43 43 H 1.08996 * 109.46903 * 299.99733 * 18 17 15 44 44 H 1.09003 * 109.47269 * 59.99794 * 18 17 15 45 45 H 0.96998 * 120.00305 * 180.02562 * 22 21 19 46 46 H 1.07998 * 120.02325 * 179.73677 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1064 -2.0273 1.1000 6 6 2.6654 -2.7355 2.1542 7 6 2.7665 -4.1113 2.0836 8 6 2.3117 -4.7827 0.9635 9 6 1.7540 -4.0794 -0.0879 10 6 1.2589 -4.8142 -1.3069 11 1 1.2746 -4.1441 -2.1665 12 8 2.1052 -5.9369 -1.5627 13 6 -0.1718 -5.2989 -1.0641 14 7 -0.6533 -6.0127 -2.2493 15 6 -1.8968 -6.5326 -2.2639 16 8 -2.6170 -6.4134 -1.2916 17 7 -2.3396 -7.1897 -3.3541 18 6 -3.6913 -7.7544 -3.3703 19 6 -3.9372 -8.4312 -4.6941 20 1 -3.1638 -8.4403 -5.4478 21 6 -5.1495 -9.0389 -4.9430 22 7 -6.0912 -9.0284 -4.0250 23 14 -5.4540 -9.8785 -6.5836 24 1 -5.0401 -11.3019 -6.4957 25 1 -6.8990 -9.8030 -6.9176 26 1 -4.6652 -9.1981 -7.6418 27 6 1.6551 -2.7026 -0.0243 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.0218 -2.2115 3.0286 36 1 3.2018 -4.6630 2.9037 37 1 2.3920 -5.8583 0.9101 38 1 2.1396 -6.5765 -0.8382 39 1 -0.8173 -4.4425 -0.8690 40 1 -0.1875 -5.9689 -0.2045 41 1 -0.0771 -6.1118 -3.0232 42 1 -1.7636 -7.2882 -4.1284 43 1 -3.7904 -8.4828 -2.5655 44 1 -4.4202 -6.9562 -3.2298 45 1 -6.9439 -9.4562 -4.1999 46 1 1.2232 -2.1533 -0.8477 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787357776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:55 Heat of formation + Delta-G solvation = -104.679452 kcal Electronic energy + Delta-G solvation = -26433.508113 eV Core-core repulsion = 22516.167188 eV Total energy + Delta-G solvation = -3917.340924 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78392 -39.42623 -38.59474 -36.92247 -34.31995 -33.78072 -33.60930 -32.31249 -31.83471 -30.06194 -28.46816 -27.67341 -26.73608 -23.97186 -23.63515 -22.32616 -21.52707 -21.11526 -20.15283 -18.66302 -18.07416 -17.11376 -16.53700 -16.33230 -15.97406 -15.72435 -15.51447 -15.36046 -14.79735 -14.57174 -14.51844 -14.11425 -13.98519 -13.69610 -13.50410 -13.13723 -12.99274 -12.77376 -12.64935 -12.53790 -12.39498 -12.01456 -11.94276 -11.78221 -11.65542 -11.42470 -11.25730 -10.95534 -10.93012 -10.86938 -10.41902 -10.28447 -9.42563 -9.35146 -9.17310 -8.78532 -8.66752 -8.47537 -7.73813 -6.13650 -4.20073 0.95544 1.13111 2.82686 3.23189 3.26097 3.32397 3.35114 3.49356 3.95531 4.13715 4.26591 4.34520 4.37884 4.47436 4.51798 4.62905 4.69645 4.76381 4.90906 4.98587 5.08416 5.13495 5.18949 5.22376 5.23933 5.31802 5.34952 5.46037 5.59176 5.65814 5.70025 5.78955 5.79353 5.97645 6.11431 6.23702 6.44906 6.82604 7.11571 7.14097 7.30155 7.53816 7.57501 7.59100 7.93122 8.06676 8.78717 8.96710 9.35209 9.50083 10.96626 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018844 B = 0.002145 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.504859 B =13048.437253 C =13807.264523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.076 3.924 3 C -0.148 4.148 4 O -0.311 6.311 5 C 0.135 3.865 6 C -0.153 4.153 7 C -0.076 4.076 8 C -0.147 4.147 9 C -0.072 4.072 10 C 0.137 3.863 11 H 0.113 0.887 12 O -0.549 6.549 13 C 0.117 3.883 14 N -0.753 5.753 15 C 0.692 3.308 16 O -0.603 6.603 17 N -0.729 5.729 18 C 0.267 3.733 19 C -0.541 4.541 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.886 5.886 23 Si 0.904 3.096 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.198 4.198 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.378 0.622 39 H 0.072 0.928 40 H 0.067 0.933 41 H 0.396 0.604 42 H 0.387 0.613 43 H 0.024 0.976 44 H 0.024 0.976 45 H 0.265 0.735 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.243 17.054 9.175 28.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.020 3.980 3 C -0.205 4.205 4 O -0.225 6.225 5 C 0.089 3.911 6 C -0.172 4.172 7 C -0.094 4.094 8 C -0.165 4.165 9 C -0.073 4.073 10 C 0.078 3.922 11 H 0.131 0.869 12 O -0.356 6.356 13 C -0.008 4.008 14 N -0.411 5.411 15 C 0.392 3.608 16 O -0.482 6.482 17 N -0.381 5.381 18 C 0.146 3.854 19 C -0.580 4.580 20 H 0.081 0.919 21 C -0.141 4.141 22 N -0.523 5.523 23 Si 0.732 3.268 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 C -0.216 4.216 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.142 0.858 38 H 0.226 0.774 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.230 0.770 42 H 0.219 0.781 43 H 0.042 0.958 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 20.444 17.532 9.699 28.625 hybrid contribution 0.002 -0.840 -1.162 1.434 sum 20.445 16.692 8.537 27.740 Atomic orbital electron populations 1.22409 0.94712 1.03533 1.03379 1.22476 0.94589 0.93690 0.87262 1.21856 1.02033 0.93451 1.03204 1.86121 1.81086 1.16245 1.39071 1.18942 0.95184 0.82661 0.94291 1.20469 1.04120 0.93891 0.98690 1.20924 0.97638 0.93207 0.97639 1.20792 1.01866 1.00025 0.93859 1.20163 0.97584 0.93493 0.96071 1.21063 0.88256 0.87548 0.95349 0.86905 1.86619 1.68306 1.34462 1.46169 1.21667 0.93189 0.97196 0.88779 1.45003 1.15451 1.61980 1.18710 1.16146 0.81155 0.79134 0.84354 1.90873 1.56680 1.65419 1.35218 1.45709 1.19300 1.57850 1.15230 1.18976 0.75960 0.93322 0.97164 1.21233 1.00131 1.36501 1.00109 0.91928 1.24951 0.95701 0.96028 0.97412 1.69977 1.05309 1.43328 1.33704 0.86405 0.77498 0.79737 0.83190 1.20483 1.21036 1.19785 1.21092 1.06748 0.94544 0.99246 0.90778 0.91547 0.91312 0.90804 0.91680 0.90375 0.91417 0.85238 0.85127 0.85815 0.77360 0.91022 0.91443 0.77045 0.78105 0.95763 0.95788 0.92479 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 9.17 37.16 0.34 -0.98 16 2 C 0.08 0.56 2.85 -26.73 -0.08 0.48 16 3 C -0.15 -0.83 9.56 37.16 0.36 -0.47 16 4 O -0.31 -3.02 9.80 -19.42 -0.19 -3.21 16 5 C 0.13 1.34 6.60 -39.22 -0.26 1.08 16 6 C -0.15 -1.40 9.99 -39.43 -0.39 -1.79 16 7 C -0.08 -0.63 10.04 -39.61 -0.40 -1.03 16 8 C -0.15 -1.29 9.33 -39.56 -0.37 -1.66 16 9 C -0.07 -0.69 5.00 -104.64 -0.52 -1.22 16 10 C 0.14 1.34 3.30 -27.89 -0.09 1.25 16 11 H 0.11 1.02 8.05 -51.93 -0.42 0.61 16 12 O -0.55 -5.38 12.88 -35.23 -0.45 -5.83 16 13 C 0.12 1.50 5.32 -4.05 -0.02 1.48 16 14 N -0.75 -11.35 5.45 -65.23 -0.36 -11.71 16 15 C 0.69 14.54 8.57 -86.91 -0.74 13.79 16 16 O -0.60 -15.32 16.34 5.29 0.09 -15.24 16 17 N -0.73 -15.90 5.55 -66.42 -0.37 -16.27 16 18 C 0.27 7.25 5.43 -5.19 -0.03 7.23 16 19 C -0.54 -14.90 9.28 -34.44 -0.32 -15.21 16 20 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 21 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 23 Si 0.90 21.03 29.54 -169.99 -5.02 16.00 16 24 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C -0.20 -1.89 7.87 -39.43 -0.31 -2.20 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.56 6.91 -51.93 -0.36 0.20 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.50 6.31 -51.93 -0.33 0.18 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 37 H 0.12 0.85 6.61 -52.49 -0.35 0.50 16 38 H 0.38 2.76 7.39 45.56 0.34 3.09 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.40 5.01 8.36 -40.82 -0.34 4.67 16 42 H 0.39 7.24 8.34 -40.82 -0.34 6.90 16 43 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 46 H 0.13 1.09 5.43 -52.49 -0.29 0.81 16 LS Contribution 384.60 15.07 5.80 5.80 Total: -1.00 -34.96 384.60 -8.97 -43.93 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -6.27 Total: 9.75 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.94 Total: 2.41 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.01 Total: -53.60 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.56 Total: -24.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.96 -8.97 -43.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787357776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.747 kcal (2) G-P(sol) polarization free energy of solvation -34.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds